Wall clock time and date at job start Mon Mar 30 2020 04:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47169 * 240.00339 * 2 1 3 5 5 C 1.50696 * 109.47401 * 64.99564 * 4 2 1 6 6 H 1.08000 * 119.99883 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00175 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00452 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99887 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47045 * 89.99807 * 9 7 5 11 11 H 1.48502 * 109.47165 * 209.99780 * 9 7 5 12 12 H 1.48495 * 109.47343 * 330.00072 * 9 7 5 13 13 C 1.50694 * 109.47188 * 120.00042 * 2 1 3 14 14 N 1.30983 * 126.44081 * 240.27201 * 13 2 1 15 15 C 1.35211 * 105.57762 * 180.13323 * 14 13 2 16 16 C 1.48467 * 126.40622 * 179.88157 * 15 14 13 17 17 C 1.39409 * 120.09678 * 179.71032 * 16 15 14 18 18 N 1.32009 * 119.87692 * 179.97438 * 17 16 15 19 19 C 1.32195 * 120.08234 * 359.97438 * 18 17 16 20 20 C 1.38478 * 120.20007 * 0.26330 * 19 18 17 21 21 N 1.31986 * 120.12180 * 359.46882 * 20 19 18 22 22 N 1.30728 * 107.17575 * 359.61256 * 15 14 13 23 23 O 1.21290 * 110.10843 * 0.24918 * 22 15 14 24 24 H 1.08998 * 109.47048 * 60.00026 * 1 2 3 25 25 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47218 * 299.99992 * 1 2 3 27 27 H 1.09002 * 109.47114 * 184.99900 * 4 2 1 28 28 H 1.09005 * 109.46733 * 304.99687 * 4 2 1 29 29 H 0.96998 * 120.00543 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.06176 * 359.95267 * 17 16 15 31 31 H 1.08002 * 119.89689 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.93671 * 179.74647 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9933 -0.4016 -3.7283 8 7 1.6449 0.2772 -4.7994 9 14 2.9637 -1.9882 -3.9028 10 1 2.0246 -3.1325 -4.0201 11 1 3.8127 -1.9179 -5.1192 12 1 3.8253 -2.1755 -2.7079 13 6 2.0324 -0.7104 1.2304 14 7 2.7844 -0.1976 2.1723 15 6 2.9829 -1.1960 3.0623 16 6 3.7775 -1.1158 4.3138 17 6 3.8907 -2.2309 5.1428 18 7 4.5988 -2.1549 6.2543 19 6 5.2000 -1.0238 6.5809 20 6 5.0857 0.0874 5.7624 21 7 4.3842 0.0187 4.6465 22 7 2.3394 -2.2434 2.6173 23 8 1.7898 -1.9806 1.5685 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1264 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 1.8928 -0.0453 -5.6800 30 1 3.3997 -3.1552 4.8763 31 1 5.7782 -0.9648 7.4911 32 1 5.5753 1.0105 6.0353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235416894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:44 Heat of formation + Delta-G solvation = 111.210244 kcal Electronic energy + Delta-G solvation = -18246.546022 eV Core-core repulsion = 15210.777535 eV Total energy + Delta-G solvation = -3035.768487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.41667 -41.32853 -36.19304 -35.71550 -34.47923 -32.91516 -32.04387 -30.70160 -27.78117 -25.97463 -25.23061 -24.36876 -23.21978 -22.15436 -20.03676 -17.96347 -17.92356 -17.51751 -17.18327 -16.77157 -16.30053 -15.15453 -14.80958 -14.53594 -14.12704 -13.70200 -13.25692 -12.91157 -12.40091 -12.24893 -12.11353 -11.95313 -11.58918 -11.39715 -11.24749 -11.03456 -10.85271 -10.54693 -10.25838 -9.92950 -9.84617 -9.50152 -9.33959 -9.25953 -8.63870 -6.14341 -4.14655 0.05514 0.70155 1.41532 2.39051 2.94873 3.10672 3.26127 3.34397 3.37514 3.43838 3.66835 3.84483 4.12065 4.37006 4.39355 4.72692 4.85218 5.07064 5.13696 5.18675 5.55607 5.64031 5.68590 5.88017 6.05188 6.08491 6.39618 6.46206 6.77487 6.85462 6.97166 7.10941 7.34311 7.59842 8.22614 8.37591 8.87533 9.46305 10.98013 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.004243 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.705928 B = 6597.014460 C = 6748.301735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.008 3.992 3 H 0.115 0.885 4 C -0.008 4.008 5 C -0.521 4.521 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.219 3.781 14 N -0.465 5.465 15 C 0.202 3.798 16 C 0.161 3.839 17 C 0.086 3.914 18 N -0.434 5.434 19 C 0.056 3.944 20 C 0.058 3.942 21 N -0.401 5.401 22 N -0.374 5.374 23 O 0.089 5.911 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.022 0.978 28 H 0.025 0.975 29 H 0.265 0.735 30 H 0.178 0.822 31 H 0.177 0.823 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -2.666 19.683 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.012 4.012 3 H 0.133 0.867 4 C -0.047 4.047 5 C -0.559 4.559 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.001 4.001 14 N -0.197 5.197 15 C -0.069 4.069 16 C 0.021 3.979 17 C -0.075 4.075 18 N -0.148 5.148 19 C -0.105 4.105 20 C -0.104 4.104 21 N -0.117 5.117 22 N -0.081 5.081 23 O 0.027 5.973 24 H 0.110 0.890 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.195 0.805 31 H 0.194 0.806 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.193 -3.111 20.107 20.773 hybrid contribution 0.605 -0.741 -0.357 1.021 sum 4.798 -3.852 19.749 20.686 Atomic orbital electron populations 1.21818 0.92362 1.02713 1.02658 1.20216 0.96992 0.98985 0.85024 0.86701 1.19739 0.96739 0.96433 0.91759 1.20902 1.36577 1.09963 0.88468 0.90132 1.24930 0.95277 0.96872 0.95813 1.69880 1.46316 1.39113 0.98140 0.86868 0.80786 0.84311 0.77933 1.19960 1.21196 1.19140 1.29788 0.91487 0.81177 0.97599 1.72196 1.16900 1.28127 1.02428 1.23111 1.00352 0.86695 0.96747 1.18885 0.95951 0.91567 0.91544 1.23730 0.95071 0.98937 0.89756 1.68570 1.05373 1.25998 1.14857 1.24018 0.96570 0.89330 1.00536 1.23914 0.95902 1.00507 0.90065 1.68336 1.03723 1.24429 1.15177 1.74809 1.12110 1.22622 0.98555 1.85279 1.53629 1.30480 1.27914 0.88968 0.92261 0.93732 0.95939 0.95673 0.92487 0.80495 0.80606 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.99 37.16 0.33 -1.90 16 2 C 0.01 0.15 2.81 -91.77 -0.26 -0.11 16 3 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 4 C -0.01 -0.19 3.50 -27.88 -0.10 -0.28 16 5 C -0.52 -13.57 8.96 -34.44 -0.31 -13.88 16 6 H 0.08 2.20 7.30 -52.49 -0.38 1.82 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 9 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.22 3.97 7.00 -12.99 -0.09 3.88 16 14 N -0.46 -8.70 11.57 -9.89 -0.11 -8.81 16 15 C 0.20 3.47 7.92 -156.13 -1.24 2.23 16 16 C 0.16 2.36 6.76 -82.76 -0.56 1.80 16 17 C 0.09 1.06 10.88 -17.04 -0.19 0.88 16 18 N -0.43 -4.80 10.49 -12.78 -0.13 -4.93 16 19 C 0.06 0.46 11.22 -17.31 -0.19 0.27 16 20 C 0.06 0.53 11.22 -17.40 -0.20 0.34 16 21 N -0.40 -5.58 10.44 -9.58 -0.10 -5.68 16 22 N -0.37 -6.33 11.86 30.96 0.37 -5.97 16 23 O 0.09 1.57 11.29 18.04 0.20 1.78 16 24 H 0.09 1.60 6.95 -51.93 -0.36 1.23 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 28 H 0.03 0.54 7.57 -51.93 -0.39 0.15 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.18 1.94 7.87 -52.49 -0.41 1.53 16 31 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.18 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 288.29 15.07 4.34 4.34 Total: -1.00 -31.24 288.29 -5.42 -36.66 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -3.20 Total: -3.24 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.89 Total: -4.85 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.79 Total: -50.89 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.20 Total: 1.78 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.24 -5.42 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235416894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.873 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds