Wall clock time and date at job start Mon Mar 30 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47816 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99947 * 2 1 3 5 5 H 1.08004 * 120.00316 * 239.99962 * 4 2 1 6 6 C 1.37875 * 120.00139 * 60.00716 * 4 2 1 7 7 N 1.31526 * 119.99581 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00421 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47377 * 89.99289 * 8 6 4 10 10 H 1.48499 * 109.47349 * 209.99611 * 8 6 4 11 11 H 1.48502 * 109.46928 * 329.99616 * 8 6 4 12 12 C 1.53006 * 109.47165 * 120.00588 * 2 1 3 13 13 C 1.50703 * 109.46492 * 294.99524 * 12 2 1 14 14 N 1.30974 * 126.44200 * 90.00713 * 13 12 2 15 15 C 1.35192 * 105.57763 * 180.02562 * 14 13 12 16 16 C 1.48522 * 126.41003 * 179.97438 * 15 14 13 17 17 C 1.39620 * 120.55211 * 179.97438 * 16 15 14 18 18 C 1.38459 * 118.29088 * 180.02562 * 17 16 15 19 19 N 1.32367 * 119.17916 * 359.97438 * 18 17 16 20 20 C 1.31822 * 121.03264 * 0.02562 * 19 18 17 21 21 N 1.31664 * 121.88727 * 0.02562 * 20 19 18 22 22 N 1.30700 * 107.18884 * 0.23587 * 15 14 13 23 23 O 1.21288 * 110.10555 * 359.58132 * 22 15 14 24 24 H 1.08995 * 109.47445 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47231 * 299.99873 * 1 2 3 26 26 H 1.09002 * 109.47410 * 59.99668 * 1 2 3 27 27 H 0.97002 * 119.99679 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.46988 * 174.99717 * 12 2 1 29 29 H 1.08994 * 109.47364 * 54.99466 * 12 2 1 30 30 H 1.08002 * 120.85035 * 0.04231 * 17 16 15 31 31 H 1.08004 * 120.40660 * 180.02562 * 18 17 16 32 32 H 1.07996 * 119.05841 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1615 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7565 -3.7120 12 6 2.0400 -0.7214 1.2492 13 6 1.6413 0.0570 2.4766 14 7 0.5352 -0.0860 3.1633 15 6 0.6122 0.8158 4.1675 16 6 -0.4047 1.0465 5.2251 17 6 -0.1982 2.0152 6.2091 18 6 -1.1767 2.1907 7.1728 19 7 -2.2668 1.4411 7.1297 20 6 -2.4313 0.5346 6.1868 21 7 -1.5274 0.3325 5.2510 22 7 1.7464 1.4507 4.0304 23 8 2.3498 1.0234 3.0689 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7082 1.1611 -3.4844 28 1 3.1262 -0.7996 1.2055 29 1 1.6053 -1.7199 1.2951 30 1 0.7016 2.6125 6.2180 31 1 -1.0524 2.9307 7.9496 32 1 -3.3334 -0.0592 6.1817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235406069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:17 Heat of formation + Delta-G solvation = 93.240242 kcal Electronic energy + Delta-G solvation = -18317.295359 eV Core-core repulsion = 15280.747634 eV Total energy + Delta-G solvation = -3036.547725 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.70178 -42.06407 -37.63923 -36.93627 -34.99184 -34.35471 -33.30360 -32.17233 -28.41291 -27.25161 -27.06330 -25.60146 -24.43305 -23.24392 -21.57937 -19.38898 -19.15135 -18.53883 -18.28814 -17.64952 -16.59355 -16.56649 -16.00235 -15.95243 -15.48688 -14.86794 -14.67560 -14.38503 -14.04874 -13.52954 -13.27714 -13.05313 -12.82444 -12.50685 -12.27339 -12.13276 -12.11794 -12.00881 -11.74194 -11.65846 -11.09147 -10.91438 -10.56457 -10.50410 -10.43685 -8.07994 -6.22737 -0.81336 -0.13989 0.19101 1.24425 1.48879 1.50105 1.59579 1.69749 1.96942 2.47246 2.61752 2.68020 3.12150 3.22381 3.41288 3.52477 3.84447 3.95608 4.28719 4.41151 4.47020 4.50293 4.61785 4.77087 4.85107 5.03582 5.14572 5.20635 5.33165 5.61606 5.77011 5.84325 6.03674 6.28785 6.85430 6.88266 6.95706 7.46860 8.97895 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.044002 B = 0.004024 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.179061 B = 6956.363740 C = 7247.319427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.048 3.952 3 H 0.004 0.996 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.260 1.260 12 C -0.016 4.016 13 C 0.219 3.781 14 N -0.479 5.479 15 C 0.191 3.809 16 C 0.226 3.774 17 C -0.187 4.187 18 C 0.168 3.832 19 N -0.520 5.520 20 C 0.298 3.702 21 N -0.519 5.519 22 N -0.371 5.371 23 O 0.080 5.920 24 H 0.033 0.967 25 H 0.010 0.990 26 H 0.053 0.947 27 H 0.260 0.740 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.171 0.829 31 H 0.223 0.777 32 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 1.115 17.271 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.028 3.972 3 H 0.022 0.978 4 C -0.565 4.565 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.184 1.184 12 C -0.055 4.055 13 C 0.000 4.000 14 N -0.212 5.212 15 C -0.080 4.080 16 C 0.080 3.920 17 C -0.211 4.211 18 C 0.001 3.999 19 N -0.234 5.234 20 C 0.011 3.989 21 N -0.234 5.234 22 N -0.080 5.080 23 O 0.019 5.981 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.189 0.811 31 H 0.240 0.760 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.254 1.108 17.757 17.934 hybrid contribution 0.863 0.224 -1.369 1.634 sum -1.391 1.332 16.388 16.501 Atomic orbital electron populations 1.21649 0.98525 0.99183 0.98800 1.18633 0.92859 0.94913 0.90770 0.97750 1.21445 1.31512 1.12947 0.90617 0.90765 1.25780 0.95162 0.95570 1.02245 1.70055 1.37683 1.24336 1.24008 0.85522 0.79166 0.78042 0.78721 1.20444 1.21628 1.18358 1.20725 1.04039 0.97158 0.83544 1.29606 0.85369 0.88399 0.96672 1.72197 1.20335 1.22861 1.05784 1.23748 0.93773 0.93640 0.96821 1.18381 0.89769 0.93192 0.90652 1.23108 1.03998 0.98665 0.95326 1.23997 0.85901 0.94508 0.95448 1.68521 1.23658 1.06577 1.24672 1.25641 0.97079 0.92285 0.83942 1.68272 1.02145 1.26534 1.26489 1.74734 1.08022 1.20340 1.04859 1.85265 1.41713 1.41258 1.29847 0.94823 0.97081 0.92806 0.93100 0.86267 0.86922 0.81121 0.76044 0.75281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.78 71.98 0.63 -5.45 16 2 C 0.05 2.26 2.29 -11.54 -0.03 2.24 16 3 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 4 C -0.53 -26.67 8.56 25.60 0.22 -26.45 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.01 0.59 5.30 84.65 0.45 1.03 16 7 N -0.92 -52.22 11.32 21.45 0.24 -51.98 16 8 Si 0.96 41.55 29.54 68.60 2.03 43.57 16 9 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 C -0.02 -0.58 5.26 29.85 0.16 -0.43 16 13 C 0.22 8.13 6.96 88.36 0.61 8.74 16 14 N -0.48 -18.79 10.89 -302.63 -3.30 -22.08 16 15 C 0.19 6.80 7.94 137.35 1.09 7.89 16 16 C 0.23 6.78 6.80 42.03 0.29 7.07 16 17 C -0.19 -3.93 9.82 22.66 0.22 -3.71 16 18 C 0.17 2.66 11.30 84.66 0.96 3.61 16 19 N -0.52 -10.26 10.43 -200.21 -2.09 -12.34 16 20 C 0.30 6.58 12.28 180.91 2.22 8.80 16 21 N -0.52 -15.54 10.40 -189.01 -1.97 -17.51 16 22 N -0.37 -12.77 11.93 -59.26 -0.71 -13.48 16 23 O 0.08 2.85 11.29 74.58 0.84 3.69 16 24 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.01 0.49 6.84 -2.38 -0.02 0.48 16 26 H 0.05 2.96 6.07 -2.39 -0.01 2.94 16 27 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 29 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.17 2.97 7.95 -2.91 -0.02 2.94 16 31 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.23 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -65.60 288.00 3.03 -62.58 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.15 Total: 4.19 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 6.82 Total: 3.35 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -7.81 Total: -117.39 kcal Atomic # 8 Polarization: 2.85 SS G_CDS: 0.84 Total: 3.69 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -65.60 3.03 -62.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235406069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.818 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds