Wall clock time and date at job start Mon Mar 30 2020 04:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46844 * 2 1 4 4 C 1.53002 * 109.47169 * 240.00339 * 2 1 3 5 5 C 1.50696 * 109.47401 * 64.99564 * 4 2 1 6 6 H 1.08000 * 119.99883 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00175 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00452 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99887 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47045 * 89.99807 * 9 7 5 11 11 H 1.48502 * 109.47165 * 209.99780 * 9 7 5 12 12 H 1.48495 * 109.47343 * 330.00072 * 9 7 5 13 13 C 1.50694 * 109.47188 * 120.00042 * 2 1 3 14 14 N 1.30983 * 126.44081 * 240.27201 * 13 2 1 15 15 C 1.35211 * 105.57762 * 180.13323 * 14 13 2 16 16 C 1.48467 * 126.40622 * 179.88157 * 15 14 13 17 17 C 1.39409 * 120.09678 * 179.71032 * 16 15 14 18 18 N 1.32009 * 119.87692 * 179.97438 * 17 16 15 19 19 C 1.32195 * 120.08234 * 359.97438 * 18 17 16 20 20 C 1.38478 * 120.20007 * 0.26330 * 19 18 17 21 21 N 1.31986 * 120.12180 * 359.46882 * 20 19 18 22 22 N 1.30728 * 107.17575 * 359.61256 * 15 14 13 23 23 O 1.21290 * 110.10843 * 0.24918 * 22 15 14 24 24 H 1.08998 * 109.47048 * 60.00026 * 1 2 3 25 25 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47218 * 299.99992 * 1 2 3 27 27 H 1.09002 * 109.47114 * 184.99900 * 4 2 1 28 28 H 1.09005 * 109.46733 * 304.99687 * 4 2 1 29 29 H 0.96998 * 120.00543 * 179.97438 * 8 7 5 30 30 H 1.07998 * 120.06176 * 359.95267 * 17 16 15 31 31 H 1.08002 * 119.89689 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.93671 * 179.74647 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9933 -0.4016 -3.7283 8 7 1.6449 0.2772 -4.7994 9 14 2.9637 -1.9882 -3.9028 10 1 2.0246 -3.1325 -4.0201 11 1 3.8127 -1.9179 -5.1192 12 1 3.8253 -2.1755 -2.7079 13 6 2.0324 -0.7104 1.2304 14 7 2.7844 -0.1976 2.1723 15 6 2.9829 -1.1960 3.0623 16 6 3.7775 -1.1158 4.3138 17 6 3.8907 -2.2309 5.1428 18 7 4.5988 -2.1549 6.2543 19 6 5.2000 -1.0238 6.5809 20 6 5.0857 0.0874 5.7624 21 7 4.3842 0.0187 4.6465 22 7 2.3394 -2.2434 2.6173 23 8 1.7898 -1.9806 1.5685 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1264 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 1.8928 -0.0453 -5.6800 30 1 3.3997 -3.1552 4.8763 31 1 5.7782 -0.9648 7.4911 32 1 5.5753 1.0105 6.0353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235416894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:43 Heat of formation + Delta-G solvation = 88.210307 kcal Electronic energy + Delta-G solvation = -18247.543374 eV Core-core repulsion = 15210.777535 eV Total energy + Delta-G solvation = -3036.765840 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.74678 -42.16234 -37.69042 -37.04163 -35.39900 -34.63590 -33.43263 -31.90238 -29.54599 -26.98949 -26.41926 -25.58800 -24.49810 -23.67738 -21.47543 -19.29663 -19.17088 -18.94353 -18.33304 -17.85283 -17.39515 -16.50734 -16.05534 -15.98090 -15.43384 -15.16062 -14.70940 -14.12814 -13.94911 -13.66650 -13.32035 -13.15635 -12.96958 -12.80950 -12.66327 -12.44491 -12.30512 -12.03468 -11.87973 -11.79191 -11.37997 -11.20234 -10.74034 -10.33036 -10.29382 -8.25914 -6.29253 -0.87117 -0.12946 0.11961 1.15803 1.37372 1.40285 1.48879 1.63397 1.96646 2.37220 2.52882 2.58101 3.09096 3.09560 3.23485 3.45813 3.73072 4.01325 4.08619 4.17495 4.20616 4.35381 4.41248 4.63738 4.68669 4.94028 5.01674 5.18332 5.18649 5.31707 5.46206 5.61197 6.04980 6.27478 6.52887 6.77461 6.89170 7.34510 8.89453 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.004243 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.705928 B = 6597.014460 C = 6748.301735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.016 3.984 3 H 0.111 0.889 4 C -0.005 4.005 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.943 5.943 9 Si 0.932 3.068 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.258 1.258 13 C 0.218 3.782 14 N -0.484 5.484 15 C 0.205 3.795 16 C 0.123 3.877 17 C 0.089 3.911 18 N -0.449 5.449 19 C 0.082 3.918 20 C 0.064 3.936 21 N -0.437 5.437 22 N -0.376 5.376 23 O 0.083 5.917 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.015 0.985 28 H 0.034 0.966 29 H 0.266 0.734 30 H 0.181 0.819 31 H 0.227 0.773 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -3.416 22.439 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.004 4.004 3 H 0.129 0.871 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.757 3.243 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.182 1.182 13 C -0.002 4.002 14 N -0.216 5.216 15 C -0.067 4.067 16 C -0.015 4.015 17 C -0.071 4.071 18 N -0.163 5.163 19 C -0.080 4.080 20 C -0.099 4.099 21 N -0.153 5.153 22 N -0.085 5.085 23 O 0.023 5.977 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.198 0.802 31 H 0.243 0.757 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.482 -3.896 22.844 23.814 hybrid contribution 0.290 -0.390 -0.995 1.107 sum 5.773 -4.287 21.849 23.002 Atomic orbital electron populations 1.21763 0.90680 1.03452 1.03066 1.19988 0.98343 0.98284 0.83805 0.87058 1.19622 0.96271 0.96622 0.91814 1.21181 1.35110 1.09235 0.89945 0.92521 1.25735 0.96589 1.00152 0.95667 1.70010 1.48397 1.41200 0.98735 0.85927 0.79666 0.80722 0.77998 1.18755 1.21207 1.18214 1.29508 0.91684 0.81480 0.97498 1.72177 1.17251 1.29114 1.03102 1.23622 0.99861 0.85952 0.97239 1.18838 0.98056 0.92998 0.91647 1.23724 0.95132 0.98382 0.89859 1.68680 1.05929 1.27429 1.14299 1.24873 0.94307 0.87740 1.01105 1.24679 0.94374 1.02431 0.88429 1.68255 1.04945 1.24645 1.17471 1.74781 1.12616 1.22634 0.98469 1.85262 1.53962 1.30118 1.28322 0.90435 0.91372 0.91389 0.96707 0.94786 0.92456 0.80185 0.75677 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.99 71.98 0.65 -3.55 16 2 C 0.02 0.59 2.81 -11.54 -0.03 0.56 16 3 H 0.11 4.14 8.14 -2.38 -0.02 4.12 16 4 C 0.00 -0.22 3.50 29.85 0.10 -0.11 16 5 C -0.52 -27.31 8.96 25.60 0.23 -27.08 16 6 H 0.06 3.20 7.30 -2.91 -0.02 3.18 16 7 C 0.02 0.91 5.47 84.65 0.46 1.38 16 8 N -0.94 -56.47 13.96 21.45 0.30 -56.17 16 9 Si 0.93 42.92 27.47 68.60 1.88 44.80 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -11.41 6.54 99.48 0.65 -10.76 16 13 C 0.22 7.83 7.00 88.36 0.62 8.45 16 14 N -0.48 -18.04 11.57 -302.55 -3.50 -21.54 16 15 C 0.20 6.97 7.92 137.32 1.09 8.06 16 16 C 0.12 3.50 6.76 42.00 0.28 3.78 16 17 C 0.09 2.07 10.88 84.95 0.92 2.99 16 18 N -0.45 -8.71 10.49 -194.36 -2.04 -10.75 16 19 C 0.08 1.00 11.22 84.70 0.95 1.95 16 20 C 0.06 0.95 11.22 84.73 0.95 1.91 16 21 N -0.44 -11.48 10.44 -184.21 -1.92 -13.40 16 22 N -0.38 -12.64 11.86 -59.19 -0.70 -13.34 16 23 O 0.08 2.89 11.29 74.63 0.84 3.73 16 24 H 0.08 2.70 6.95 -2.39 -0.02 2.69 16 25 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 28 H 0.03 1.44 7.57 -2.38 -0.02 1.42 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 30 H 0.18 3.86 7.87 -2.91 -0.02 3.83 16 31 H 0.23 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.22 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -68.90 288.29 2.18 -66.72 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.09 Total: 1.61 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.23 Total: -1.67 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -7.87 Total: -115.20 kcal Atomic # 8 Polarization: 2.89 SS G_CDS: 0.84 Total: 3.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Total: -68.90 2.18 -66.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235416894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.930 kcal (2) G-P(sol) polarization free energy of solvation -68.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds