Wall clock time and date at job start Mon Mar 30 2020 04:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86802 * 120.00132 * 2 1 4 4 H 1.48500 * 109.47450 * 270.00288 * 3 2 1 5 5 H 1.48502 * 109.46982 * 30.00544 * 3 2 1 6 6 H 1.48494 * 109.47121 * 150.00197 * 3 2 1 7 7 C 1.39891 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00049 * 163.97768 * 7 2 1 9 9 C 1.41025 * 119.99691 * 343.96870 * 7 2 1 10 10 C 1.40666 * 120.27080 * 333.65743 * 9 7 2 11 11 C 1.38000 * 119.77151 * 179.72089 * 10 9 7 12 12 N 1.39858 * 119.84411 * 180.26651 * 11 10 9 13 13 C 1.46497 * 120.00305 * 180.23492 * 12 11 10 14 14 C 1.50705 * 109.47079 * 180.02562 * 13 12 11 15 15 N 1.34496 * 126.28919 * 269.71507 * 14 13 12 16 16 C 1.31133 * 105.61196 * 179.90564 * 15 14 13 17 17 O 1.33641 * 106.89835 * 0.35153 * 16 15 14 18 18 N 1.21300 * 109.81179 * 359.77206 * 17 16 15 19 19 C 1.39605 * 120.31862 * 0.50624 * 11 10 9 20 20 C 1.38045 * 120.55090 * 359.48745 * 19 11 10 21 21 C 1.38738 * 120.22210 * 0.25197 * 20 19 11 22 22 N 1.38862 * 120.16658 * 179.97438 * 21 20 19 23 23 H 0.96999 * 119.99610 * 359.97438 * 1 2 3 24 24 H 1.08007 * 120.11204 * 359.97166 * 10 9 7 25 25 H 0.96997 * 119.99430 * 0.23916 * 12 11 10 26 26 H 1.09001 * 109.47283 * 299.99974 * 13 12 11 27 27 H 1.08998 * 109.47121 * 60.00642 * 13 12 11 28 28 H 1.07991 * 126.54721 * 180.12580 * 16 15 14 29 29 H 1.08003 * 119.72081 * 179.75932 * 19 11 10 30 30 H 1.08007 * 119.89288 * 180.27658 * 20 19 11 31 31 H 0.96999 * 120.00288 * 0.02562 * 22 21 20 32 32 H 0.97005 * 120.00300 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4405 2.6526 0.7002 6 1 3.5406 1.4401 0.7000 7 6 2.0085 -1.2115 -0.0005 8 1 3.0570 -1.2295 -0.2587 9 6 1.3444 -2.4092 0.3362 10 6 0.2150 -2.3822 1.1743 11 6 -0.4304 -3.5598 1.4925 12 7 -1.5568 -3.5342 2.3211 13 6 -2.2415 -4.7827 2.6653 14 6 -3.4147 -4.4815 3.5621 15 7 -3.3984 -4.4371 4.9062 16 6 -4.6246 -4.1409 5.2644 17 8 -5.3398 -4.0239 4.1415 18 7 -4.6290 -4.2225 3.1788 19 6 0.0387 -4.7771 0.9954 20 6 1.1458 -4.8189 0.1719 21 6 1.8087 -3.6482 -0.1670 22 7 2.9226 -3.6917 -0.9950 23 1 -0.4849 0.8401 0.0004 24 1 -0.1483 -1.4427 1.5640 25 1 -1.8847 -2.6897 2.6677 26 1 -2.5955 -5.2660 1.7547 27 1 -1.5489 -5.4461 3.1832 28 1 -4.9879 -4.0188 6.2740 29 1 -0.4715 -5.6933 1.2538 30 1 1.4969 -5.7661 -0.2103 31 1 3.2388 -4.5420 -1.3384 32 1 3.3841 -2.8717 -1.2307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231778416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:00 Heat of formation + Delta-G solvation = 76.571079 kcal Electronic energy + Delta-G solvation = -18316.613931 eV Core-core repulsion = 15279.343377 eV Total energy + Delta-G solvation = -3037.270554 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.70946 -39.81182 -37.74316 -36.36286 -35.34052 -34.03530 -32.86424 -31.33272 -29.53273 -27.07195 -26.43008 -25.14795 -23.64468 -22.73750 -21.52303 -19.27296 -19.08361 -18.84709 -17.85235 -17.27709 -16.87987 -16.68749 -16.42020 -15.94067 -14.98102 -14.77540 -14.25246 -14.05725 -13.78970 -13.55752 -13.45004 -13.17651 -12.91616 -12.80417 -12.67044 -12.16770 -12.11742 -11.84771 -11.53277 -11.30956 -11.13178 -10.93833 -9.50846 -9.17147 -8.51687 -7.38133 -6.02168 0.22130 1.10513 1.11064 1.40547 1.48113 1.53544 1.62151 2.17527 2.26483 2.61404 2.89587 2.98523 3.11670 3.76922 3.93858 4.04268 4.39858 4.51418 4.58647 4.76732 4.81690 5.01474 5.21168 5.27818 5.38716 5.60268 5.82355 6.02446 6.10955 6.21081 6.53176 6.89399 6.99404 7.06367 7.10645 7.18075 7.43881 7.66704 8.49535 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.005144 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.713439 B = 5441.773718 C = 6514.047525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.061 3.939 10 C -0.222 4.222 11 C 0.172 3.828 12 N -0.754 5.754 13 C 0.233 3.767 14 C 0.146 3.854 15 N -0.510 5.510 16 C 0.184 3.816 17 O 0.087 5.913 18 N -0.393 5.393 19 C -0.255 4.255 20 C -0.156 4.156 21 C 0.074 3.926 22 N -0.878 5.878 23 H 0.278 0.722 24 H 0.094 0.906 25 H 0.386 0.614 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.324 0.676 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.391 0.609 32 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 -5.694 8.650 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.523 4.523 8 H 0.094 0.906 9 C 0.056 3.944 10 C -0.247 4.247 11 C 0.073 3.927 12 N -0.390 5.390 13 C 0.107 3.893 14 C -0.126 4.126 15 N -0.243 5.243 16 C -0.055 4.055 17 O 0.024 5.976 18 N -0.098 5.098 19 C -0.278 4.278 20 C -0.180 4.180 21 C -0.028 4.028 22 N -0.422 5.422 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.219 0.781 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.339 0.661 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.219 0.781 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.971 -5.842 7.886 12.038 hybrid contribution 0.230 1.194 0.030 1.217 sum -6.741 -4.647 7.916 11.388 Atomic orbital electron populations 1.69973 1.08819 1.29412 1.38107 1.26595 0.95371 1.04018 0.92010 0.85314 0.79072 0.76767 0.79129 1.18978 1.20024 1.18364 1.19399 0.97265 0.91982 1.43666 0.90554 1.17338 0.93389 0.91708 0.91938 1.20417 1.02460 0.95111 1.06696 1.17534 0.87959 0.94086 0.93159 1.44146 1.31349 1.06662 1.56856 1.19153 0.87284 0.88187 0.94685 1.25861 0.94228 1.02469 0.90074 1.71903 1.22416 1.20324 1.09636 1.31787 0.84301 0.92241 0.97145 1.85286 1.36875 1.62905 1.12563 1.74727 1.05117 1.18780 1.11198 1.19949 1.02991 0.94788 1.10108 1.20062 0.98677 0.95524 1.03772 1.18052 0.93129 0.93654 0.97987 1.41689 1.32646 1.10288 1.57535 0.91135 0.88782 0.78129 0.90702 0.89580 0.66146 0.87020 0.86646 0.78078 0.78159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.72 10.97 21.82 0.24 -45.48 16 2 C 0.03 1.69 5.16 85.23 0.44 2.13 16 3 Si 0.98 39.64 29.59 68.60 2.03 41.67 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.49 -26.56 8.48 23.35 0.20 -26.36 16 8 H 0.08 3.88 6.71 -2.91 -0.02 3.86 16 9 C 0.06 3.36 5.57 -21.18 -0.12 3.25 16 10 C -0.22 -12.11 8.49 22.81 0.19 -11.92 16 11 C 0.17 8.25 6.64 38.13 0.25 8.50 16 12 N -0.75 -30.88 5.73 -343.14 -1.97 -32.85 16 13 C 0.23 7.79 5.53 85.64 0.47 8.26 16 14 C 0.15 4.39 7.59 138.46 1.05 5.44 16 15 N -0.51 -12.92 11.55 -315.39 -3.64 -16.57 16 16 C 0.18 2.71 13.40 130.51 1.75 4.46 16 17 O 0.09 1.81 11.31 74.86 0.85 2.66 16 18 N -0.39 -11.48 12.16 -60.40 -0.73 -12.21 16 19 C -0.25 -11.36 9.31 22.55 0.21 -11.15 16 20 C -0.16 -6.96 9.86 22.34 0.22 -6.74 16 21 C 0.07 3.59 6.79 38.97 0.26 3.85 16 22 N -0.88 -35.25 8.98 -50.31 -0.45 -35.70 16 23 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 24 H 0.09 5.46 6.23 -2.91 -0.02 5.44 16 25 H 0.39 16.05 8.47 -92.71 -0.79 15.27 16 26 H 0.08 2.48 7.94 -2.39 -0.02 2.46 16 27 H 0.09 2.75 7.94 -2.39 -0.02 2.73 16 28 H 0.32 -0.16 8.06 -2.92 -0.02 -0.18 16 29 H 0.11 4.32 6.69 -2.91 -0.02 4.30 16 30 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.39 12.87 8.83 -92.71 -0.82 12.05 16 32 H 0.39 15.52 7.06 -92.70 -0.65 14.87 16 Total: -1.00 -69.96 282.70 0.21 -69.75 By element: Atomic # 1 Polarization: 50.05 SS G_CDS: -1.05 Total: 49.00 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: 4.93 Total: -20.27 kcal Atomic # 7 Polarization: -136.25 SS G_CDS: -6.56 Total: -142.81 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.85 Total: 2.66 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -69.96 0.21 -69.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231778416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.320 kcal (2) G-P(sol) polarization free energy of solvation -69.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds