Wall clock time and date at job start Mon Mar 30 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47173 * 300.00139 * 3 2 1 6 6 H 1.48503 * 109.47049 * 59.99973 * 3 2 1 7 7 C 1.37879 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00214 * 182.53144 * 7 2 1 9 9 C 1.50697 * 120.00048 * 2.52365 * 7 2 1 10 10 H 1.09005 * 109.47051 * 174.79909 * 9 7 2 11 11 N 1.46898 * 109.47206 * 54.79983 * 9 7 2 12 12 C 1.46903 * 110.99830 * 84.99519 * 11 9 7 13 13 H 1.08995 * 110.88963 * 328.81430 * 12 11 9 14 14 C 1.54478 * 110.96876 * 204.99695 * 12 11 9 15 15 N 1.46759 * 105.47669 * 216.46973 * 14 12 11 16 16 C 1.34422 * 111.30105 * 17.01615 * 15 14 12 17 17 O 1.21274 * 124.94156 * 179.57019 * 16 15 14 18 18 C 1.51286 * 110.11394 * 359.59724 * 16 15 14 19 19 C 1.50696 * 109.47394 * 294.79533 * 9 7 2 20 20 C 1.38235 * 120.00659 * 270.22738 * 19 9 7 21 21 C 1.38234 * 120.00347 * 179.76241 * 20 19 9 22 22 C 1.38241 * 119.99509 * 0.51054 * 21 20 19 23 23 C 1.38230 * 120.00261 * 359.74134 * 22 21 20 24 24 C 1.38235 * 120.00140 * 0.02562 * 23 22 21 25 25 H 0.97002 * 119.99937 * 0.02562 * 1 2 3 26 26 H 1.00901 * 110.99932 * 321.05234 * 11 9 7 27 27 H 1.09006 * 110.24182 * 97.46820 * 14 12 11 28 28 H 1.08994 * 110.24764 * 335.47505 * 14 12 11 29 29 H 0.96996 * 124.35035 * 197.04241 * 15 14 12 30 30 H 1.08999 * 110.48325 * 102.42187 * 18 16 15 31 31 H 1.08993 * 110.48178 * 224.93162 * 18 16 15 32 32 H 1.08001 * 119.99398 * 0.02562 * 20 19 9 33 33 H 1.07993 * 120.00360 * 180.23135 * 21 20 19 34 34 H 1.08001 * 119.99271 * 179.72364 * 22 21 20 35 35 H 1.08007 * 120.00155 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.00368 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0837 -1.1946 0.0408 9 6 1.2521 -2.4985 -0.0586 10 1 1.9602 -3.3229 -0.1433 11 7 0.3597 -2.4976 -1.2254 12 6 1.0740 -2.9282 -2.4348 13 1 2.1242 -2.6401 -2.3891 14 6 0.4005 -2.3635 -3.7052 15 7 0.5241 -3.4199 -4.7164 16 6 0.8141 -4.6048 -4.1518 17 8 0.9629 -5.6449 -4.7574 18 6 0.9271 -4.4522 -2.6509 19 6 0.4363 -2.6643 1.1976 20 6 0.9852 -3.2910 2.3007 21 6 0.2385 -3.4387 3.4546 22 6 -1.0608 -2.9689 3.5018 23 6 -1.6115 -2.3468 2.3971 24 6 -0.8631 -2.1948 1.2448 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0612 -1.5902 -1.3580 27 1 0.9160 -1.4620 -4.0364 28 1 -0.6502 -2.1483 -3.5111 29 1 0.4115 -3.2809 -5.6697 30 1 0.0263 -4.8220 -2.1610 31 1 1.8060 -4.9788 -2.2791 32 1 1.9989 -3.6616 2.2623 33 1 0.6686 -3.9250 4.3176 34 1 -1.6456 -3.0883 4.4019 35 1 -2.6267 -1.9801 2.4339 36 1 -1.2935 -1.7092 0.3815 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229152451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:11 Heat of formation + Delta-G solvation = -5.984821 kcal Electronic energy + Delta-G solvation = -19497.255143 eV Core-core repulsion = 16559.945040 eV Total energy + Delta-G solvation = -2937.310103 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84655 -38.24751 -36.46600 -34.80674 -32.13863 -30.62480 -29.74960 -28.62330 -27.06787 -25.70900 -22.77888 -21.50839 -20.35038 -20.24393 -19.79149 -17.05174 -16.59527 -15.97026 -15.87990 -15.02197 -14.60569 -14.17046 -13.91486 -13.70433 -13.30242 -13.01120 -12.79150 -12.67474 -12.30479 -11.88979 -11.73048 -11.48568 -11.24837 -11.08966 -10.80368 -10.67522 -10.34586 -10.07086 -9.82715 -9.58143 -9.53577 -8.84472 -8.81889 -7.83330 -7.48841 -7.27898 -6.18345 -4.45106 2.49730 2.61330 2.92149 3.10935 3.21928 3.24922 3.66573 4.18940 4.78340 4.90633 5.02504 5.04899 5.22137 5.56784 5.81579 5.85379 5.91293 5.97244 6.00452 6.14479 6.30293 6.42155 6.54815 6.66746 6.76521 6.85127 7.05853 7.12471 7.23597 7.27076 7.51118 7.55517 7.72720 7.85033 7.96463 8.21519 8.25848 8.53251 8.68932 8.85717 9.27988 10.67234 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.007957 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.122490 B = 3518.127923 C = 4757.798625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.072 3.928 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.238 3.762 10 H 0.039 0.961 11 N -0.674 5.674 12 C 0.085 3.915 13 H 0.066 0.934 14 C 0.099 3.901 15 N -0.732 5.732 16 C 0.522 3.478 17 O -0.553 6.553 18 C -0.149 4.149 19 C -0.020 4.020 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.052 4.052 25 H 0.267 0.733 26 H 0.369 0.631 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.403 0.597 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -1.512 -1.855 2.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.078 0.922 9 C 0.130 3.870 10 H 0.057 0.943 11 N -0.313 5.313 12 C -0.027 4.027 13 H 0.084 0.916 14 C -0.026 4.026 15 N -0.387 5.387 16 C 0.309 3.691 17 O -0.432 6.432 18 C -0.190 4.190 19 C -0.021 4.021 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.170 4.170 23 C -0.166 4.166 24 C -0.071 4.071 25 H 0.078 0.922 26 H 0.197 0.803 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.240 0.760 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.766 -2.519 -1.909 3.621 hybrid contribution 0.967 2.111 -0.261 2.336 sum -0.799 -0.409 -2.169 2.348 Atomic orbital electron populations 1.69589 1.05586 1.26961 1.49466 1.24996 0.94974 0.99261 0.93844 0.86515 0.80242 0.83386 0.77810 1.19809 1.20832 1.20808 1.21755 0.93676 0.90973 1.51506 0.92227 1.18146 0.88818 0.94801 0.85282 0.94294 1.61021 1.32143 1.37152 1.00951 1.22177 0.97832 0.92323 0.90341 0.91601 1.22331 1.01811 0.90108 0.88348 1.46258 1.72348 1.10344 1.09719 1.21178 0.74090 0.82700 0.91133 1.90690 1.52158 1.30222 1.70122 1.22522 1.05187 0.99271 0.92000 1.20115 0.93697 0.92408 0.95868 1.20836 0.98977 1.01665 0.93807 1.20750 0.95021 1.02849 0.97532 1.20771 0.95822 1.02401 0.98039 1.21089 0.99350 1.01469 0.94680 1.21307 0.93599 0.94362 0.97792 0.92199 0.80341 0.90706 0.90470 0.75984 0.87060 0.89028 0.87865 0.88149 0.88362 0.88147 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -20.42 7.97 55.43 0.44 -19.98 16 2 C 0.07 1.70 5.05 -17.82 -0.09 1.61 16 3 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -12.80 8.59 -34.44 -0.30 -13.10 16 8 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.24 5.16 2.38 -70.02 -0.17 4.99 16 10 H 0.04 0.83 7.80 -51.93 -0.41 0.43 16 11 N -0.67 -13.16 5.22 -100.47 -0.52 -13.68 16 12 C 0.09 1.44 3.23 -66.08 -0.21 1.22 16 13 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 14 C 0.10 1.41 7.25 -3.13 -0.02 1.39 16 15 N -0.73 -10.14 6.24 -59.20 -0.37 -10.51 16 16 C 0.52 8.72 8.43 -10.86 -0.09 8.63 16 17 O -0.55 -11.04 18.03 5.56 0.10 -10.94 16 18 C -0.15 -2.39 6.59 -26.74 -0.18 -2.57 16 19 C -0.02 -0.43 4.79 -104.62 -0.50 -0.93 16 20 C -0.13 -2.75 9.70 -39.58 -0.38 -3.14 16 21 C -0.14 -2.70 10.05 -39.58 -0.40 -3.09 16 22 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 23 C -0.15 -2.92 10.05 -39.59 -0.40 -3.31 16 24 C -0.05 -1.12 7.66 -39.58 -0.30 -1.43 16 25 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 26 H 0.37 7.70 5.18 -39.29 -0.20 7.49 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 1.10 8.01 -51.93 -0.42 0.68 16 29 H 0.40 4.67 8.96 -40.82 -0.37 4.31 16 30 H 0.11 1.82 8.08 -51.93 -0.42 1.40 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 36 H 0.14 3.22 5.59 -52.49 -0.29 2.92 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -25.97 298.12 -8.90 -34.87 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -4.59 Total: 14.65 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.44 Total: -12.97 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -0.45 Total: -44.17 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.10 Total: -10.94 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.97 -8.90 -34.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229152451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.885 kcal (2) G-P(sol) polarization free energy of solvation -25.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds