Wall clock time and date at job start Mon Mar 30 2020 04:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47816 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99947 * 2 1 3 5 5 H 1.08004 * 120.00316 * 239.99962 * 4 2 1 6 6 C 1.37875 * 120.00139 * 60.00716 * 4 2 1 7 7 N 1.31526 * 119.99581 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00421 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47377 * 89.99289 * 8 6 4 10 10 H 1.48499 * 109.47349 * 209.99611 * 8 6 4 11 11 H 1.48502 * 109.46928 * 329.99616 * 8 6 4 12 12 C 1.53006 * 109.47165 * 120.00588 * 2 1 3 13 13 C 1.50703 * 109.46492 * 294.99524 * 12 2 1 14 14 N 1.30974 * 126.44200 * 90.00713 * 13 12 2 15 15 C 1.35192 * 105.57763 * 180.02562 * 14 13 12 16 16 C 1.48522 * 126.41003 * 179.97438 * 15 14 13 17 17 C 1.39620 * 120.55211 * 179.97438 * 16 15 14 18 18 C 1.38459 * 118.29088 * 180.02562 * 17 16 15 19 19 N 1.32367 * 119.17916 * 359.97438 * 18 17 16 20 20 C 1.31822 * 121.03264 * 0.02562 * 19 18 17 21 21 N 1.31664 * 121.88727 * 0.02562 * 20 19 18 22 22 N 1.30700 * 107.18884 * 0.23587 * 15 14 13 23 23 O 1.21288 * 110.10555 * 359.58132 * 22 15 14 24 24 H 1.08995 * 109.47445 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47231 * 299.99873 * 1 2 3 26 26 H 1.09002 * 109.47410 * 59.99668 * 1 2 3 27 27 H 0.97002 * 119.99679 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.46988 * 174.99717 * 12 2 1 29 29 H 1.08994 * 109.47364 * 54.99466 * 12 2 1 30 30 H 1.08002 * 120.85035 * 0.04231 * 17 16 15 31 31 H 1.08004 * 120.40660 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.05841 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1615 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7120 12 6 2.0400 -0.7214 1.2492 13 6 1.6413 0.0570 2.4766 14 7 0.5352 -0.0860 3.1633 15 6 0.6122 0.8158 4.1675 16 6 -0.4047 1.0465 5.2251 17 6 -0.1982 2.0152 6.2091 18 6 -1.1767 2.1907 7.1728 19 7 -2.2668 1.4411 7.1297 20 6 -2.4313 0.5346 6.1868 21 7 -1.5274 0.3325 5.2510 22 7 1.7464 1.4507 4.0304 23 8 2.3498 1.0234 3.0689 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7082 1.1611 -3.4844 28 1 3.1262 -0.7996 1.2055 29 1 1.6053 -1.7199 1.2951 30 1 0.7016 2.6125 6.2180 31 1 -1.0524 2.9307 7.9496 32 1 -3.3334 -0.0592 6.1817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235406069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:18 Heat of formation + Delta-G solvation = 112.487403 kcal Electronic energy + Delta-G solvation = -18316.460740 eV Core-core repulsion = 15280.747634 eV Total energy + Delta-G solvation = -3035.713106 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.31532 -41.14523 -36.07895 -35.44720 -33.78402 -33.04132 -31.96370 -30.61556 -26.75377 -25.98203 -25.21325 -24.62917 -23.15812 -21.82630 -19.90571 -18.06429 -17.83891 -17.57018 -16.51068 -16.28463 -15.71643 -15.04105 -14.70506 -14.51100 -14.19826 -13.84389 -13.15863 -12.73992 -12.45774 -12.09206 -11.69099 -11.30990 -11.18437 -11.02842 -10.79060 -10.71695 -10.67579 -10.28186 -10.19680 -9.93313 -9.77437 -9.56274 -9.20753 -8.96924 -8.42856 -6.07650 -4.16483 0.26305 0.70725 1.55638 2.55902 3.02405 3.21443 3.27453 3.34721 3.36917 3.62506 3.77282 3.88874 4.36584 4.45449 4.55697 4.75156 5.07735 5.23992 5.27207 5.35937 5.83210 5.94748 6.01660 6.13818 6.25759 6.49234 6.67998 6.89963 7.11270 7.22066 7.61089 7.78146 7.81884 8.03228 8.27257 8.33755 8.85864 9.49370 10.98407 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.044002 B = 0.004024 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.179061 B = 6956.363740 C = 7247.319427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 H 0.032 0.968 4 C -0.518 4.518 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.028 4.028 13 C 0.221 3.779 14 N -0.456 5.456 15 C 0.193 3.807 16 C 0.263 3.737 17 C -0.196 4.196 18 C 0.153 3.847 19 N -0.518 5.518 20 C 0.300 3.700 21 N -0.482 5.482 22 N -0.372 5.372 23 O 0.084 5.916 24 H 0.031 0.969 25 H 0.009 0.991 26 H 0.083 0.917 27 H 0.262 0.738 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.176 0.824 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 1.360 15.775 15.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 H 0.050 0.950 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.067 4.067 13 C 0.002 3.998 14 N -0.188 5.188 15 C -0.078 4.078 16 C 0.116 3.884 17 C -0.220 4.220 18 C -0.014 4.014 19 N -0.232 5.232 20 C 0.012 3.988 21 N -0.197 5.197 22 N -0.079 5.079 23 O 0.021 5.979 24 H 0.050 0.950 25 H 0.028 0.972 26 H 0.101 0.899 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.174 0.826 31 H 0.193 0.807 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.581 1.368 16.261 16.521 hybrid contribution 1.029 0.081 -1.035 1.462 sum -1.552 1.450 15.226 15.374 Atomic orbital electron populations 1.21831 0.97770 0.99674 1.00296 1.18753 0.93540 0.95951 0.88760 0.94973 1.21013 1.31939 1.12767 0.89926 0.92052 1.24952 0.94861 0.94892 0.99117 1.69904 1.36217 1.22718 1.23609 0.86527 0.79274 0.79345 0.82459 1.20612 1.21241 1.19758 1.20941 1.02538 0.97547 0.85646 1.29740 0.85271 0.88215 0.96576 1.72217 1.19923 1.21771 1.04864 1.23220 0.93275 0.94513 0.96775 1.18217 0.89520 0.90959 0.89713 1.22879 1.02979 0.99904 0.96211 1.23223 0.87509 0.94956 0.95673 1.68393 1.23110 1.06615 1.25124 1.25085 0.96988 0.92061 0.84665 1.68340 1.01363 1.25290 1.24738 1.74774 1.07954 1.20316 1.04895 1.85285 1.41622 1.41391 1.29605 0.94996 0.97165 0.89880 0.92823 0.88794 0.87964 0.82645 0.80686 0.77925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.78 37.15 0.33 -3.00 16 2 C 0.05 1.16 2.29 -91.77 -0.21 0.95 16 3 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.52 -13.22 8.56 -34.44 -0.29 -13.51 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.62 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.66 16 13 C 0.22 4.12 6.96 -12.99 -0.09 4.03 16 14 N -0.46 -8.90 10.89 -9.90 -0.11 -9.01 16 15 C 0.19 3.44 7.94 -156.15 -1.24 2.20 16 16 C 0.26 4.04 6.80 -82.57 -0.56 3.47 16 17 C -0.20 -2.26 9.82 -38.98 -0.38 -2.64 16 18 C 0.15 1.46 11.30 -17.24 -0.19 1.26 16 19 N -0.52 -5.79 10.43 -14.63 -0.15 -5.94 16 20 C 0.30 3.54 12.28 -92.24 -1.13 2.41 16 21 N -0.48 -7.35 10.40 -11.09 -0.12 -7.47 16 22 N -0.37 -6.46 11.93 30.95 0.37 -6.09 16 23 O 0.08 1.50 11.29 18.03 0.20 1.70 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.22 6.84 -51.93 -0.36 -0.13 16 26 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 30 H 0.16 1.53 7.95 -52.49 -0.42 1.12 16 31 H 0.18 0.96 8.06 -52.48 -0.42 0.53 16 32 H 0.20 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 288.00 15.07 4.34 4.34 Total: -1.00 -30.09 288.00 -7.04 -37.13 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -3.17 Total: -2.11 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -4.02 Total: -3.89 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.62 Total: -52.50 kcal Atomic # 8 Polarization: 1.50 SS G_CDS: 0.20 Total: 1.70 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.09 -7.04 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.616 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds