Wall clock time and date at job start Mon Mar 30 2020 04:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86802 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47450 * 270.00288 * 3 2 1 5 5 H 1.48502 * 109.46982 * 30.00544 * 3 2 1 6 6 H 1.48494 * 109.47121 * 150.00197 * 3 2 1 7 7 C 1.39891 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00049 * 163.97768 * 7 2 1 9 9 C 1.41025 * 119.99691 * 343.96870 * 7 2 1 10 10 C 1.40666 * 120.27080 * 333.65743 * 9 7 2 11 11 C 1.38000 * 119.77151 * 179.72089 * 10 9 7 12 12 N 1.39858 * 119.84411 * 180.26651 * 11 10 9 13 13 C 1.46497 * 120.00305 * 180.23492 * 12 11 10 14 14 C 1.50705 * 109.47079 * 180.02562 * 13 12 11 15 15 N 1.34496 * 126.28919 * 269.71507 * 14 13 12 16 16 C 1.31133 * 105.61196 * 179.90564 * 15 14 13 17 17 O 1.33641 * 106.89835 * 0.35153 * 16 15 14 18 18 N 1.21300 * 109.81179 * 359.77206 * 17 16 15 19 19 C 1.39605 * 120.31862 * 0.50624 * 11 10 9 20 20 C 1.38045 * 120.55090 * 359.48745 * 19 11 10 21 21 C 1.38738 * 120.22210 * 0.25197 * 20 19 11 22 22 N 1.38862 * 120.16658 * 179.97438 * 21 20 19 23 23 H 0.96999 * 119.99610 * 359.97438 * 1 2 3 24 24 H 1.08007 * 120.11204 * 359.97166 * 10 9 7 25 25 H 0.96997 * 119.99430 * 0.23916 * 12 11 10 26 26 H 1.09001 * 109.47283 * 299.99974 * 13 12 11 27 27 H 1.08998 * 109.47121 * 60.00642 * 13 12 11 28 28 H 1.07991 * 126.54721 * 180.12580 * 16 15 14 29 29 H 1.08003 * 119.72081 * 179.75932 * 19 11 10 30 30 H 1.08007 * 119.89288 * 180.27658 * 20 19 11 31 31 H 0.96999 * 120.00288 * 0.02562 * 22 21 20 32 32 H 0.97005 * 120.00300 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4405 2.6526 0.7002 6 1 3.5406 1.4401 0.7000 7 6 2.0085 -1.2115 -0.0005 8 1 3.0570 -1.2295 -0.2587 9 6 1.3444 -2.4092 0.3362 10 6 0.2150 -2.3822 1.1743 11 6 -0.4304 -3.5598 1.4925 12 7 -1.5568 -3.5342 2.3211 13 6 -2.2415 -4.7827 2.6653 14 6 -3.4147 -4.4815 3.5621 15 7 -3.3984 -4.4371 4.9062 16 6 -4.6246 -4.1409 5.2644 17 8 -5.3398 -4.0239 4.1415 18 7 -4.6290 -4.2225 3.1788 19 6 0.0387 -4.7771 0.9954 20 6 1.1458 -4.8189 0.1719 21 6 1.8087 -3.6482 -0.1670 22 7 2.9226 -3.6917 -0.9950 23 1 -0.4849 0.8401 0.0004 24 1 -0.1483 -1.4427 1.5640 25 1 -1.8847 -2.6897 2.6677 26 1 -2.5955 -5.2660 1.7547 27 1 -1.5489 -5.4461 3.1832 28 1 -4.9879 -4.0188 6.2740 29 1 -0.4715 -5.6933 1.2538 30 1 1.4969 -5.7661 -0.2103 31 1 3.2388 -4.5420 -1.3384 32 1 3.3841 -2.8717 -1.2307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231778416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:01 Heat of formation + Delta-G solvation = 100.824141 kcal Electronic energy + Delta-G solvation = -18315.562239 eV Core-core repulsion = 15279.343377 eV Total energy + Delta-G solvation = -3036.218863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.70048 -38.03465 -36.44109 -34.98275 -33.46473 -32.75823 -31.43173 -29.44110 -27.98009 -25.34908 -24.70235 -24.18225 -22.37869 -21.03766 -19.73783 -18.16683 -18.02841 -17.08090 -16.25322 -15.81881 -15.49591 -15.08347 -14.72065 -14.36721 -13.57230 -13.28050 -12.63158 -12.45063 -12.28731 -12.01938 -11.78340 -11.74154 -11.36292 -11.17947 -11.10667 -10.98490 -10.42047 -10.26366 -9.93273 -9.82336 -9.35062 -9.05636 -7.84742 -7.24495 -6.62400 -5.59898 -4.07877 1.11043 2.12391 2.90033 2.92765 3.13215 3.17198 3.29403 3.43968 3.64346 4.03145 4.07760 4.49975 4.80477 5.00383 5.41557 5.48277 5.72466 5.81126 5.89568 5.97244 6.33069 6.58519 7.04173 7.12181 7.29162 7.43601 7.63678 7.83907 7.94654 8.08105 8.10612 8.42769 8.65835 8.80681 8.91042 8.97704 9.24070 9.31685 10.36768 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.005144 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.713439 B = 5441.773718 C = 6514.047525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.072 0.928 9 C 0.097 3.903 10 C -0.197 4.197 11 C 0.177 3.823 12 N -0.756 5.756 13 C 0.231 3.769 14 C 0.164 3.836 15 N -0.475 5.475 16 C 0.150 3.850 17 O 0.079 5.921 18 N -0.368 5.368 19 C -0.255 4.255 20 C -0.152 4.152 21 C 0.088 3.912 22 N -0.888 5.888 23 H 0.275 0.725 24 H 0.117 0.883 25 H 0.390 0.610 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.262 0.738 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.374 0.626 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -5.149 7.654 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.090 0.910 9 C 0.091 3.909 10 C -0.221 4.221 11 C 0.080 3.920 12 N -0.394 5.394 13 C 0.104 3.896 14 C -0.109 4.109 15 N -0.208 5.208 16 C -0.091 4.091 17 O 0.018 5.982 18 N -0.073 5.073 19 C -0.278 4.278 20 C -0.176 4.176 21 C -0.013 4.013 22 N -0.431 5.431 23 H 0.086 0.914 24 H 0.135 0.865 25 H 0.223 0.777 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.278 0.722 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.199 0.801 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.614 -5.256 6.894 10.903 hybrid contribution 0.238 1.134 0.232 1.182 sum -6.375 -4.122 7.126 10.412 Atomic orbital electron populations 1.69879 1.07290 1.28445 1.37028 1.25758 0.94655 1.00726 0.92808 0.86434 0.80601 0.81387 0.78913 1.19820 1.20396 1.18738 1.19122 0.96882 0.91093 1.42421 0.91023 1.16954 0.92572 0.90335 0.91014 1.20458 1.01313 0.95016 1.05337 1.17436 0.87256 0.94427 0.92923 1.44113 1.32117 1.05426 1.57701 1.19190 0.86599 0.89738 0.94112 1.26170 0.94506 1.00884 0.89336 1.71936 1.19996 1.18249 1.10579 1.30521 0.86067 0.96402 0.96132 1.85327 1.37369 1.63322 1.12231 1.74736 1.04993 1.18119 1.09487 1.19595 1.03095 0.94235 1.10919 1.19689 0.98978 0.94719 1.04221 1.17873 0.92064 0.93912 0.97471 1.41812 1.33717 1.09226 1.58318 0.91419 0.86505 0.77736 0.90673 0.90190 0.72229 0.89632 0.89593 0.80054 0.78304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.17 10.97 55.55 0.61 -20.56 16 2 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 3 Si 0.90 19.04 29.59 -169.99 -5.03 14.01 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.23 8.48 -37.91 -0.32 -12.56 16 8 H 0.07 1.79 6.71 -52.49 -0.35 1.44 16 9 C 0.10 2.57 5.57 -106.66 -0.59 1.98 16 10 C -0.20 -5.17 8.49 -38.75 -0.33 -5.50 16 11 C 0.18 4.19 6.64 -83.77 -0.56 3.63 16 12 N -0.76 -15.24 5.73 -59.81 -0.34 -15.59 16 13 C 0.23 3.89 5.53 -5.19 -0.03 3.86 16 14 C 0.16 2.53 7.59 -156.37 -1.19 1.34 16 15 N -0.47 -6.43 11.55 -13.72 -0.16 -6.59 16 16 C 0.15 1.35 13.40 51.98 0.70 2.04 16 17 O 0.08 0.91 11.31 18.11 0.20 1.11 16 18 N -0.37 -5.54 12.16 30.88 0.38 -5.17 16 19 C -0.25 -5.78 9.31 -39.14 -0.36 -6.15 16 20 C -0.15 -3.47 9.86 -39.47 -0.39 -3.86 16 21 C 0.09 2.13 6.79 -83.22 -0.56 1.57 16 22 N -0.89 -18.17 8.98 32.75 0.29 -17.88 16 23 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 24 H 0.12 3.21 6.23 -52.48 -0.33 2.88 16 25 H 0.39 7.83 8.47 -40.82 -0.35 7.49 16 26 H 0.08 1.26 7.94 -51.93 -0.41 0.85 16 27 H 0.08 1.30 7.94 -51.93 -0.41 0.89 16 28 H 0.26 0.65 8.06 -52.49 -0.42 0.23 16 29 H 0.09 1.73 6.69 -52.48 -0.35 1.38 16 30 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 31 H 0.37 6.46 8.83 -40.82 -0.36 6.10 16 32 H 0.39 7.80 7.06 -40.82 -0.29 7.51 16 LS Contribution 282.70 15.07 4.26 4.26 Total: -1.00 -31.20 282.70 -6.34 -37.54 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -2.83 Total: 20.65 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.73 Total: -11.79 kcal Atomic # 7 Polarization: -66.56 SS G_CDS: 0.78 Total: -65.79 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.20 Total: 1.11 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.20 -6.34 -37.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231778416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.366 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds