Wall clock time and date at job start Mon Mar 30 2020 04:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37709 * 120.04832 * 2 1 4 4 C 1.38992 * 120.09323 * 180.25207 * 3 2 1 5 5 O 1.35709 * 119.90587 * 179.72117 * 4 3 2 6 6 C 1.39027 * 120.18806 * 359.44486 * 4 3 2 7 7 C 1.37672 * 120.09691 * 0.27664 * 6 4 3 8 8 C 1.39780 * 120.04602 * 179.69411 * 2 1 3 9 9 C 1.47487 * 120.09571 * 0.05216 * 8 2 1 10 10 O 1.21622 * 119.99754 * 304.15548 * 9 8 2 11 11 N 1.34771 * 120.00433 * 124.16133 * 9 8 2 12 12 C 1.36903 * 120.00171 * 185.04024 * 11 9 8 13 13 H 1.07995 * 120.00235 * 12.36268 * 12 11 9 14 14 C 1.39028 * 119.99820 * 192.35743 * 12 11 9 15 15 N 1.31374 * 120.00068 * 17.50693 * 14 12 11 16 16 Si 1.86800 * 119.99568 * 197.50606 * 14 12 11 17 17 H 1.48507 * 109.47220 * 90.00697 * 16 14 12 18 18 H 1.48510 * 109.46983 * 210.00000 * 16 14 12 19 19 H 1.48499 * 109.47815 * 330.00409 * 16 14 12 20 20 C 1.46504 * 120.00058 * 5.04025 * 11 9 8 21 21 C 1.47193 * 109.47050 * 92.83813 * 20 11 9 22 22 N 5.62106 * 128.12780 * 194.43854 * 2 1 3 23 23 H 1.08990 * 109.47336 * 274.65930 * 1 2 3 24 24 H 1.08997 * 109.47335 * 34.66184 * 1 2 3 25 25 H 1.09007 * 109.46986 * 154.65802 * 1 2 3 26 26 H 1.07998 * 119.95583 * 359.96597 * 3 2 1 27 27 H 0.96700 * 114.00337 * 269.72796 * 5 4 3 28 28 H 1.08005 * 119.95636 * 180.29709 * 6 4 3 29 29 H 1.08000 * 120.04830 * 179.97438 * 7 6 4 30 30 H 0.97010 * 119.99885 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.47341 * 212.84226 * 20 11 9 32 32 H 1.09002 * 109.46935 * 332.83629 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1920 0.0000 4 6 3.5864 1.1931 -0.0053 5 8 4.2621 2.3700 -0.0110 6 6 4.2865 -0.0080 0.0010 7 6 3.6050 -1.2043 0.0068 8 6 2.2069 -1.2100 0.0065 9 6 1.4726 -2.4890 0.0121 10 8 0.6563 -2.7177 0.8842 11 7 1.7062 -3.4045 -0.9490 12 6 0.9530 -4.5464 -1.0043 13 1 0.0516 -4.6278 -0.4150 14 6 1.3484 -5.6011 -1.8192 15 7 2.5837 -5.6616 -2.2621 16 14 0.1230 -6.9320 -2.2844 17 1 -0.5714 -6.5487 -3.5399 18 1 0.8405 -8.2162 -2.4880 19 1 -0.8743 -7.0894 -1.1954 20 6 2.7662 -3.1777 -1.9345 21 6 4.0142 -3.8010 -1.4649 22 7 4.9775 -4.2821 -1.1025 23 1 -0.3633 0.0835 1.0242 24 1 -0.3634 0.8452 -0.5844 25 1 -0.3633 -0.9288 -0.4399 26 1 1.6566 2.1273 -0.0006 27 1 4.4582 2.7067 -0.8960 28 1 5.3665 -0.0028 0.0017 29 1 4.1497 -2.1369 0.0113 30 1 2.8597 -6.3978 -2.8305 31 1 2.4761 -3.6189 -2.8881 32 1 2.9206 -2.1063 -2.0619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230322432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:16 Heat of formation + Delta-G solvation = -29.698461 kcal Electronic energy + Delta-G solvation = -19219.107833 eV Core-core repulsion = 16144.936335 eV Total energy + Delta-G solvation = -3074.171498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.47250 -39.93020 -37.82384 -37.44570 -36.13050 -33.94747 -33.39639 -31.13121 -29.22101 -28.17731 -26.72434 -24.14852 -22.83206 -21.13874 -19.89737 -18.96696 -18.47928 -18.04084 -17.11615 -16.84601 -16.30655 -15.97743 -15.62703 -15.10067 -14.88340 -14.56479 -14.33308 -14.09985 -13.89820 -13.59395 -13.41306 -13.17459 -12.95943 -12.88833 -12.72134 -12.55465 -12.30333 -12.16430 -12.11617 -11.38819 -11.18117 -10.56861 -10.06738 -9.82731 -9.49738 -8.45193 -6.02011 -0.01816 0.32873 1.38157 1.45785 1.56884 1.78156 1.99876 2.26147 2.34461 2.59219 2.95113 3.08951 3.25802 3.58487 3.82038 3.89517 3.94743 4.25608 4.44749 4.51562 4.62687 4.79250 4.83105 4.86545 4.95325 5.20098 5.31816 5.36471 5.42218 5.55700 5.79618 5.95416 6.33262 6.91407 7.00863 7.04286 7.26025 7.82507 8.56111 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.006855 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.766364 B = 4083.360449 C = 4827.637851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.033 4.033 3 C -0.141 4.141 4 C 0.132 3.868 5 O -0.501 6.501 6 C -0.152 4.152 7 C -0.088 4.088 8 C -0.137 4.137 9 C 0.489 3.511 10 O -0.610 6.610 11 N -0.445 5.445 12 C -0.339 4.339 13 H 0.088 0.912 14 C 0.003 3.997 15 N -0.894 5.894 16 Si 0.996 3.004 17 H -0.257 1.257 18 H -0.284 1.284 19 H -0.276 1.276 20 C 0.226 3.774 21 C 0.269 3.731 22 N -0.509 5.509 23 H 0.072 0.928 24 H 0.101 0.899 25 H 0.046 0.954 26 H 0.163 0.837 27 H 0.415 0.585 28 H 0.146 0.854 29 H 0.107 0.893 30 H 0.278 0.722 31 H 0.126 0.874 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 14.419 -4.458 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.034 4.034 3 C -0.159 4.159 4 C 0.087 3.913 5 O -0.315 6.315 6 C -0.170 4.170 7 C -0.107 4.107 8 C -0.141 4.141 9 C 0.280 3.720 10 O -0.496 6.496 11 N -0.163 5.163 12 C -0.466 4.466 13 H 0.106 0.894 14 C -0.198 4.198 15 N -0.533 5.533 16 Si 0.820 3.180 17 H -0.182 1.182 18 H -0.210 1.210 19 H -0.201 1.201 20 C 0.100 3.900 21 C -0.048 4.048 22 N -0.191 5.191 23 H 0.091 0.909 24 H 0.120 0.880 25 H 0.065 0.935 26 H 0.180 0.820 27 H 0.276 0.724 28 H 0.164 0.836 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.098 13.387 -3.055 13.775 hybrid contribution -0.573 -1.251 -0.606 1.503 sum 0.526 12.136 -3.661 12.687 Atomic orbital electron populations 1.20805 0.89785 1.03049 1.03027 1.19957 0.97028 0.90879 0.95570 1.21395 0.93372 0.98187 1.02937 1.18517 0.89843 0.85226 0.97690 1.84709 1.76175 1.34864 1.35721 1.21417 1.01293 0.91007 1.03333 1.21175 0.92481 0.98624 0.98423 1.19914 0.94004 0.93292 1.06847 1.18516 0.85722 0.85665 0.82112 1.90609 1.39958 1.80856 1.38211 1.43758 1.29523 1.17933 1.25101 1.19757 1.05974 0.93452 1.27399 0.89375 1.25993 0.97697 0.99724 0.96405 1.69733 1.15676 1.33476 1.34458 0.84876 0.77630 0.76449 0.79082 1.18201 1.21007 1.20099 1.19005 0.78380 0.98728 0.93894 1.29321 0.93155 0.90440 0.91845 1.80883 1.15812 1.12318 1.10114 0.90907 0.88027 0.93531 0.81952 0.72411 0.83578 0.87540 0.91176 0.85671 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 9.27 71.24 0.66 -2.51 16 2 C -0.03 -1.02 5.91 -19.62 -0.12 -1.14 16 3 C -0.14 -3.33 9.64 22.33 0.22 -3.12 16 4 C 0.13 3.08 6.71 22.64 0.15 3.24 16 5 O -0.50 -8.92 13.49 -90.30 -1.22 -10.14 16 6 C -0.15 -4.11 9.97 22.33 0.22 -3.89 16 7 C -0.09 -3.02 7.74 22.52 0.17 -2.85 16 8 C -0.14 -5.19 4.66 -20.08 -0.09 -5.28 16 9 C 0.49 23.26 5.96 86.68 0.52 23.78 16 10 O -0.61 -33.48 15.72 -4.10 -0.06 -33.55 16 11 N -0.44 -21.40 2.58 -649.09 -1.68 -23.08 16 12 C -0.34 -17.79 9.41 84.09 0.79 -17.00 16 13 H 0.09 4.96 7.32 -2.91 -0.02 4.94 16 14 C 0.00 0.17 5.05 84.95 0.43 0.60 16 15 N -0.89 -44.39 8.64 21.68 0.19 -44.21 16 16 Si 1.00 40.03 29.59 68.60 2.03 42.06 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 20 C 0.23 9.24 4.76 84.57 0.40 9.65 16 21 C 0.27 12.13 10.53 89.44 0.94 13.07 16 22 N -0.51 -24.57 18.51 20.00 0.37 -24.20 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.10 2.06 8.11 -2.39 -0.02 2.04 16 25 H 0.05 1.63 6.64 -2.38 -0.02 1.61 16 26 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 27 H 0.42 2.90 9.06 -74.06 -0.67 2.22 16 28 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.11 4.13 5.37 -2.91 -0.02 4.12 16 30 H 0.28 13.27 8.31 -92.70 -0.77 12.50 16 31 H 0.13 5.13 6.55 -2.39 -0.02 5.12 16 32 H 0.12 3.93 5.91 -2.39 -0.01 3.92 16 Total: -1.00 -68.60 281.00 4.44 -64.17 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.51 Total: 14.39 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: 4.30 Total: 14.55 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -1.12 Total: -91.49 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.28 Total: -43.69 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -68.60 4.44 -64.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230322432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.467 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds