Wall clock time and date at job start Mon Mar 30 2020 05:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48503 * 109.47037 * 264.54497 * 3 2 1 5 5 H 1.48498 * 109.46907 * 24.54290 * 3 2 1 6 6 H 1.48487 * 109.47228 * 144.54315 * 3 2 1 7 7 C 1.37876 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 4.63827 * 7 2 1 9 9 C 1.50703 * 120.00047 * 184.63076 * 7 2 1 10 10 H 1.08993 * 109.46828 * 4.62490 * 9 7 2 11 11 N 1.46898 * 109.46985 * 244.62374 * 9 7 2 12 12 C 1.46896 * 111.00171 * 85.00581 * 11 9 7 13 13 H 1.09003 * 110.85865 * 31.19864 * 12 11 9 14 14 C 1.54481 * 110.97225 * 154.99760 * 12 11 9 15 15 N 1.46764 * 105.46972 * 143.53447 * 14 12 11 16 16 C 1.34419 * 111.30442 * 342.97864 * 15 14 12 17 17 O 1.21281 * 124.93790 * 180.41214 * 16 15 14 18 18 C 1.51274 * 110.11367 * 0.41313 * 16 15 14 19 19 C 1.50696 * 109.46623 * 124.62541 * 9 7 2 20 20 C 1.38242 * 119.99892 * 254.88543 * 19 9 7 21 21 C 1.38236 * 120.00138 * 179.97438 * 20 19 9 22 22 C 1.38236 * 119.99701 * 359.97438 * 21 20 19 23 23 C 1.38229 * 120.00321 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00436 * 74.80612 * 19 9 7 25 25 H 0.97001 * 119.99809 * 359.97438 * 1 2 3 26 26 H 1.00903 * 110.99871 * 208.95584 * 11 9 7 27 27 H 1.08999 * 110.24077 * 262.52655 * 14 12 11 28 28 H 1.08992 * 110.24701 * 24.44731 * 14 12 11 29 29 H 0.97005 * 124.34613 * 163.00797 * 15 14 12 30 30 H 1.09001 * 110.48505 * 257.57055 * 18 16 15 31 31 H 1.09000 * 110.48354 * 134.93033 * 18 16 15 32 32 H 1.07998 * 119.99830 * 0.26617 * 20 19 9 33 33 H 1.07997 * 119.99936 * 179.97438 * 21 20 19 34 34 H 1.08004 * 119.99586 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.00290 * 179.97438 * 23 22 21 36 36 H 1.07996 * 119.99856 * 0.08022 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6120 1.9798 -1.3938 5 1 1.3938 2.6832 0.5816 6 1 3.4843 1.4762 0.8121 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1279 -0.0747 9 6 3.5079 -1.1961 0.1059 10 1 3.8630 -0.1765 0.2548 11 7 4.0847 -1.7399 -1.1308 12 6 4.2208 -0.6935 -2.1528 13 1 4.4059 0.2770 -1.6923 14 6 5.3352 -1.0481 -3.1622 15 7 4.8531 -0.5674 -4.4624 16 6 3.5288 -0.3384 -4.4379 17 8 2.8748 0.0567 -5.3798 18 6 2.9731 -0.6451 -3.0648 19 6 3.9283 -2.0502 1.2742 20 6 4.3733 -1.4557 2.4402 21 6 4.7584 -2.2391 3.5121 22 6 4.6980 -3.6169 3.4181 23 6 4.2520 -4.2114 2.2526 24 6 3.8673 -3.4280 1.1805 25 1 -0.4850 0.8401 0.0004 26 1 4.9712 -2.1867 -0.9504 27 1 6.2625 -0.5423 -2.8932 28 1 5.4889 -2.1268 -3.1908 29 1 5.4176 -0.4327 -5.2396 30 1 2.4638 -1.6088 -3.0660 31 1 2.2952 0.1453 -2.7424 32 1 4.4157 -0.3792 2.5153 33 1 5.1065 -1.7746 4.4228 34 1 4.9993 -4.2290 4.2554 35 1 4.2051 -5.2879 2.1790 36 1 3.5196 -3.8924 0.2696 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229152472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:17 Heat of formation + Delta-G solvation = -1.560240 kcal Electronic energy + Delta-G solvation = -19447.436788 eV Core-core repulsion = 16510.318549 eV Total energy + Delta-G solvation = -2937.118239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90572 -38.71785 -36.59743 -34.79134 -32.32856 -31.14042 -30.30500 -28.77010 -27.42708 -25.91864 -22.76927 -22.04122 -20.62233 -20.23584 -19.82026 -17.26814 -16.96123 -16.35448 -15.96510 -14.96605 -14.67668 -14.51857 -14.26972 -13.95400 -13.47804 -13.15759 -12.96130 -12.85127 -12.77958 -12.46479 -12.28476 -11.77504 -11.28114 -11.02308 -10.97588 -10.59494 -10.46447 -10.22788 -9.87958 -9.64872 -9.48722 -8.92162 -8.70277 -8.33857 -8.02987 -7.57697 -6.21498 -4.19441 1.97726 2.01267 2.97440 3.12184 3.16193 3.25105 3.59860 4.23474 4.36879 4.67304 4.74777 5.02944 5.14251 5.41663 5.43370 5.45466 5.56621 5.61917 5.74952 5.89930 5.94960 6.15780 6.16766 6.37255 6.44543 6.58463 6.68051 6.71535 7.02665 7.06477 7.06612 7.20900 7.31729 7.39973 7.64373 7.79265 8.11598 8.49374 8.56315 8.91163 9.39419 10.91046 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.007772 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.523418 B = 3602.022733 C = 4506.167524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.858 3.142 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.478 4.478 8 H 0.082 0.918 9 C 0.206 3.794 10 H 0.028 0.972 11 N -0.664 5.664 12 C 0.085 3.915 13 H 0.054 0.946 14 C 0.099 3.901 15 N -0.737 5.737 16 C 0.518 3.482 17 O -0.546 6.546 18 C -0.134 4.134 19 C -0.043 4.043 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.145 4.145 23 C -0.127 4.127 24 C -0.102 4.102 25 H 0.267 0.733 26 H 0.317 0.683 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.403 0.597 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.009 -3.545 0.948 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.126 4.126 3 Si 0.686 3.314 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.099 3.901 10 H 0.045 0.955 11 N -0.297 5.297 12 C -0.026 4.026 13 H 0.072 0.928 14 C -0.026 4.026 15 N -0.393 5.393 16 C 0.306 3.694 17 O -0.423 6.423 18 C -0.175 4.175 19 C -0.044 4.044 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.164 4.164 23 C -0.145 4.145 24 C -0.121 4.121 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.240 0.760 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.791 -3.450 0.328 12.289 hybrid contribution 1.334 1.548 0.216 2.055 sum 13.125 -1.901 0.544 13.273 Atomic orbital electron populations 1.69857 1.06058 1.27110 1.49126 1.25047 0.94658 0.98353 0.94505 0.87251 0.80317 0.84850 0.78990 1.19529 1.21255 1.19165 1.20755 0.87310 0.94750 1.48838 0.89986 1.18972 0.96497 0.91579 0.83009 0.95495 1.61287 1.28143 1.29197 1.11045 1.22261 0.93067 0.94836 0.92442 0.92828 1.22302 0.97358 1.00086 0.82877 1.46228 1.09906 1.68857 1.14278 1.21443 0.82067 0.74920 0.90972 1.90696 1.63171 1.46881 1.41537 1.22427 0.98819 1.06427 0.89788 1.20405 0.93110 0.94434 0.96458 1.21006 1.00538 0.99385 0.93742 1.20957 1.01243 0.93950 0.98100 1.20906 1.02899 0.94719 0.97845 1.21084 1.00312 0.99166 0.93910 1.21025 0.98929 0.93396 0.98713 0.92305 0.86428 0.91025 0.90262 0.75968 0.86027 0.88103 0.87116 0.87190 0.87310 0.87067 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.96 55.43 0.77 -24.71 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.86 19.92 25.28 -169.99 -4.30 15.63 16 4 H -0.27 -6.13 6.83 56.52 0.39 -5.74 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -5.82 6.22 56.52 0.35 -5.47 16 7 C -0.48 -12.06 8.44 -34.44 -0.29 -12.35 16 8 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 9 C 0.21 4.24 2.15 -70.02 -0.15 4.09 16 10 H 0.03 0.59 3.63 -51.93 -0.19 0.40 16 11 N -0.66 -11.52 5.66 -100.47 -0.57 -12.09 16 12 C 0.09 1.41 3.21 -66.08 -0.21 1.20 16 13 H 0.05 0.96 6.36 -51.93 -0.33 0.62 16 14 C 0.10 1.23 7.25 -3.12 -0.02 1.20 16 15 N -0.74 -10.16 6.24 -59.21 -0.37 -10.52 16 16 C 0.52 9.51 8.43 -10.86 -0.09 9.41 16 17 O -0.55 -11.95 18.03 5.56 0.10 -11.85 16 18 C -0.13 -2.56 6.01 -26.74 -0.16 -2.72 16 19 C -0.04 -0.82 4.65 -104.62 -0.49 -1.31 16 20 C -0.13 -2.31 9.67 -39.58 -0.38 -2.69 16 21 C -0.12 -1.95 10.05 -39.58 -0.40 -2.34 16 22 C -0.15 -2.15 10.05 -39.59 -0.40 -2.55 16 23 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 24 C -0.10 -1.79 9.07 -39.58 -0.36 -2.15 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.32 4.70 7.78 -39.29 -0.31 4.39 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 29 H 0.40 4.53 8.96 -40.82 -0.37 4.17 16 30 H 0.12 2.42 8.08 -51.93 -0.42 2.00 16 31 H 0.10 2.21 7.01 -51.93 -0.36 1.85 16 32 H 0.11 1.96 8.00 -52.49 -0.42 1.54 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.13 2.20 7.88 -52.49 -0.41 1.79 16 LS Contribution 298.20 15.07 4.49 4.49 Total: -1.00 -30.09 298.20 -7.85 -37.94 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.54 Total: 11.69 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.45 Total: -10.58 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.16 Total: -47.33 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.10 Total: -11.85 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.30 Total: 15.63 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.09 -7.85 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229152472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.380 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds