Wall clock time and date at job start Mon Mar 30 2020 04:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47166 * 89.99890 * 8 6 4 10 10 H 1.48491 * 109.47208 * 210.00081 * 8 6 4 11 11 H 1.48505 * 109.47202 * 330.00211 * 8 6 4 12 12 C 1.38464 * 110.99688 * 236.04620 * 2 1 3 13 13 C 1.39176 * 120.02013 * 63.68406 * 12 2 1 14 14 C 1.37519 * 120.23187 * 179.74330 * 13 12 2 15 15 C 1.40075 * 120.27082 * 0.54874 * 14 13 12 16 16 C 1.47426 * 119.98213 * 179.72437 * 15 14 13 17 17 O 1.21513 * 120.00146 * 179.97438 * 16 15 14 18 18 O 1.34757 * 120.00104 * 359.97438 * 16 15 14 19 19 C 1.39408 * 120.03611 * 359.70626 * 15 14 13 20 20 C 1.39243 * 119.77009 * 0.02562 * 19 15 14 21 21 C 1.43203 * 120.13435 * 180.02562 * 20 19 15 22 22 N 3.53904 * 118.78089 * 150.00097 * 2 1 3 23 23 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 24 24 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 25 25 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 26 26 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 27 27 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 28 28 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 29 29 H 1.07993 * 119.88612 * 0.02562 * 13 12 2 30 30 H 1.08003 * 119.86852 * 180.27308 * 14 13 12 31 31 H 0.96700 * 117.00271 * 180.02562 * 18 16 15 32 32 H 1.08004 * 120.11363 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 2.6606 3.9504 4.1326 10 1 1.4303 5.6462 2.9115 11 1 0.3059 3.6289 3.6508 12 6 1.9652 -0.7220 -1.0723 13 6 1.7159 -0.2960 -2.3736 14 6 2.2110 -1.0068 -3.4416 15 6 2.9601 -2.1711 -3.2287 16 6 3.4827 -2.9316 -4.3785 17 8 4.1329 -3.9414 -4.1941 18 8 3.2392 -2.5069 -5.6340 19 6 3.2121 -2.6110 -1.9300 20 6 2.7163 -1.8894 -0.8473 21 6 2.9709 -2.3339 0.4900 22 7 3.1729 -2.6863 1.5509 23 1 -0.3634 -1.0252 0.0708 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 0.5740 0.8525 26 1 3.0798 1.3443 -0.1082 27 1 1.5612 1.9273 -0.8309 28 1 2.9859 4.9182 0.7767 29 1 1.1355 0.5984 -2.5451 30 1 2.0177 -0.6685 -4.4489 31 1 3.6021 -3.0387 -6.3555 32 1 3.7899 -3.5083 -1.7644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234265003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:25 Heat of formation + Delta-G solvation = -46.671997 kcal Electronic energy + Delta-G solvation = -18366.922859 eV Core-core repulsion = 15292.015332 eV Total energy + Delta-G solvation = -3074.907526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.62477 -40.57933 -37.84795 -37.30106 -36.99068 -34.74773 -32.61377 -31.53082 -29.27188 -27.27460 -25.41642 -24.77483 -23.39878 -21.79442 -20.21284 -18.88987 -18.45808 -17.60174 -17.18902 -16.71321 -16.69773 -16.57849 -15.66870 -15.31814 -14.89976 -14.74462 -14.67627 -14.20979 -14.03350 -13.75108 -13.51241 -13.36298 -13.09076 -12.84936 -12.66316 -12.52970 -12.48273 -12.36261 -12.06920 -11.71227 -11.41875 -10.64472 -10.15172 -9.90982 -9.33748 -8.23664 -6.32467 -0.56812 -0.14321 1.31983 1.40319 1.42253 1.52043 1.67395 2.05908 2.06817 2.37984 2.75829 2.90462 3.02647 3.10961 3.75295 3.97082 4.06637 4.12850 4.31112 4.55983 4.64141 4.72517 4.94645 5.03440 5.06018 5.08151 5.20588 5.28502 5.50531 5.62574 5.64301 6.01606 6.07024 6.49697 6.64611 6.80138 7.02808 7.36619 8.86892 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.004975 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.995946 B = 5626.399912 C = 6124.867118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.541 5.541 3 C 0.218 3.782 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.961 3.039 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.265 1.265 12 C 0.183 3.817 13 C -0.167 4.167 14 C 0.003 3.997 15 C -0.148 4.148 16 C 0.545 3.455 17 O -0.545 6.545 18 O -0.499 6.499 19 C 0.010 3.990 20 C -0.045 4.045 21 C 0.289 3.711 22 N -0.461 5.461 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.002 0.998 27 H -0.004 1.004 28 H 0.266 0.734 29 H 0.145 0.855 30 H 0.177 0.823 31 H 0.436 0.564 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -10.020 -14.353 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.263 5.263 3 C 0.095 3.905 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.786 3.214 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.189 1.189 12 C 0.085 3.915 13 C -0.187 4.187 14 C -0.017 4.017 15 C -0.150 4.150 16 C 0.391 3.609 17 O -0.438 6.438 18 O -0.313 6.313 19 C -0.011 4.011 20 C -0.049 4.049 21 C -0.026 4.026 22 N -0.136 5.136 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.020 0.980 27 H 0.014 0.986 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.194 0.806 31 H 0.299 0.701 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.430 -10.636 -11.938 16.172 hybrid contribution -0.005 0.946 -0.376 1.018 sum -2.435 -9.689 -12.313 15.857 Atomic orbital electron populations 1.22305 0.84174 1.01851 1.01835 1.59343 1.10081 1.16985 1.39855 1.19452 0.93684 0.81220 0.96181 1.21395 1.35331 0.97404 1.02496 0.92241 1.25740 0.94940 0.97933 1.00186 1.70034 1.38881 1.11999 1.35741 0.85504 0.78804 0.77632 0.79431 1.20713 1.20360 1.18893 1.19443 0.90841 0.90504 0.90739 1.21855 1.03181 1.02065 0.91604 1.21743 0.89110 0.89993 1.00811 1.18859 1.06527 0.98996 0.90599 1.20392 0.75603 0.81445 0.83451 1.90913 1.39336 1.26689 1.86840 1.84506 1.73380 1.57420 1.15965 1.21162 0.93201 0.97581 0.89199 1.15888 1.05664 0.97631 0.85748 1.25470 0.92457 0.91967 0.92690 1.81128 1.10113 1.10852 1.11549 0.90770 0.93897 0.91491 0.97964 0.98629 0.92523 0.83702 0.80609 0.70107 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.49 9.18 127.69 1.17 2.67 16 2 N -0.54 -21.62 4.06 -723.62 -2.94 -24.56 16 3 C 0.22 10.69 4.29 85.56 0.37 11.06 16 4 C -0.53 -28.66 8.46 25.60 0.22 -28.44 16 5 H 0.06 3.23 7.12 -2.91 -0.02 3.21 16 6 C 0.01 0.61 5.46 84.66 0.46 1.07 16 7 N -0.93 -53.17 13.29 21.45 0.28 -52.88 16 8 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 12 C 0.18 5.96 4.66 38.90 0.18 6.14 16 13 C -0.17 -4.29 8.59 22.33 0.19 -4.10 16 14 C 0.00 0.05 9.59 22.55 0.22 0.27 16 15 C -0.15 -3.10 5.87 -20.13 -0.12 -3.22 16 16 C 0.55 10.37 8.26 70.24 0.58 10.95 16 17 O -0.55 -13.61 17.11 19.79 0.34 -13.27 16 18 O -0.50 -5.71 12.66 -56.68 -0.72 -6.43 16 19 C 0.01 0.23 9.29 22.79 0.21 0.45 16 20 C -0.04 -1.37 5.75 -21.21 -0.12 -1.49 16 21 C 0.29 10.47 14.80 88.33 1.31 11.78 16 22 N -0.46 -18.62 18.54 19.00 0.35 -18.27 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.04 1.29 7.29 -2.39 -0.02 1.27 16 25 H 0.07 2.52 6.76 -2.38 -0.02 2.50 16 26 H 0.00 0.12 8.05 -2.39 -0.02 0.10 16 27 H 0.00 -0.20 7.45 -2.39 -0.02 -0.22 16 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.15 3.66 7.08 -2.91 -0.02 3.64 16 30 H 0.18 2.25 7.59 -2.91 -0.02 2.22 16 31 H 0.44 1.02 9.11 -74.06 -0.67 0.35 16 32 H 0.16 3.48 7.63 -2.91 -0.02 3.46 16 Total: -1.00 -69.29 295.25 4.51 -64.78 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: 0.50 Total: -1.90 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 4.67 Total: 7.12 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -2.30 Total: -95.72 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.38 Total: -19.70 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -69.29 4.51 -64.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234265003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.104 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds