Wall clock time and date at job start Mon Mar 30 2020 04:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 C 1.38464 * 110.99688 * 236.04620 * 2 1 3 13 13 C 1.39176 * 120.02013 * 63.68406 * 12 2 1 14 14 C 1.37519 * 120.23187 * 179.74330 * 13 12 2 15 15 C 1.40075 * 120.27082 * 0.54874 * 14 13 12 16 16 C 1.47426 * 119.98213 * 179.72437 * 15 14 13 17 17 O 1.21513 * 120.00146 * 179.97438 * 16 15 14 18 18 O 1.34757 * 120.00104 * 359.97438 * 16 15 14 19 19 C 1.39408 * 120.03611 * 359.70626 * 15 14 13 20 20 C 1.39243 * 119.77009 * 0.02562 * 19 15 14 21 21 C 1.43203 * 120.13435 * 180.02562 * 20 19 15 22 22 N 3.53904 * 118.78089 * 150.00097 * 2 1 3 23 23 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 24 24 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 25 25 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 26 26 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 27 27 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 28 28 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 29 29 H 1.07993 * 119.88612 * 0.02562 * 13 12 2 30 30 H 1.08003 * 119.86852 * 180.27308 * 14 13 12 31 31 H 0.96700 * 117.00271 * 180.02562 * 18 16 15 32 32 H 1.08004 * 120.11363 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 2.6606 3.9504 4.1326 10 1 1.4303 5.6462 2.9115 11 1 0.3059 3.6289 3.6508 12 6 1.9652 -0.7220 -1.0723 13 6 1.7159 -0.2960 -2.3736 14 6 2.2110 -1.0068 -3.4416 15 6 2.9601 -2.1711 -3.2287 16 6 3.4827 -2.9316 -4.3785 17 8 4.1329 -3.9414 -4.1941 18 8 3.2392 -2.5069 -5.6340 19 6 3.2121 -2.6110 -1.9300 20 6 2.7163 -1.8894 -0.8473 21 6 2.9709 -2.3339 0.4900 22 7 3.1729 -2.6863 1.5509 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 0.5740 0.8525 26 1 3.0798 1.3443 -0.1082 27 1 1.5612 1.9273 -0.8309 28 1 2.9859 4.9182 0.7767 29 1 1.1355 0.5984 -2.5451 30 1 2.0177 -0.6685 -4.4489 31 1 3.6021 -3.0387 -6.3555 32 1 3.7899 -3.5083 -1.7644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234265003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:25 Heat of formation + Delta-G solvation = -25.728259 kcal Electronic energy + Delta-G solvation = -18366.014670 eV Core-core repulsion = 15292.015332 eV Total energy + Delta-G solvation = -3073.999338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61272 -39.48534 -36.50079 -36.14287 -35.90940 -32.76571 -31.46697 -30.29168 -27.45543 -25.91188 -24.14037 -23.41026 -22.11586 -20.46664 -19.19639 -17.90399 -16.67778 -16.45192 -15.84020 -15.75414 -15.48312 -14.89723 -14.21539 -14.04062 -13.73407 -13.44278 -13.25114 -12.85159 -12.55520 -12.25005 -12.14146 -12.07008 -11.68186 -11.57482 -11.35342 -11.10203 -10.86205 -10.72573 -10.70858 -10.15129 -9.48025 -9.05823 -8.71476 -8.58587 -7.79613 -6.16753 -4.19278 0.52013 0.94754 2.32846 2.79341 3.15699 3.23625 3.26248 3.32737 3.35588 3.97723 4.17029 4.24492 4.44365 4.80231 4.88820 5.05261 5.19779 5.30722 5.44501 5.75659 5.85038 5.94826 6.03090 6.07720 6.29974 6.30265 6.50705 6.56201 6.99269 7.04682 7.61187 7.72596 7.73212 7.89894 7.94615 8.30554 8.86481 9.45724 10.93877 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.004975 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.995946 B = 5626.399912 C = 6124.867118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.527 5.527 3 C 0.199 3.801 4 C -0.514 4.514 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.210 3.790 13 C -0.168 4.168 14 C -0.023 4.023 15 C -0.155 4.155 16 C 0.534 3.466 17 O -0.518 6.518 18 O -0.512 6.512 19 C 0.000 4.000 20 C -0.033 4.033 21 C 0.276 3.724 22 N -0.417 5.417 23 H 0.051 0.949 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.034 0.966 27 H 0.005 0.995 28 H 0.264 0.736 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.413 0.587 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.394 -9.630 -12.453 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.248 5.248 3 C 0.077 3.923 4 C -0.553 4.553 5 H 0.084 0.916 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.111 3.889 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.156 4.156 16 C 0.380 3.620 17 O -0.408 6.408 18 O -0.324 6.324 19 C -0.022 4.022 20 C -0.037 4.037 21 C -0.040 4.040 22 N -0.092 5.092 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.272 0.728 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.846 -10.224 -10.002 14.422 hybrid contribution -0.190 0.897 -0.781 1.204 sum -2.036 -9.328 -10.783 14.402 Atomic orbital electron populations 1.22307 0.85493 1.00655 1.01950 1.59610 1.08657 1.19228 1.37350 1.19908 0.95728 0.78898 0.97760 1.21067 1.35691 0.96980 1.01522 0.91582 1.24958 0.94997 0.97205 0.97112 1.69938 1.37826 1.11645 1.33999 0.86453 0.78996 0.78390 0.83354 1.20521 1.21177 1.19738 1.19420 0.89114 0.89885 0.90433 1.21872 1.02923 1.01734 0.92282 1.21475 0.91348 0.91361 1.00048 1.18700 1.07334 0.99018 0.90547 1.20700 0.76341 0.82260 0.82747 1.90902 1.38116 1.25544 1.86283 1.84569 1.73859 1.57354 1.16583 1.21096 0.93953 0.97763 0.89351 1.15873 1.04546 0.97025 0.86264 1.25009 0.93626 0.93050 0.92329 1.81138 1.08417 1.09272 1.10347 0.92997 0.95538 0.89413 0.94755 0.97700 0.92667 0.83979 0.84044 0.72813 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.18 60.07 0.55 1.27 16 2 N -0.53 -10.42 4.06 -180.07 -0.73 -11.15 16 3 C 0.20 4.76 4.29 -4.97 -0.02 4.74 16 4 C -0.51 -13.68 8.46 -34.44 -0.29 -13.97 16 5 H 0.07 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 7 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.21 3.48 4.66 -83.62 -0.39 3.09 16 13 C -0.17 -2.31 8.59 -39.50 -0.34 -2.65 16 14 C -0.02 -0.26 9.59 -39.15 -0.38 -0.63 16 15 C -0.15 -1.85 5.87 -105.03 -0.62 -2.47 16 16 C 0.53 6.01 8.26 34.47 0.28 6.30 16 17 O -0.52 -7.16 17.11 -19.28 -0.33 -7.49 16 18 O -0.51 -4.08 12.66 -40.65 -0.51 -4.59 16 19 C 0.00 -0.01 9.29 -38.77 -0.36 -0.37 16 20 C -0.03 -0.51 5.75 -106.69 -0.61 -1.12 16 21 C 0.28 4.92 14.80 -22.47 -0.33 4.59 16 22 N -0.42 -8.22 18.54 41.84 0.78 -7.45 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.41 7.29 -51.93 -0.38 0.03 16 25 H 0.09 1.63 6.76 -51.93 -0.35 1.28 16 26 H 0.03 0.90 8.05 -51.93 -0.42 0.48 16 27 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.14 1.92 7.08 -52.49 -0.37 1.55 16 30 H 0.14 1.27 7.59 -52.48 -0.40 0.87 16 31 H 0.41 1.40 9.11 45.56 0.42 1.82 16 32 H 0.15 1.74 7.63 -52.48 -0.40 1.34 16 LS Contribution 295.25 15.07 4.45 4.45 Total: -1.00 -31.68 295.25 -5.46 -37.13 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -2.22 Total: -2.59 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.60 Total: 0.29 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.78 Total: -43.21 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.84 Total: -12.09 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.68 -5.46 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234265003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.405 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds