Wall clock time and date at job start Mon Mar 30 2020 04:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47109 * 2 1 4 4 C 1.50693 * 109.47180 * 119.99659 * 2 1 3 5 5 H 1.08002 * 119.99810 * 120.00060 * 4 2 1 6 6 C 1.37881 * 120.00471 * 300.00423 * 4 2 1 7 7 N 1.31517 * 119.99605 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46916 * 59.99516 * 8 6 4 10 10 H 1.48493 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46758 * 299.99992 * 8 6 4 12 12 C 1.53002 * 109.47168 * 240.00001 * 2 1 3 13 13 C 1.50701 * 109.46874 * 64.99965 * 12 2 1 14 14 N 1.30972 * 126.44550 * 90.00214 * 13 12 2 15 15 C 1.35201 * 105.58268 * 179.97438 * 14 13 12 16 16 C 1.48464 * 126.41136 * 179.97438 * 15 14 13 17 17 C 1.39415 * 120.10046 * 180.02562 * 16 15 14 18 18 N 1.32015 * 119.87563 * 179.70441 * 17 16 15 19 19 C 1.32192 * 120.08196 * 0.55538 * 18 17 16 20 20 C 1.38485 * 120.20056 * 359.44213 * 19 18 17 21 21 N 1.31978 * 120.12125 * 0.28049 * 20 19 18 22 22 N 1.30729 * 107.17932 * 0.22372 * 15 14 13 23 23 O 1.21294 * 110.10053 * 359.61047 * 22 15 14 24 24 H 1.08997 * 109.47071 * 60.00457 * 1 2 3 25 25 H 1.09004 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47023 * 300.00075 * 1 2 3 27 27 H 0.96996 * 120.00091 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47124 * 304.99633 * 12 2 1 29 29 H 1.09002 * 109.46965 * 184.99850 * 12 2 1 30 30 H 1.07998 * 120.06110 * 0.02562 * 17 16 15 31 31 H 1.08002 * 119.90180 * 179.72679 * 19 18 17 32 32 H 1.08001 * 119.93664 * 180.30249 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3226 -1.1194 4.0080 9 1 3.8075 -1.1188 4.0077 10 1 1.8279 -0.4191 5.2204 11 1 1.8282 -2.5198 4.0082 12 6 2.0400 -0.7213 -1.2493 13 6 1.6413 0.0571 -2.4766 14 7 2.3357 1.0037 -3.0572 15 6 1.5903 1.4068 -4.1107 16 6 1.9456 2.4671 -5.0873 17 6 1.0735 2.7784 -6.1295 18 7 1.3912 3.7260 -6.9920 19 6 2.5389 4.3712 -6.8745 20 6 3.4077 4.0647 -5.8405 21 7 3.0957 3.1225 -4.9705 22 7 0.4958 0.6920 -4.1052 23 8 0.5127 -0.0892 -3.1776 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.7094 1.1619 3.4843 28 1 1.6055 -1.7198 -1.2951 29 1 3.1264 -0.7994 -1.2056 30 1 0.1374 2.2489 -6.2280 31 1 2.7979 5.1429 -7.5843 32 1 4.3421 4.5979 -5.7457 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235096852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:20 Heat of formation + Delta-G solvation = 110.542800 kcal Electronic energy + Delta-G solvation = -18292.786804 eV Core-core repulsion = 15256.989374 eV Total energy + Delta-G solvation = -3035.797430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.26310 -41.23249 -35.96386 -35.45837 -34.38093 -33.04460 -31.64865 -30.49081 -26.73193 -25.88482 -25.25143 -24.78144 -23.17390 -21.72346 -19.85264 -17.99927 -17.84472 -17.45255 -16.97402 -16.29141 -16.17692 -15.06091 -14.66750 -14.46257 -13.90413 -13.53956 -13.11953 -12.87393 -12.14101 -12.04073 -11.86182 -11.73251 -11.32418 -11.27928 -10.96699 -10.80856 -10.67869 -10.37632 -10.22173 -9.93852 -9.55941 -9.40707 -9.08684 -8.99643 -8.42321 -6.07221 -4.15923 0.15612 0.79593 1.56412 2.53801 3.08134 3.25124 3.29186 3.34459 3.36739 3.54144 3.79471 3.93881 4.22550 4.37707 4.52538 4.82010 4.97642 5.19300 5.24446 5.26192 5.82145 5.95486 6.01371 6.14875 6.27817 6.48784 6.79343 6.94895 6.99948 7.17002 7.43927 7.60773 7.81585 8.00973 8.26583 8.38211 8.86313 9.49804 10.99024 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.039628 B = 0.004038 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.407513 B = 6931.864632 C = 7216.660863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.028 4.028 13 C 0.222 3.778 14 N -0.464 5.464 15 C 0.202 3.798 16 C 0.163 3.837 17 C 0.085 3.915 18 N -0.435 5.435 19 C 0.055 3.945 20 C 0.058 3.942 21 N -0.400 5.400 22 N -0.376 5.376 23 O 0.085 5.915 24 H 0.003 0.997 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.263 0.737 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.159 3.510 -15.442 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.067 4.067 13 C 0.003 3.997 14 N -0.196 5.196 15 C -0.069 4.069 16 C 0.023 3.977 17 C -0.076 4.076 18 N -0.149 5.149 19 C -0.106 4.106 20 C -0.104 4.104 21 N -0.116 5.116 22 N -0.084 5.084 23 O 0.022 5.978 24 H 0.022 0.978 25 H 0.052 0.948 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.195 0.805 31 H 0.193 0.807 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.784 3.993 -15.939 16.528 hybrid contribution 0.318 -0.385 1.017 1.133 sum 2.102 3.608 -14.922 15.495 Atomic orbital electron populations 1.21900 0.98160 0.99565 1.00308 1.18757 0.93108 0.96337 0.88796 0.94636 1.20971 1.31997 1.12777 0.89929 0.92094 1.24949 0.94852 0.94895 0.99102 1.69880 1.36223 1.22661 1.23737 0.86584 0.79254 0.79696 0.82049 1.20147 1.21306 1.20139 1.20931 1.02714 0.97421 0.85607 1.29688 0.80844 0.93333 0.95788 1.72173 1.29148 1.11776 1.06548 1.23094 0.89211 0.98803 0.95835 1.18906 0.92319 0.93696 0.92828 1.23722 1.00006 0.94025 0.89850 1.68560 1.16904 1.04903 1.24491 1.23999 0.90362 0.98461 0.97804 1.23910 1.01125 0.94324 0.91034 1.68345 1.15084 1.03954 1.24230 1.74773 1.20582 1.05509 1.07566 1.85297 1.38993 1.44481 1.28991 0.97764 0.94792 0.89482 0.92751 0.88896 0.87921 0.80523 0.80680 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.78 37.16 0.33 -2.95 16 2 C 0.05 1.17 2.29 -91.77 -0.21 0.96 16 3 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.52 -13.30 8.56 -34.44 -0.29 -13.59 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 13 C 0.22 4.22 6.90 -12.99 -0.09 4.13 16 14 N -0.46 -9.25 11.57 -9.89 -0.11 -9.36 16 15 C 0.20 3.66 7.92 -156.14 -1.24 2.42 16 16 C 0.16 2.54 6.76 -82.76 -0.56 1.98 16 17 C 0.09 1.12 10.88 -17.03 -0.19 0.93 16 18 N -0.43 -5.12 10.49 -12.78 -0.13 -5.25 16 19 C 0.05 0.49 11.22 -17.31 -0.19 0.30 16 20 C 0.06 0.59 11.22 -17.40 -0.20 0.39 16 21 N -0.40 -5.99 10.44 -9.57 -0.10 -6.09 16 22 N -0.38 -6.66 11.86 30.96 0.37 -6.30 16 23 O 0.08 1.54 10.73 18.04 0.19 1.73 16 24 H 0.00 0.07 6.93 -51.93 -0.36 -0.29 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.18 2.07 7.87 -52.49 -0.41 1.65 16 31 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -30.43 287.97 -5.89 -36.31 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -3.17 Total: -2.23 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.88 Total: -4.49 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.65 Total: -51.06 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.19 Total: 1.73 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.43 -5.89 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235096852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.856 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds