Wall clock time and date at job start Mon Mar 30 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47173 * 300.00139 * 3 2 1 6 6 H 1.48503 * 109.47049 * 59.99973 * 3 2 1 7 7 C 1.37879 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00214 * 182.53144 * 7 2 1 9 9 C 1.50697 * 120.00048 * 2.52365 * 7 2 1 10 10 H 1.09005 * 109.47051 * 174.79909 * 9 7 2 11 11 N 1.46898 * 109.47206 * 54.79983 * 9 7 2 12 12 C 1.46903 * 110.99830 * 84.99519 * 11 9 7 13 13 H 1.08995 * 110.88963 * 328.81430 * 12 11 9 14 14 C 1.54478 * 110.96876 * 204.99695 * 12 11 9 15 15 N 1.46759 * 105.47669 * 216.46973 * 14 12 11 16 16 C 1.34422 * 111.30105 * 17.01615 * 15 14 12 17 17 O 1.21274 * 124.94156 * 179.57019 * 16 15 14 18 18 C 1.51286 * 110.11394 * 359.59724 * 16 15 14 19 19 C 1.50696 * 109.47394 * 294.79533 * 9 7 2 20 20 C 1.38235 * 120.00659 * 270.22738 * 19 9 7 21 21 C 1.38234 * 120.00347 * 179.76241 * 20 19 9 22 22 C 1.38241 * 119.99509 * 0.51054 * 21 20 19 23 23 C 1.38230 * 120.00261 * 359.74134 * 22 21 20 24 24 C 1.38235 * 120.00140 * 0.02562 * 23 22 21 25 25 H 0.97002 * 119.99937 * 0.02562 * 1 2 3 26 26 H 1.00901 * 110.99932 * 321.05234 * 11 9 7 27 27 H 1.09006 * 110.24182 * 97.46820 * 14 12 11 28 28 H 1.08994 * 110.24764 * 335.47505 * 14 12 11 29 29 H 0.96996 * 124.35035 * 197.04241 * 15 14 12 30 30 H 1.08999 * 110.48325 * 102.42187 * 18 16 15 31 31 H 1.08993 * 110.48178 * 224.93162 * 18 16 15 32 32 H 1.08001 * 119.99398 * 0.02562 * 20 19 9 33 33 H 1.07993 * 120.00360 * 180.23135 * 21 20 19 34 34 H 1.08001 * 119.99271 * 179.72364 * 22 21 20 35 35 H 1.08007 * 120.00155 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.00368 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0837 -1.1946 0.0408 9 6 1.2521 -2.4985 -0.0586 10 1 1.9602 -3.3229 -0.1433 11 7 0.3597 -2.4976 -1.2254 12 6 1.0740 -2.9282 -2.4348 13 1 2.1242 -2.6401 -2.3891 14 6 0.4005 -2.3635 -3.7052 15 7 0.5241 -3.4199 -4.7164 16 6 0.8141 -4.6048 -4.1518 17 8 0.9629 -5.6449 -4.7574 18 6 0.9271 -4.4522 -2.6509 19 6 0.4363 -2.6643 1.1976 20 6 0.9852 -3.2910 2.3007 21 6 0.2385 -3.4387 3.4546 22 6 -1.0608 -2.9689 3.5018 23 6 -1.6115 -2.3468 2.3971 24 6 -0.8631 -2.1948 1.2448 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0612 -1.5902 -1.3580 27 1 0.9160 -1.4620 -4.0364 28 1 -0.6502 -2.1483 -3.5111 29 1 0.4115 -3.2809 -5.6697 30 1 0.0263 -4.8220 -2.1610 31 1 1.8060 -4.9788 -2.2791 32 1 1.9989 -3.6616 2.2623 33 1 0.6686 -3.9250 4.3176 34 1 -1.6456 -3.0883 4.4019 35 1 -2.6267 -1.9801 2.4339 36 1 -1.2935 -1.7092 0.3815 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229152451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:11 Heat of formation + Delta-G solvation = -21.841297 kcal Electronic energy + Delta-G solvation = -19497.942731 eV Core-core repulsion = 16559.945040 eV Total energy + Delta-G solvation = -2937.997692 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19512 -39.79377 -37.91885 -36.33937 -33.76158 -32.14987 -31.28024 -30.05633 -28.55551 -27.25396 -24.39944 -23.02598 -21.72960 -21.66578 -21.29183 -18.47922 -18.22284 -17.40490 -17.35460 -16.69102 -15.97721 -15.67018 -15.45977 -15.25926 -14.75681 -14.44519 -14.28972 -13.99764 -13.79946 -13.48209 -13.28555 -13.09196 -12.83142 -12.69597 -12.43402 -12.19357 -11.85761 -11.70617 -11.41167 -11.18595 -10.97273 -10.57494 -10.09017 -9.38268 -9.07103 -8.88289 -7.93072 -6.27342 0.93746 1.07709 1.39655 1.47427 1.53254 1.56861 2.42548 2.45799 3.10646 3.43156 3.48269 3.68814 3.85839 4.24457 4.41099 4.44093 4.51308 4.66524 4.72471 4.74885 4.88205 4.98847 4.99413 5.17782 5.24460 5.28742 5.57863 5.70323 5.75229 5.84031 5.97680 6.00660 6.10671 6.15001 6.38631 6.55625 6.65122 6.97126 7.19649 7.28295 7.47611 8.87172 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.007957 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.122490 B = 3518.127923 C = 4757.798625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.046 3.954 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.291 1.291 7 C -0.557 4.557 8 H 0.043 0.957 9 C 0.241 3.759 10 H 0.031 0.969 11 N -0.671 5.671 12 C 0.082 3.918 13 H 0.054 0.946 14 C 0.107 3.893 15 N -0.713 5.713 16 C 0.522 3.478 17 O -0.587 6.587 18 C -0.141 4.141 19 C -0.044 4.044 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.069 4.069 25 H 0.268 0.732 26 H 0.363 0.637 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.417 0.583 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 -1.150 -1.399 2.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.156 4.156 3 Si 0.766 3.234 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.217 1.217 7 C -0.596 4.596 8 H 0.061 0.939 9 C 0.132 3.868 10 H 0.049 0.951 11 N -0.308 5.308 12 C -0.030 4.030 13 H 0.072 0.928 14 C -0.017 4.017 15 N -0.368 5.368 16 C 0.310 3.690 17 O -0.469 6.469 18 C -0.182 4.182 19 C -0.045 4.045 20 C -0.171 4.171 21 C -0.161 4.161 22 C -0.169 4.169 23 C -0.174 4.174 24 C -0.088 4.088 25 H 0.078 0.922 26 H 0.189 0.811 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.257 0.743 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.431 -2.139 -1.476 3.558 hybrid contribution 1.159 1.993 -0.343 2.330 sum -1.272 -0.146 -1.818 2.224 Atomic orbital electron populations 1.69686 1.05765 1.27177 1.49062 1.25378 0.95622 1.00764 0.93885 0.85827 0.78918 0.81148 0.77515 1.20624 1.19968 1.21703 1.21842 0.93062 0.92342 1.52370 0.93858 1.18044 0.88894 0.93561 0.86310 0.95071 1.60979 1.31902 1.36523 1.01351 1.22176 0.97201 0.92954 0.90690 0.92844 1.22264 1.02068 0.90305 0.87087 1.46107 1.70880 1.09276 1.10505 1.21161 0.73873 0.82823 0.91173 1.90677 1.54005 1.31527 1.70662 1.22421 1.05180 0.98698 0.91931 1.20258 0.94209 0.93662 0.96374 1.21071 0.99652 1.02029 0.94305 1.21121 0.95087 1.02128 0.97771 1.21161 0.95968 1.01028 0.98741 1.21374 1.00207 1.01375 0.94454 1.21261 0.93866 0.95292 0.98332 0.92206 0.81136 0.89046 0.89837 0.74284 0.87294 0.88871 0.87330 0.85156 0.85092 0.86239 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -40.60 7.97 21.45 0.17 -40.43 16 2 C 0.05 2.16 5.05 84.66 0.43 2.59 16 3 Si 0.94 38.94 29.54 68.60 2.03 40.96 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.56 -26.71 8.59 25.60 0.22 -26.49 16 8 H 0.04 2.16 7.81 -2.91 -0.02 2.13 16 9 C 0.24 10.57 2.38 43.42 0.10 10.68 16 10 H 0.03 1.37 7.80 -2.38 -0.02 1.35 16 11 N -0.67 -26.22 5.22 -471.77 -2.46 -28.69 16 12 C 0.08 2.72 3.23 45.97 0.15 2.87 16 13 H 0.05 1.94 7.71 -2.39 -0.02 1.92 16 14 C 0.11 2.90 7.25 86.83 0.63 3.53 16 15 N -0.71 -18.58 6.24 -459.82 -2.87 -21.45 16 16 C 0.52 17.03 8.43 87.90 0.74 17.77 16 17 O -0.59 -23.17 18.03 -3.01 -0.05 -23.22 16 18 C -0.14 -4.51 6.59 30.59 0.20 -4.31 16 19 C -0.04 -1.93 4.79 -19.87 -0.10 -2.02 16 20 C -0.15 -6.13 9.70 22.27 0.22 -5.91 16 21 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 22 C -0.15 -5.20 10.05 22.27 0.22 -4.98 16 23 C -0.16 -5.90 10.05 22.27 0.22 -5.67 16 24 C -0.07 -2.95 7.66 22.27 0.17 -2.78 16 25 H 0.27 11.98 8.31 -92.71 -0.77 11.20 16 26 H 0.36 15.08 5.18 -89.69 -0.46 14.61 16 27 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 28 H 0.08 2.22 8.01 -2.39 -0.02 2.20 16 29 H 0.42 8.80 8.96 -92.71 -0.83 7.97 16 30 H 0.11 3.55 8.08 -2.39 -0.02 3.53 16 31 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.11 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.13 5.86 5.59 -2.91 -0.02 5.84 16 Total: -1.00 -54.37 298.12 0.05 -54.32 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.19 Total: 38.07 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.43 Total: -19.56 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -5.16 Total: -90.56 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.96 kcal Total: -54.37 0.05 -54.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229152451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.478 kcal (2) G-P(sol) polarization free energy of solvation -54.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds