Wall clock time and date at job start Mon Mar 30 2020 05:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48503 * 109.47037 * 264.54497 * 3 2 1 5 5 H 1.48498 * 109.46907 * 24.54290 * 3 2 1 6 6 H 1.48487 * 109.47228 * 144.54315 * 3 2 1 7 7 C 1.37876 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 4.63827 * 7 2 1 9 9 C 1.50703 * 120.00047 * 184.63076 * 7 2 1 10 10 H 1.08993 * 109.46828 * 4.62490 * 9 7 2 11 11 N 1.46898 * 109.46985 * 244.62374 * 9 7 2 12 12 C 1.46896 * 111.00171 * 85.00581 * 11 9 7 13 13 H 1.09003 * 110.85865 * 31.19864 * 12 11 9 14 14 C 1.54481 * 110.97225 * 154.99760 * 12 11 9 15 15 N 1.46764 * 105.46972 * 143.53447 * 14 12 11 16 16 C 1.34419 * 111.30442 * 342.97864 * 15 14 12 17 17 O 1.21281 * 124.93790 * 180.41214 * 16 15 14 18 18 C 1.51274 * 110.11367 * 0.41313 * 16 15 14 19 19 C 1.50696 * 109.46623 * 124.62541 * 9 7 2 20 20 C 1.38242 * 119.99892 * 254.88543 * 19 9 7 21 21 C 1.38236 * 120.00138 * 179.97438 * 20 19 9 22 22 C 1.38236 * 119.99701 * 359.97438 * 21 20 19 23 23 C 1.38229 * 120.00321 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00436 * 74.80612 * 19 9 7 25 25 H 0.97001 * 119.99809 * 359.97438 * 1 2 3 26 26 H 1.00903 * 110.99871 * 208.95584 * 11 9 7 27 27 H 1.08999 * 110.24077 * 262.52655 * 14 12 11 28 28 H 1.08992 * 110.24701 * 24.44731 * 14 12 11 29 29 H 0.97005 * 124.34613 * 163.00797 * 15 14 12 30 30 H 1.09001 * 110.48505 * 257.57055 * 18 16 15 31 31 H 1.09000 * 110.48354 * 134.93033 * 18 16 15 32 32 H 1.07998 * 119.99830 * 0.26617 * 20 19 9 33 33 H 1.07997 * 119.99936 * 179.97438 * 21 20 19 34 34 H 1.08004 * 119.99586 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.00290 * 179.97438 * 23 22 21 36 36 H 1.07996 * 119.99856 * 0.08022 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6120 1.9798 -1.3938 5 1 1.3938 2.6832 0.5816 6 1 3.4843 1.4762 0.8121 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1279 -0.0747 9 6 3.5079 -1.1961 0.1059 10 1 3.8630 -0.1765 0.2548 11 7 4.0847 -1.7399 -1.1308 12 6 4.2208 -0.6935 -2.1528 13 1 4.4059 0.2770 -1.6923 14 6 5.3352 -1.0481 -3.1622 15 7 4.8531 -0.5674 -4.4624 16 6 3.5288 -0.3384 -4.4379 17 8 2.8748 0.0567 -5.3798 18 6 2.9731 -0.6451 -3.0648 19 6 3.9283 -2.0502 1.2742 20 6 4.3733 -1.4557 2.4402 21 6 4.7584 -2.2391 3.5121 22 6 4.6980 -3.6169 3.4181 23 6 4.2520 -4.2114 2.2526 24 6 3.8673 -3.4280 1.1805 25 1 -0.4850 0.8401 0.0004 26 1 4.9712 -2.1867 -0.9504 27 1 6.2625 -0.5423 -2.8932 28 1 5.4889 -2.1268 -3.1908 29 1 5.4176 -0.4327 -5.2396 30 1 2.4638 -1.6088 -3.0660 31 1 2.2952 0.1453 -2.7424 32 1 4.4157 -0.3792 2.5153 33 1 5.1065 -1.7746 4.4228 34 1 4.9993 -4.2290 4.2554 35 1 4.2051 -5.2879 2.1790 36 1 3.5196 -3.8924 0.2696 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229152472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:16 Heat of formation + Delta-G solvation = -24.672069 kcal Electronic energy + Delta-G solvation = -19448.438992 eV Core-core repulsion = 16510.318549 eV Total energy + Delta-G solvation = -2938.120443 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30595 -40.06147 -38.06562 -36.28565 -34.23858 -32.53870 -31.57697 -30.19448 -28.98607 -27.43386 -24.31005 -23.33312 -21.95112 -21.68306 -21.29603 -19.12649 -18.39834 -17.64587 -17.37970 -16.38655 -16.23638 -16.06344 -15.74918 -15.34997 -14.96133 -14.71521 -14.44858 -14.33363 -14.09547 -13.92517 -13.70788 -13.17381 -12.82683 -12.68869 -12.56358 -12.07799 -12.00318 -11.73676 -11.56557 -11.43073 -11.03556 -10.69705 -10.13015 -9.61279 -9.37384 -9.09138 -8.27327 -6.27407 0.68339 0.72487 1.24810 1.26607 1.34800 1.49942 2.28148 2.40022 2.93025 3.20379 3.34352 3.46756 3.74232 4.09558 4.19447 4.28072 4.34954 4.42546 4.49706 4.62497 4.67869 4.73194 4.86881 4.94164 4.97618 5.13041 5.28732 5.38630 5.55623 5.76677 5.80203 5.80961 5.91955 5.98634 6.15365 6.33335 6.48738 6.74439 6.95308 7.22462 7.35975 8.89603 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.007772 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.523418 B = 3602.022733 C = 4506.167524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.025 3.975 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.239 1.239 7 C -0.465 4.465 8 H 0.036 0.964 9 C 0.215 3.785 10 H 0.022 0.978 11 N -0.663 5.663 12 C 0.082 3.918 13 H 0.048 0.952 14 C 0.109 3.891 15 N -0.711 5.711 16 C 0.518 3.482 17 O -0.588 6.588 18 C -0.137 4.137 19 C -0.071 4.071 20 C -0.145 4.145 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.262 0.738 26 H 0.341 0.659 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.421 0.579 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.005 -4.479 2.080 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.173 4.173 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.163 1.163 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.108 3.892 10 H 0.040 0.960 11 N -0.296 5.296 12 C -0.029 4.029 13 H 0.066 0.934 14 C -0.015 4.015 15 N -0.367 5.367 16 C 0.305 3.695 17 O -0.469 6.469 18 C -0.178 4.178 19 C -0.072 4.072 20 C -0.164 4.164 21 C -0.142 4.142 22 C -0.155 4.155 23 C -0.143 4.143 24 C -0.132 4.132 25 H 0.072 0.928 26 H 0.161 0.839 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.262 0.738 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.157 0.843 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.887 -4.418 1.467 16.555 hybrid contribution 0.150 1.644 -0.061 1.652 sum 16.036 -2.774 1.406 16.335 Atomic orbital electron populations 1.70018 1.08008 1.27533 1.52785 1.25703 0.95086 1.01712 0.94783 0.86404 0.79981 0.80653 0.79459 1.19064 1.22280 1.16257 1.20884 0.90067 0.92533 1.46917 0.94613 1.18681 0.93428 0.92135 0.84968 0.96024 1.60808 1.29640 1.29389 1.09785 1.22268 0.93393 0.94463 0.92773 0.93414 1.22426 0.96741 1.02065 0.80274 1.46035 1.08201 1.66855 1.15612 1.21202 0.83498 0.74950 0.89843 1.90671 1.64576 1.49165 1.42523 1.22298 0.99635 1.04154 0.91685 1.20299 0.95585 0.95006 0.96302 1.21144 1.01356 0.99694 0.94188 1.21309 1.00137 0.94427 0.98283 1.21362 1.00935 0.94780 0.98421 1.21418 0.99078 1.00529 0.93318 1.21052 0.99594 0.93063 0.99540 0.92839 0.83879 0.86787 0.87887 0.73797 0.87755 0.91788 0.87410 0.84309 0.83726 0.84295 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 2 C 0.03 1.40 5.47 84.65 0.46 1.87 16 3 Si 0.91 42.17 25.28 68.60 1.73 43.91 16 4 H -0.27 -11.99 6.83 99.48 0.68 -11.31 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.24 -9.90 6.22 99.48 0.62 -9.28 16 7 C -0.46 -24.50 8.44 25.60 0.22 -24.29 16 8 H 0.04 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.22 8.85 2.15 43.42 0.09 8.94 16 10 H 0.02 0.93 3.63 -2.39 -0.01 0.92 16 11 N -0.66 -22.30 5.66 -471.78 -2.67 -24.97 16 12 C 0.08 2.61 3.21 45.97 0.15 2.76 16 13 H 0.05 1.61 6.36 -2.39 -0.02 1.60 16 14 C 0.11 2.26 7.25 86.83 0.63 2.89 16 15 N -0.71 -17.58 6.24 -459.82 -2.87 -20.45 16 16 C 0.52 18.84 8.43 87.90 0.74 19.58 16 17 O -0.59 -26.19 18.03 -3.03 -0.05 -26.24 16 18 C -0.14 -5.36 6.01 30.59 0.18 -5.17 16 19 C -0.07 -2.64 4.65 -19.87 -0.09 -2.74 16 20 C -0.15 -4.95 9.67 22.27 0.22 -4.74 16 21 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 22 C -0.14 -3.46 10.05 22.27 0.22 -3.24 16 23 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 24 C -0.11 -3.85 9.07 22.27 0.20 -3.65 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.34 9.18 7.78 -89.69 -0.70 8.48 16 27 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 1.78 8.01 -2.39 -0.02 1.76 16 29 H 0.42 7.96 8.96 -92.70 -0.83 7.13 16 30 H 0.10 4.38 8.08 -2.39 -0.02 4.36 16 31 H 0.06 2.97 7.01 -2.39 -0.02 2.95 16 32 H 0.11 3.65 8.00 -2.91 -0.02 3.62 16 33 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 36 H 0.12 4.08 7.88 -2.91 -0.02 4.06 16 Total: -1.00 -70.99 298.20 -0.62 -71.61 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.53 Total: 27.83 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.47 Total: -14.23 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -5.24 Total: -102.87 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.73 Total: 43.91 kcal Total: -70.99 -0.62 -71.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229152472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.940 kcal (2) G-P(sol) polarization free energy of solvation -70.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds