Wall clock time and date at job start Mon Mar 30 2020 04:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39087 * 120.00031 * 2 1 4 4 C 1.39480 * 120.39707 * 180.02562 * 3 2 1 5 5 C 1.38188 * 118.43741 * 179.97438 * 4 3 2 6 6 C 1.39619 * 119.15496 * 0.02562 * 5 4 3 7 7 C 1.47697 * 119.64459 * 179.97438 * 6 5 4 8 8 O 1.21606 * 119.99867 * 352.15375 * 7 6 5 9 9 N 1.34769 * 120.00477 * 172.15426 * 7 6 5 10 10 C 1.36829 * 120.00393 * 181.88950 * 9 7 6 11 11 H 1.08000 * 120.00416 * 29.07808 * 10 9 7 12 12 C 1.39072 * 120.00247 * 209.07678 * 10 9 7 13 13 N 1.31355 * 119.99716 * 26.37856 * 12 10 9 14 14 Si 1.86794 * 120.00278 * 206.37798 * 12 10 9 15 15 H 1.48500 * 109.46954 * 90.00078 * 14 12 10 16 16 H 1.48502 * 109.47253 * 209.99906 * 14 12 10 17 17 H 1.48506 * 109.47172 * 330.00059 * 14 12 10 18 18 C 1.46510 * 119.99677 * 1.89179 * 9 7 6 19 19 C 1.47191 * 109.47068 * 82.61432 * 18 9 7 20 20 N 6.21448 * 84.59214 * 19.60192 * 2 1 3 21 21 N 1.32890 * 120.71307 * 359.97438 * 6 5 4 22 22 C 1.31337 * 121.70622 * 0.04925 * 21 6 5 23 23 H 1.08997 * 109.47009 * 59.99458 * 1 2 3 24 24 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46547 * 299.99866 * 1 2 3 26 26 H 0.97002 * 120.00159 * 180.02562 * 2 1 3 27 27 H 1.07995 * 120.77960 * 359.95763 * 4 3 2 28 28 H 1.08006 * 120.41906 * 179.72689 * 5 4 3 29 29 H 0.97000 * 120.00136 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.47060 * 202.61379 * 18 9 7 31 31 H 1.08994 * 109.46976 * 322.61154 * 18 9 7 32 32 H 1.07990 * 119.61360 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1605 1.2045 0.0000 4 6 3.5552 1.2142 -0.0005 5 6 4.2049 2.4339 -0.0011 6 6 3.4484 3.6074 -0.0005 7 6 4.1316 4.9169 -0.0005 8 8 5.3379 4.9733 0.1428 9 7 3.4182 6.0492 -0.1592 10 6 4.0553 7.2595 -0.1980 11 1 5.0683 7.3250 -0.5665 12 6 3.3983 8.4054 0.2372 13 7 2.4373 8.3132 1.1280 14 14 3.8825 10.0756 -0.4449 15 1 3.0720 10.3704 -1.6537 16 1 3.6373 11.1198 0.5822 17 1 5.3231 10.0644 -0.8053 18 6 1.9604 5.9842 -0.2903 19 6 1.3511 5.8958 1.0466 20 7 0.8794 5.8283 2.0756 21 7 2.1204 3.5589 0.0000 22 6 1.4714 2.4171 0.0010 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.9501 -0.8400 -0.0004 27 1 4.1143 0.2902 -0.0003 28 1 5.2840 2.4787 0.0030 29 1 1.9788 9.1124 1.4313 30 1 1.6007 6.8808 -0.7950 31 1 1.6870 5.1047 -0.8732 32 1 0.3915 2.4171 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228581744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:54 Heat of formation + Delta-G solvation = 62.360843 kcal Electronic energy + Delta-G solvation = -19028.572308 eV Core-core repulsion = 15990.685551 eV Total energy + Delta-G solvation = -3037.886756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16824 -38.22888 -35.83660 -35.55490 -34.07606 -32.22720 -31.57449 -29.80772 -27.20255 -26.46177 -24.95831 -23.39947 -22.13942 -19.90782 -17.68823 -17.52699 -17.04068 -16.12786 -15.87414 -15.28016 -14.61092 -14.53003 -14.21229 -14.03110 -13.68282 -13.22096 -13.16593 -12.68744 -12.49485 -12.24099 -11.87840 -11.80957 -11.37288 -11.10101 -11.06618 -10.67741 -10.41364 -10.35986 -10.12704 -9.29339 -9.18749 -8.99769 -8.42032 -7.84816 -7.44825 -6.45534 -3.95037 1.36195 1.59922 3.15620 3.26254 3.30762 3.32616 3.63145 3.96398 4.20991 4.37297 4.56487 4.71387 4.90949 4.95558 5.00407 5.03983 5.27895 5.28523 5.49422 5.54434 5.66246 5.77490 6.00980 6.14390 6.42460 6.54009 6.58992 6.83903 7.18234 7.50600 7.51185 8.05505 8.26275 8.43117 9.07059 9.13247 9.25995 9.88321 10.58417 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.006077 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.525529 B = 4606.315711 C = 5209.293582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.746 5.746 3 C 0.162 3.838 4 C -0.163 4.163 5 C -0.073 4.073 6 C 0.048 3.952 7 C 0.499 3.501 8 O -0.577 6.577 9 N -0.413 5.413 10 C -0.322 4.322 11 H 0.106 0.894 12 C 0.040 3.960 13 N -0.847 5.847 14 Si 0.922 3.078 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.267 1.267 18 C 0.216 3.784 19 C 0.268 3.732 20 N -0.485 5.485 21 N -0.422 5.422 22 C 0.026 3.974 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.399 0.601 27 H 0.131 0.869 28 H 0.143 0.857 29 H 0.274 0.726 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 -13.892 -6.225 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.376 5.376 3 C 0.056 3.944 4 C -0.193 4.193 5 C -0.094 4.094 6 C -0.092 4.092 7 C 0.288 3.712 8 O -0.460 6.460 9 N -0.130 5.130 10 C -0.449 4.449 11 H 0.124 0.876 12 C -0.168 4.168 13 N -0.482 5.482 14 Si 0.748 3.252 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.191 1.191 18 C 0.089 3.911 19 C -0.050 4.050 20 N -0.165 5.165 21 N -0.134 5.134 22 C -0.138 4.138 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.233 0.767 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.138 0.862 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.870 -12.964 -4.527 14.934 hybrid contribution 0.803 -0.228 -0.425 0.937 sum -5.066 -13.192 -4.952 14.974 Atomic orbital electron populations 1.21574 0.79995 1.02343 1.01531 1.44184 1.05762 1.05043 1.82583 1.18988 0.92049 0.87763 0.95600 1.20929 0.91936 0.98613 1.07805 1.21810 1.01749 0.90945 0.94945 1.21405 0.88936 0.95312 1.03528 1.17605 0.87001 0.82735 0.83864 1.90626 1.13694 1.86183 1.55503 1.43407 1.04120 1.05614 1.59897 1.19645 1.01459 0.81810 1.41998 0.87610 1.25447 0.96863 1.00348 0.94133 1.69973 1.23918 1.31039 1.23282 0.85999 0.79543 0.80974 0.78695 1.20001 1.21094 1.19102 1.19116 0.81173 1.03516 0.87327 1.28780 0.92277 0.89119 0.94862 1.80708 1.10938 1.13394 1.11504 1.67997 1.09336 1.27348 1.08705 1.22401 0.99920 0.86231 1.05291 0.92651 0.90916 0.92687 0.76677 0.85157 0.83905 0.91586 0.88557 0.86171 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 9.94 59.85 0.60 1.25 16 2 N -0.75 -6.98 5.87 -65.25 -0.38 -7.37 16 3 C 0.16 2.13 6.68 -83.65 -0.56 1.57 16 4 C -0.16 -2.22 10.03 -39.14 -0.39 -2.61 16 5 C -0.07 -1.26 9.62 -39.08 -0.38 -1.63 16 6 C 0.05 0.99 6.59 -83.03 -0.55 0.44 16 7 C 0.50 12.49 7.51 -12.40 -0.09 12.40 16 8 O -0.58 -15.97 16.11 5.27 0.08 -15.88 16 9 N -0.41 -10.45 2.56 -119.07 -0.30 -10.76 16 10 C -0.32 -8.62 9.00 -15.01 -0.14 -8.76 16 11 H 0.11 2.93 7.65 -52.49 -0.40 2.53 16 12 C 0.04 1.02 4.66 -17.45 -0.08 0.94 16 13 N -0.85 -22.78 10.41 55.50 0.58 -22.20 16 14 Si 0.92 19.84 29.63 -169.99 -5.04 14.80 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 18 C 0.22 4.77 4.78 -6.83 -0.03 4.74 16 19 C 0.27 6.49 11.75 -20.83 -0.24 6.25 16 20 N -0.49 -12.51 18.52 42.07 0.78 -11.73 16 21 N -0.42 -7.96 4.86 -9.64 -0.05 -8.01 16 22 C 0.03 0.40 10.48 -17.31 -0.18 0.22 16 23 H 0.05 0.39 7.95 -51.93 -0.41 -0.02 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.44 7.95 -51.93 -0.41 0.03 16 26 H 0.40 2.86 8.85 -40.82 -0.36 2.50 16 27 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.14 2.42 7.65 -52.48 -0.40 2.02 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.10 2.07 7.27 -51.93 -0.38 1.69 16 31 H 0.12 2.33 5.39 -51.93 -0.28 2.05 16 32 H 0.15 1.94 6.74 -52.49 -0.35 1.59 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -33.47 284.30 -5.07 -38.54 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -2.98 Total: 3.52 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: -2.05 Total: 14.81 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.62 Total: -60.07 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.88 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.04 Total: 14.80 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.47 -5.07 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228581744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.900 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds