Wall clock time and date at job start Mon Mar 30 2020 04:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37709 * 120.04832 * 2 1 4 4 C 1.38992 * 120.09323 * 180.25207 * 3 2 1 5 5 O 1.35709 * 119.90587 * 179.72117 * 4 3 2 6 6 C 1.39027 * 120.18806 * 359.44486 * 4 3 2 7 7 C 1.37672 * 120.09691 * 0.27664 * 6 4 3 8 8 C 1.39780 * 120.04602 * 179.69411 * 2 1 3 9 9 C 1.47487 * 120.09571 * 0.05216 * 8 2 1 10 10 O 1.21622 * 119.99754 * 304.15548 * 9 8 2 11 11 N 1.34771 * 120.00433 * 124.16133 * 9 8 2 12 12 C 1.36903 * 120.00171 * 185.04024 * 11 9 8 13 13 H 1.07995 * 120.00235 * 12.36268 * 12 11 9 14 14 C 1.39028 * 119.99820 * 192.35743 * 12 11 9 15 15 N 1.31374 * 120.00068 * 17.50693 * 14 12 11 16 16 Si 1.86800 * 119.99568 * 197.50606 * 14 12 11 17 17 H 1.48507 * 109.47220 * 90.00697 * 16 14 12 18 18 H 1.48510 * 109.46983 * 210.00000 * 16 14 12 19 19 H 1.48499 * 109.47815 * 330.00409 * 16 14 12 20 20 C 1.46504 * 120.00058 * 5.04025 * 11 9 8 21 21 C 1.47193 * 109.47050 * 92.83813 * 20 11 9 22 22 N 5.62106 * 128.12780 * 194.43854 * 2 1 3 23 23 H 1.08990 * 109.47336 * 274.65930 * 1 2 3 24 24 H 1.08997 * 109.47335 * 34.66184 * 1 2 3 25 25 H 1.09007 * 109.46986 * 154.65802 * 1 2 3 26 26 H 1.07998 * 119.95583 * 359.96597 * 3 2 1 27 27 H 0.96700 * 114.00337 * 269.72796 * 5 4 3 28 28 H 1.08005 * 119.95636 * 180.29709 * 6 4 3 29 29 H 1.08000 * 120.04830 * 179.97438 * 7 6 4 30 30 H 0.97010 * 119.99885 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.47341 * 212.84226 * 20 11 9 32 32 H 1.09002 * 109.46935 * 332.83629 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1920 0.0000 4 6 3.5864 1.1931 -0.0053 5 8 4.2621 2.3700 -0.0110 6 6 4.2865 -0.0080 0.0010 7 6 3.6050 -1.2043 0.0068 8 6 2.2069 -1.2100 0.0065 9 6 1.4726 -2.4890 0.0121 10 8 0.6563 -2.7177 0.8842 11 7 1.7062 -3.4045 -0.9490 12 6 0.9530 -4.5464 -1.0043 13 1 0.0516 -4.6278 -0.4150 14 6 1.3484 -5.6011 -1.8192 15 7 2.5837 -5.6616 -2.2621 16 14 0.1230 -6.9320 -2.2844 17 1 -0.5714 -6.5487 -3.5399 18 1 0.8405 -8.2162 -2.4880 19 1 -0.8743 -7.0894 -1.1954 20 6 2.7662 -3.1777 -1.9345 21 6 4.0142 -3.8010 -1.4649 22 7 4.9775 -4.2821 -1.1025 23 1 -0.3633 0.0835 1.0242 24 1 -0.3634 0.8452 -0.5844 25 1 -0.3633 -0.9288 -0.4399 26 1 1.6566 2.1273 -0.0006 27 1 4.4582 2.7067 -0.8960 28 1 5.3665 -0.0028 0.0017 29 1 4.1497 -2.1369 0.0113 30 1 2.8597 -6.3978 -2.8305 31 1 2.4761 -3.6189 -2.8881 32 1 2.9206 -2.1063 -2.0619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230322432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:16 Heat of formation + Delta-G solvation = -8.652907 kcal Electronic energy + Delta-G solvation = -19218.195230 eV Core-core repulsion = 16144.936335 eV Total energy + Delta-G solvation = -3073.258895 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.04921 -38.52853 -36.47658 -35.80875 -34.29142 -32.42933 -31.85548 -29.82317 -27.49754 -26.91682 -25.00668 -22.80195 -21.55311 -19.63200 -18.08791 -17.90113 -16.90011 -16.30443 -15.73393 -15.44955 -14.92463 -14.34899 -14.14446 -13.53645 -13.39637 -13.09536 -12.90365 -12.80423 -12.40561 -12.03132 -11.85008 -11.56805 -11.48544 -11.34302 -11.22035 -11.18696 -10.57212 -10.45123 -10.38510 -10.28356 -9.35636 -8.78587 -8.63388 -8.23786 -8.19252 -6.58579 -4.07734 1.22388 1.52849 3.04165 3.17027 3.21520 3.40727 3.72165 3.87542 4.02211 4.10778 4.27700 4.70884 4.84800 5.04727 5.06254 5.25848 5.40907 5.48553 5.64407 5.81484 5.96229 6.01569 6.06961 6.12197 6.39416 6.51189 6.52906 6.56545 6.80526 6.93578 7.37172 7.68907 7.78478 8.19199 8.79691 8.89845 9.09166 9.63358 10.44955 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.006855 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.766364 B = 4083.360449 C = 4827.637851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.031 4.031 3 C -0.151 4.151 4 C 0.108 3.892 5 O -0.500 6.500 6 C -0.153 4.153 7 C -0.081 4.081 8 C -0.107 4.107 9 C 0.490 3.510 10 O -0.566 6.566 11 N -0.433 5.433 12 C -0.308 4.308 13 H 0.113 0.887 14 C 0.030 3.970 15 N -0.880 5.880 16 Si 0.936 3.064 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.220 3.780 21 C 0.257 3.743 22 N -0.478 5.478 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.129 0.871 27 H 0.387 0.613 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.276 0.724 31 H 0.127 0.873 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 11.955 -3.496 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.032 4.032 3 C -0.170 4.170 4 C 0.064 3.936 5 O -0.310 6.310 6 C -0.171 4.171 7 C -0.100 4.100 8 C -0.110 4.110 9 C 0.279 3.721 10 O -0.449 6.449 11 N -0.152 5.152 12 C -0.435 4.435 13 H 0.131 0.869 14 C -0.173 4.173 15 N -0.519 5.519 16 Si 0.762 3.238 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.192 1.192 20 C 0.093 3.907 21 C -0.060 4.060 22 N -0.160 5.160 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.147 0.853 27 H 0.243 0.757 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.735 10.893 -2.051 11.109 hybrid contribution -0.532 -0.640 -0.952 1.264 sum 0.203 10.254 -3.003 10.686 Atomic orbital electron populations 1.20811 0.90287 1.03048 1.02796 1.19800 0.96501 0.90999 0.95916 1.21138 0.93191 0.98052 1.04590 1.18536 0.89827 0.84870 1.00406 1.84767 1.76674 1.36304 1.33302 1.21266 1.00360 0.91582 1.03915 1.21386 0.93198 0.98291 0.97109 1.20187 0.93563 0.94459 1.02793 1.17819 0.86552 0.84523 0.83245 1.90664 1.37997 1.79635 1.36634 1.43611 1.29072 1.18202 1.24305 1.19838 1.05738 0.91747 1.26215 0.86946 1.25333 0.96347 0.98430 0.97172 1.69649 1.14835 1.32998 1.34465 0.85758 0.79798 0.79065 0.79187 1.20013 1.20968 1.19225 1.18845 0.80045 0.96772 0.95026 1.28951 0.93181 0.91204 0.92688 1.80902 1.14708 1.11188 1.09155 0.90608 0.91926 0.90375 0.85340 0.75717 0.85414 0.85300 0.91253 0.85564 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.27 36.00 0.33 -1.36 16 2 C -0.03 -0.51 5.91 -104.24 -0.62 -1.12 16 3 C -0.15 -2.10 9.64 -39.50 -0.38 -2.48 16 4 C 0.11 1.49 6.71 -39.01 -0.26 1.23 16 5 O -0.50 -5.77 13.49 -18.83 -0.25 -6.03 16 6 C -0.15 -2.27 9.97 -39.50 -0.39 -2.66 16 7 C -0.08 -1.42 7.74 -39.20 -0.30 -1.72 16 8 C -0.11 -2.02 4.66 -104.96 -0.49 -2.51 16 9 C 0.49 11.24 5.96 -12.49 -0.07 11.17 16 10 O -0.57 -14.78 15.72 5.26 0.08 -14.69 16 11 N -0.43 -10.09 2.58 -119.14 -0.31 -10.40 16 12 C -0.31 -7.80 9.41 -14.99 -0.14 -7.94 16 13 H 0.11 2.98 7.32 -52.49 -0.38 2.60 16 14 C 0.03 0.73 5.05 -17.45 -0.09 0.65 16 15 N -0.88 -21.66 8.64 55.50 0.48 -21.18 16 16 Si 0.94 19.33 29.59 -169.99 -5.03 14.30 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 C 0.22 4.46 4.76 -6.83 -0.03 4.43 16 21 C 0.26 5.73 10.53 -20.76 -0.22 5.51 16 22 N -0.48 -11.39 18.51 42.16 0.78 -10.61 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 25 H 0.08 1.35 6.64 -51.93 -0.34 1.00 16 26 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 27 H 0.39 2.45 9.06 45.56 0.41 2.87 16 28 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.13 2.47 5.37 -52.49 -0.28 2.19 16 30 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.13 2.57 6.55 -51.93 -0.34 2.23 16 32 H 0.08 1.39 5.91 -51.93 -0.31 1.09 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -30.74 281.00 -4.75 -35.49 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.07 Total: 5.70 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.67 Total: 3.18 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.95 Total: -42.19 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.17 Total: -20.72 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.74 -4.75 -35.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230322432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.835 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds