Wall clock time and date at job start Mon Mar 30 2020 04:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47505 * 2 1 4 4 C 1.50697 * 109.47148 * 120.00098 * 2 1 3 5 5 H 1.07998 * 120.00300 * 119.99770 * 4 2 1 6 6 C 1.37881 * 120.00209 * 299.99577 * 4 2 1 7 7 N 1.31516 * 119.99198 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00265 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47092 * 90.00232 * 8 6 4 10 10 H 1.48504 * 109.46954 * 209.99962 * 8 6 4 11 11 H 1.48501 * 109.47474 * 330.00307 * 8 6 4 12 12 C 1.53005 * 109.46886 * 239.99795 * 2 1 3 13 13 C 1.50700 * 109.46988 * 65.00186 * 12 2 1 14 14 N 1.30971 * 126.44389 * 90.00047 * 13 12 2 15 15 C 1.35195 * 105.58031 * 179.97438 * 14 13 12 16 16 C 1.48527 * 126.41009 * 179.73580 * 15 14 13 17 17 C 1.39626 * 120.54419 * 179.72896 * 16 15 14 18 18 C 1.38459 * 118.28439 * 179.75458 * 17 16 15 19 19 N 1.32364 * 119.17749 * 0.52107 * 18 17 16 20 20 C 1.31830 * 121.03405 * 359.71278 * 19 18 17 21 21 N 1.31661 * 121.88338 * 0.03253 * 20 19 18 22 22 N 1.30699 * 107.18604 * 0.02562 * 15 14 13 23 23 O 1.21291 * 110.10560 * 359.97438 * 22 15 14 24 24 H 1.09001 * 109.46961 * 300.00063 * 1 2 3 25 25 H 1.08998 * 109.47089 * 59.99809 * 1 2 3 26 26 H 1.09003 * 109.47505 * 180.02562 * 1 2 3 27 27 H 0.97007 * 119.99590 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47316 * 304.99960 * 12 2 1 29 29 H 1.09001 * 109.46723 * 185.00161 * 12 2 1 30 30 H 1.07999 * 120.85470 * 359.97438 * 17 16 15 31 31 H 1.08006 * 120.40999 * 180.25624 * 18 17 16 32 32 H 1.08000 * 119.05591 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.6306 -0.5439 4.4118 10 1 1.3445 -0.9488 5.1123 11 1 2.4881 -2.5653 3.7122 12 6 2.0399 -0.7213 -1.2493 13 6 1.6412 0.0570 -2.4766 14 7 2.3357 1.0035 -3.0572 15 6 1.5903 1.4066 -4.1107 16 6 1.9435 2.4707 -5.0848 17 6 1.0801 2.7853 -6.1361 18 6 1.4536 3.7888 -7.0139 19 7 2.6118 4.4043 -6.8353 20 6 3.4067 4.0799 -5.8350 21 7 3.0904 3.1360 -4.9733 22 7 0.4979 0.6892 -4.1078 23 8 0.5125 -0.0889 -3.1775 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 1.6053 -1.7199 -1.2952 29 1 3.1262 -0.7996 -1.2056 30 1 0.1435 2.2619 -6.2591 31 1 0.8099 4.0630 -7.8367 32 1 4.3443 4.6033 -5.7191 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235096551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:15 Heat of formation + Delta-G solvation = 111.183973 kcal Electronic energy + Delta-G solvation = -18284.515081 eV Core-core repulsion = 15248.745454 eV Total energy + Delta-G solvation = -3035.769627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.31856 -41.14697 -36.00934 -35.51577 -33.81269 -33.04801 -31.98018 -30.61550 -26.73738 -26.00597 -25.26961 -24.63066 -23.21866 -21.75161 -19.89291 -18.14859 -17.87272 -17.58756 -16.51201 -16.26427 -15.71807 -15.04454 -14.69082 -14.51739 -14.03873 -13.74980 -13.44934 -12.88493 -12.21988 -12.09245 -11.75342 -11.31439 -11.18232 -11.02828 -10.89650 -10.79087 -10.66063 -10.33230 -10.23378 -9.95018 -9.76552 -9.56360 -9.21156 -9.00548 -8.43493 -6.08318 -4.16914 0.26222 0.70721 1.55516 2.55056 3.02423 3.21637 3.27470 3.34678 3.36962 3.62406 3.76940 3.88874 4.36490 4.45325 4.55198 4.75144 5.07561 5.23591 5.27202 5.35753 5.82457 5.94498 6.01161 6.13135 6.25187 6.46912 6.67932 6.77592 6.98012 7.15457 7.59761 7.78042 7.80404 7.99766 8.25380 8.33574 8.85545 9.48957 10.97979 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.039282 B = 0.004033 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.629788 B = 6941.076168 C = 7233.083022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 H 0.036 0.964 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.028 4.028 13 C 0.223 3.777 14 N -0.461 5.461 15 C 0.193 3.807 16 C 0.263 3.737 17 C -0.196 4.196 18 C 0.153 3.847 19 N -0.518 5.518 20 C 0.300 3.700 21 N -0.483 5.483 22 N -0.371 5.371 23 O 0.086 5.914 24 H 0.087 0.913 25 H 0.003 0.997 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.156 0.844 31 H 0.176 0.824 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 2.319 -15.620 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.067 4.067 13 C 0.004 3.996 14 N -0.193 5.193 15 C -0.078 4.078 16 C 0.116 3.884 17 C -0.220 4.220 18 C -0.014 4.014 19 N -0.232 5.232 20 C 0.012 3.988 21 N -0.198 5.198 22 N -0.079 5.079 23 O 0.023 5.977 24 H 0.105 0.895 25 H 0.022 0.978 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.174 0.826 31 H 0.193 0.807 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.608 3.280 -16.014 16.358 hybrid contribution -0.548 -0.865 0.935 1.386 sum 0.060 2.414 -15.079 15.272 Atomic orbital electron populations 1.21898 0.98164 0.99571 1.00300 1.18766 0.93109 0.96362 0.88809 0.94609 1.21004 1.31933 1.12769 0.89900 0.92030 1.24951 0.94840 0.94910 0.99128 1.69893 1.36205 1.22755 1.23635 0.86522 0.78612 0.80016 0.82428 1.20594 1.21233 1.19757 1.20945 1.02763 0.97414 0.85566 1.29722 0.80705 0.93362 0.95841 1.72185 1.29023 1.11627 1.06475 1.23205 0.89410 0.99038 0.96098 1.18212 0.90138 0.90260 0.89800 1.22880 1.02415 1.00555 0.96109 1.23224 0.92220 0.89357 0.96549 1.68395 1.05102 1.28054 1.21686 1.25090 0.98583 0.90161 0.84946 1.68330 1.16740 1.07061 1.27643 1.74771 1.20588 1.05295 1.07261 1.85303 1.38981 1.44662 1.28769 0.89463 0.97801 0.94778 0.92805 0.88867 0.87855 0.82635 0.80673 0.77902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.78 37.15 0.33 -2.93 16 2 C 0.05 1.15 2.29 -91.77 -0.21 0.94 16 3 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.52 -13.23 8.56 -34.44 -0.29 -13.53 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 13 C 0.22 4.19 6.90 -12.99 -0.09 4.10 16 14 N -0.46 -9.14 11.57 -9.90 -0.11 -9.26 16 15 C 0.19 3.47 7.94 -156.14 -1.24 2.24 16 16 C 0.26 4.06 6.80 -82.57 -0.56 3.50 16 17 C -0.20 -2.26 9.83 -38.98 -0.38 -2.65 16 18 C 0.15 1.46 11.30 -17.24 -0.19 1.27 16 19 N -0.52 -5.81 10.43 -14.63 -0.15 -5.96 16 20 C 0.30 3.56 12.28 -92.24 -1.13 2.43 16 21 N -0.48 -7.40 10.40 -11.09 -0.12 -7.52 16 22 N -0.37 -6.50 11.93 30.95 0.37 -6.13 16 23 O 0.09 1.55 10.73 18.04 0.19 1.74 16 24 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 25 H 0.00 0.07 6.93 -51.93 -0.36 -0.29 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.16 1.54 7.95 -52.49 -0.42 1.12 16 31 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 288.16 15.07 4.34 4.34 Total: -1.00 -30.15 288.16 -7.06 -37.21 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.17 Total: -2.08 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -4.02 Total: -3.71 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.61 Total: -52.85 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.19 Total: 1.74 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.15 -7.06 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235096551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.391 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds