Wall clock time and date at job start Mon Mar 30 2020 04:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39087 * 120.00031 * 2 1 4 4 C 1.39480 * 120.39707 * 180.02562 * 3 2 1 5 5 C 1.38188 * 118.43741 * 179.97438 * 4 3 2 6 6 C 1.39619 * 119.15496 * 0.02562 * 5 4 3 7 7 C 1.47697 * 119.64459 * 179.97438 * 6 5 4 8 8 O 1.21606 * 119.99867 * 352.15375 * 7 6 5 9 9 N 1.34769 * 120.00477 * 172.15426 * 7 6 5 10 10 C 1.36829 * 120.00393 * 181.88950 * 9 7 6 11 11 H 1.08000 * 120.00416 * 29.07808 * 10 9 7 12 12 C 1.39072 * 120.00247 * 209.07678 * 10 9 7 13 13 N 1.31355 * 119.99716 * 26.37856 * 12 10 9 14 14 Si 1.86794 * 120.00278 * 206.37798 * 12 10 9 15 15 H 1.48500 * 109.46954 * 90.00078 * 14 12 10 16 16 H 1.48502 * 109.47253 * 209.99906 * 14 12 10 17 17 H 1.48506 * 109.47172 * 330.00059 * 14 12 10 18 18 C 1.46510 * 119.99677 * 1.89179 * 9 7 6 19 19 C 1.47191 * 109.47068 * 82.61432 * 18 9 7 20 20 N 6.21448 * 84.59214 * 19.60192 * 2 1 3 21 21 N 1.32890 * 120.71307 * 359.97438 * 6 5 4 22 22 C 1.31337 * 121.70622 * 0.04925 * 21 6 5 23 23 H 1.08997 * 109.47009 * 59.99458 * 1 2 3 24 24 H 1.09001 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46547 * 299.99866 * 1 2 3 26 26 H 0.97002 * 120.00159 * 180.02562 * 2 1 3 27 27 H 1.07995 * 120.77960 * 359.95763 * 4 3 2 28 28 H 1.08006 * 120.41906 * 179.72689 * 5 4 3 29 29 H 0.97000 * 120.00136 * 180.02562 * 13 12 10 30 30 H 1.09001 * 109.47060 * 202.61379 * 18 9 7 31 31 H 1.08994 * 109.46976 * 322.61154 * 18 9 7 32 32 H 1.07990 * 119.61360 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1605 1.2045 0.0000 4 6 3.5552 1.2142 -0.0005 5 6 4.2049 2.4339 -0.0011 6 6 3.4484 3.6074 -0.0005 7 6 4.1316 4.9169 -0.0005 8 8 5.3379 4.9733 0.1428 9 7 3.4182 6.0492 -0.1592 10 6 4.0553 7.2595 -0.1980 11 1 5.0683 7.3250 -0.5665 12 6 3.3983 8.4054 0.2372 13 7 2.4373 8.3132 1.1280 14 14 3.8825 10.0756 -0.4449 15 1 3.0720 10.3704 -1.6537 16 1 3.6373 11.1198 0.5822 17 1 5.3231 10.0644 -0.8053 18 6 1.9604 5.9842 -0.2903 19 6 1.3511 5.8958 1.0466 20 7 0.8794 5.8283 2.0756 21 7 2.1204 3.5589 0.0000 22 6 1.4714 2.4171 0.0010 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.9501 -0.8400 -0.0004 27 1 4.1143 0.2902 -0.0003 28 1 5.2840 2.4787 0.0030 29 1 1.9788 9.1124 1.4313 30 1 1.6007 6.8808 -0.7950 31 1 1.6870 5.1047 -0.8732 32 1 0.3915 2.4171 0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228581744.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:54 Heat of formation + Delta-G solvation = 38.755619 kcal Electronic energy + Delta-G solvation = -19029.595907 eV Core-core repulsion = 15990.685551 eV Total energy + Delta-G solvation = -3038.910356 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55747 -39.89307 -37.50055 -36.90231 -36.03749 -33.90222 -33.07047 -31.04134 -29.02822 -27.61612 -26.52669 -24.75465 -23.36990 -21.53897 -19.61933 -18.73905 -18.53493 -17.87922 -17.15432 -16.86265 -16.14254 -15.76659 -15.66758 -15.31321 -15.12822 -14.81101 -14.74684 -14.09365 -13.94575 -13.74455 -13.29429 -13.21122 -12.99742 -12.87217 -12.81530 -12.36720 -12.14421 -12.04362 -11.50848 -11.08424 -10.78193 -10.52343 -10.05998 -9.79530 -8.50458 -8.39878 -6.00156 0.02226 0.40218 1.44796 1.49034 1.61730 1.95590 2.19153 2.37843 2.45390 2.51109 2.89853 3.11378 3.18114 3.60208 3.84616 3.90122 3.97185 4.18875 4.31530 4.52675 4.72098 4.74664 4.76591 4.95385 4.99766 5.04909 5.21309 5.47774 5.57498 6.09226 6.18312 6.40999 6.73217 6.98633 7.13982 7.21495 7.34335 7.96640 8.62273 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.032493 B = 0.006077 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.525529 B = 4606.315711 C = 5209.293582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.726 5.726 3 C 0.189 3.811 4 C -0.158 4.158 5 C -0.072 4.072 6 C 0.001 3.999 7 C 0.493 3.507 8 O -0.619 6.619 9 N -0.431 5.431 10 C -0.353 4.353 11 H 0.084 0.916 12 C 0.008 3.992 13 N -0.878 5.878 14 Si 0.991 3.009 15 H -0.255 1.255 16 H -0.286 1.286 17 H -0.270 1.270 18 C 0.223 3.777 19 C 0.280 3.720 20 N -0.517 5.517 21 N -0.438 5.438 22 C 0.015 3.985 23 H 0.062 0.938 24 H 0.105 0.895 25 H 0.051 0.949 26 H 0.415 0.585 27 H 0.171 0.829 28 H 0.137 0.863 29 H 0.274 0.726 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 -16.366 -7.077 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.354 5.354 3 C 0.079 3.921 4 C -0.188 4.188 5 C -0.094 4.094 6 C -0.137 4.137 7 C 0.284 3.716 8 O -0.506 6.506 9 N -0.148 5.148 10 C -0.481 4.481 11 H 0.101 0.899 12 C -0.197 4.197 13 N -0.514 5.514 14 Si 0.814 3.186 15 H -0.179 1.179 16 H -0.212 1.212 17 H -0.195 1.195 18 C 0.097 3.903 19 C -0.037 4.037 20 N -0.198 5.198 21 N -0.149 5.149 22 C -0.151 4.151 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.070 0.930 26 H 0.252 0.748 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.167 0.833 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.414 -15.491 -5.392 18.001 hybrid contribution 1.173 0.190 -0.136 1.196 sum -6.242 -15.302 -5.528 17.426 Atomic orbital electron populations 1.21849 0.78224 1.04666 1.01652 1.44381 1.06971 1.04326 1.79684 1.19043 0.92107 0.88581 0.92344 1.21219 0.92309 0.98557 1.06673 1.21823 1.01492 0.91426 0.94659 1.20760 0.89957 0.93798 1.09188 1.18400 0.86810 0.84439 0.81985 1.90558 1.15636 1.87373 1.57000 1.43575 1.05225 1.05387 1.60597 1.19625 1.01393 0.83387 1.43677 0.89851 1.26219 0.96540 1.03323 0.93569 1.70056 1.25157 1.31893 1.24288 0.84978 0.79088 0.76133 0.78380 1.17946 1.21153 1.19486 1.19308 0.79489 1.04920 0.86609 1.29176 0.91470 0.88023 0.95049 1.80682 1.12100 1.14732 1.12288 1.67702 1.08646 1.29554 1.09040 1.22801 1.00948 0.86098 1.05248 0.91982 0.87677 0.93046 0.74785 0.81125 0.84547 0.91570 0.88314 0.83326 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.94 127.77 1.27 2.04 16 2 N -0.73 -9.88 5.87 -360.34 -2.12 -12.00 16 3 C 0.19 4.27 6.68 38.59 0.26 4.52 16 4 C -0.16 -3.79 10.03 22.56 0.23 -3.56 16 5 C -0.07 -2.45 9.62 22.59 0.22 -2.23 16 6 C 0.00 0.04 6.59 41.82 0.28 0.31 16 7 C 0.49 25.82 7.51 86.74 0.65 26.47 16 8 O -0.62 -36.29 16.11 -4.05 -0.07 -36.35 16 9 N -0.43 -22.68 2.56 -648.88 -1.66 -24.34 16 10 C -0.35 -19.80 9.00 84.11 0.76 -19.05 16 11 H 0.08 4.92 7.65 -2.91 -0.02 4.90 16 12 C 0.01 0.43 4.66 84.96 0.40 0.83 16 13 N -0.88 -48.24 10.41 21.68 0.23 -48.01 16 14 Si 0.99 41.47 29.63 68.60 2.03 43.50 16 15 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 16 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 C 0.22 10.06 4.78 84.57 0.40 10.46 16 19 C 0.28 13.79 11.75 89.46 1.05 14.84 16 20 N -0.52 -26.98 18.52 19.98 0.37 -26.61 16 21 N -0.44 -16.23 4.86 -184.41 -0.90 -17.12 16 22 C 0.02 0.43 10.48 85.06 0.89 1.32 16 23 H 0.06 0.59 7.95 -2.39 -0.02 0.57 16 24 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.05 0.60 7.95 -2.39 -0.02 0.58 16 26 H 0.42 3.55 8.85 -92.71 -0.82 2.73 16 27 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.14 4.70 7.65 -2.91 -0.02 4.68 16 29 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.10 4.34 7.27 -2.39 -0.02 4.32 16 31 H 0.15 5.78 5.39 -2.39 -0.01 5.76 16 32 H 0.17 3.91 6.74 -2.92 -0.02 3.90 16 Total: -1.00 -76.48 284.30 4.64 -71.84 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.36 Total: 13.14 kcal Atomic # 6 Polarization: 29.57 SS G_CDS: 6.40 Total: 35.96 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -4.08 Total: -128.09 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.07 Total: -36.35 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -76.48 4.64 -71.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228581744.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.592 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds