Wall clock time and date at job start Mon Mar 30 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28780 * 125.44826 * 2 1 4 4 N 1.28996 * 108.72682 * 179.72114 * 3 2 1 5 5 C 1.33319 * 107.35393 * 0.44104 * 4 3 2 6 6 C 1.50698 * 126.54991 * 179.83162 * 5 4 3 7 7 O 1.42911 * 109.46845 * 269.68415 * 6 5 4 8 8 C 1.35675 * 116.99567 * 180.02562 * 7 6 5 9 9 C 1.39314 * 119.81564 * 180.02562 * 8 7 6 10 10 C 1.36436 * 120.18679 * 180.27303 * 9 8 7 11 11 C 1.40839 * 119.80658 * 359.49986 * 10 9 8 12 12 C 1.41214 * 120.17523 * 180.22651 * 11 10 9 13 13 H 1.07998 * 120.00106 * 205.15988 * 12 11 10 14 14 C 1.39900 * 119.99897 * 25.16786 * 12 11 10 15 15 N 1.30877 * 119.99964 * 17.95935 * 14 12 11 16 16 Si 1.86804 * 119.99799 * 197.96847 * 14 12 11 17 17 H 1.48497 * 109.47499 * 94.50679 * 16 14 12 18 18 H 1.48498 * 109.46920 * 214.51003 * 16 14 12 19 19 H 1.48503 * 109.46747 * 334.50589 * 16 14 12 20 20 C 1.40833 * 119.64336 * 0.49469 * 11 10 9 21 21 C 1.36433 * 119.80947 * 359.75507 * 20 11 10 22 22 N 1.28885 * 125.45000 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.46839 * 269.99515 * 1 2 3 24 24 H 1.09000 * 109.47314 * 29.99665 * 1 2 3 25 25 H 1.09005 * 109.46916 * 149.99414 * 1 2 3 26 26 H 1.08998 * 109.47174 * 149.69227 * 6 5 4 27 27 H 1.08997 * 109.47260 * 29.67984 * 6 5 4 28 28 H 1.08005 * 119.90322 * 359.97438 * 9 8 7 29 29 H 1.07997 * 120.09477 * 179.72057 * 10 9 8 30 30 H 0.97003 * 119.99637 * 180.02562 * 15 14 12 31 31 H 1.08001 * 120.08913 * 179.73279 * 20 11 10 32 32 H 1.08003 * 119.90178 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6780 0.0059 5 6 3.4621 -0.6551 0.0000 6 6 4.6825 -1.5391 -0.0001 7 8 5.0683 -1.8185 -1.3475 8 6 6.1573 -2.6079 -1.5252 9 6 6.5855 -2.9174 -2.8143 10 6 7.6764 -3.7151 -3.0018 11 6 8.3762 -4.2173 -1.8876 12 6 9.5091 -5.0398 -2.0727 13 1 9.8006 -5.7387 -1.3028 14 6 10.2540 -4.9490 -3.2535 15 7 10.1368 -3.8959 -4.0217 16 14 11.4157 -6.3309 -3.7335 17 1 10.7186 -7.2672 -4.6514 18 1 12.6056 -5.7624 -4.4161 19 1 11.8462 -7.0614 -2.5144 20 6 7.9367 -3.8996 -0.5879 21 6 6.8410 -3.1048 -0.4178 22 7 2.2125 -1.0499 -0.0005 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5140 26 1 4.4547 -2.4731 0.5136 27 1 5.4989 -1.0315 0.5137 28 1 6.0495 -2.5286 -3.6676 29 1 8.0044 -3.9577 -4.0018 30 1 10.6530 -3.8332 -4.8406 31 1 8.4654 -4.2844 0.2717 32 1 6.5024 -2.8605 0.5783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236106425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:46 Heat of formation + Delta-G solvation = 116.099547 kcal Electronic energy + Delta-G solvation = -17949.405334 eV Core-core repulsion = 14913.848862 eV Total energy + Delta-G solvation = -3035.556471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.39361 -38.86669 -36.53704 -35.23045 -33.55002 -33.14186 -30.14118 -29.37155 -28.91859 -27.17183 -24.73284 -23.21535 -22.59802 -20.85147 -20.61682 -17.71248 -17.70241 -17.30655 -16.88408 -15.54912 -15.13982 -14.99823 -13.99521 -13.97092 -13.93128 -13.73498 -13.20399 -12.84449 -12.26249 -12.16369 -12.05125 -11.72693 -11.35245 -11.12311 -11.06439 -10.99988 -10.86013 -10.68884 -10.32004 -9.99099 -9.81318 -9.34703 -9.03878 -7.64819 -7.04999 -6.72501 -4.25992 1.11634 1.79323 2.01842 2.77092 2.95234 3.09666 3.13279 3.20971 3.62821 3.95851 4.08170 4.52371 4.54179 4.62692 4.70471 4.83872 5.34202 5.56130 5.64577 5.66903 5.72330 6.00786 6.06813 6.20848 6.69064 6.97391 7.10220 7.17699 7.43542 7.54894 7.77392 8.00490 8.19397 8.28349 8.40231 8.63512 8.89861 8.97495 10.22337 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.067305 B = 0.003402 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.919787 B = 8229.306483 C = 8330.660853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.145 5.145 3 N -0.067 5.067 4 N -0.266 5.266 5 C 0.179 3.821 6 C 0.166 3.834 7 O -0.322 6.322 8 C -0.010 4.010 9 C -0.115 4.115 10 C -0.133 4.133 11 C 0.090 3.910 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.797 5.797 16 Si 0.908 3.092 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.197 4.197 21 C -0.165 4.165 22 N -0.290 5.290 23 H 0.101 0.899 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.280 0.720 31 H 0.096 0.904 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 4.140 5.736 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.057 5.057 3 N -0.061 5.061 4 N -0.138 5.138 5 C -0.103 4.103 6 C 0.087 3.913 7 O -0.237 6.237 8 C -0.052 4.052 9 C -0.134 4.134 10 C -0.153 4.153 11 C 0.088 3.912 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.423 5.423 16 Si 0.732 3.268 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.216 4.216 21 C -0.184 4.184 22 N -0.143 5.143 23 H 0.119 0.881 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.941 4.877 5.372 16.610 hybrid contribution 0.765 -0.957 -0.070 1.227 sum -14.177 3.920 5.301 15.635 Atomic orbital electron populations 1.22414 0.69220 1.06878 1.05887 1.50068 1.10710 1.01035 1.43905 1.78962 0.96568 1.14357 1.16170 1.75867 1.09641 1.11242 1.17074 1.25268 0.92676 0.90345 1.02052 1.20301 0.88941 0.95724 0.86312 1.85841 1.45917 1.67729 1.24191 1.18516 0.90992 1.01292 0.94440 1.19812 0.98778 1.01980 0.92822 1.20950 0.94099 1.00403 0.99836 1.17608 0.92058 0.91037 0.90513 1.19488 1.08984 1.19087 1.01756 0.90453 1.25888 0.97105 0.95556 0.95666 1.69839 1.35557 1.25108 1.11805 0.86311 0.79417 0.81523 0.79516 1.19398 1.20365 1.18648 1.20566 0.99724 1.04602 0.96754 1.20408 0.99232 1.03302 0.95423 1.74728 1.03392 1.15077 1.21111 0.88103 0.86990 0.87098 0.89903 0.89474 0.88480 0.85722 0.90896 0.88548 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.49 11.63 59.85 0.70 1.18 16 2 N -0.14 -1.75 4.40 -16.69 -0.07 -1.82 16 3 N -0.07 -0.97 13.25 60.35 0.80 -0.17 16 4 N -0.27 -4.52 12.50 32.45 0.41 -4.12 16 5 C 0.18 2.97 8.00 -156.62 -1.25 1.72 16 6 C 0.17 2.82 5.35 36.00 0.19 3.01 16 7 O -0.32 -6.82 10.11 -18.73 -0.19 -7.01 16 8 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 9 C -0.11 -2.80 9.92 -39.83 -0.40 -3.20 16 10 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 11 C 0.09 2.39 5.57 -106.80 -0.59 1.80 16 12 C -0.46 -12.22 9.04 -37.83 -0.34 -12.56 16 13 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 14 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 15 N -0.80 -20.65 11.00 55.55 0.61 -20.03 16 16 Si 0.91 18.65 29.60 -169.99 -5.03 13.61 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C -0.20 -4.77 9.74 -39.25 -0.38 -5.15 16 21 C -0.16 -3.67 8.96 -39.83 -0.36 -4.02 16 22 N -0.29 -4.31 12.13 32.47 0.39 -3.92 16 23 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.26 7.64 -51.93 -0.40 0.87 16 27 H 0.09 1.38 7.65 -51.93 -0.40 0.99 16 28 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 29 H 0.13 3.32 6.21 -52.49 -0.33 3.00 16 30 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 31 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 32 H 0.10 1.80 6.27 -52.48 -0.33 1.47 16 LS Contribution 287.52 15.07 4.33 4.33 Total: -1.00 -31.65 287.52 -4.99 -36.64 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.11 Total: 2.23 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -3.12 Total: -19.74 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 2.14 Total: -30.06 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.19 Total: -7.01 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.65 -4.99 -36.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236106425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.736 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds