Wall clock time and date at job start Mon Mar 30 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28780 * 125.44826 * 2 1 4 4 N 1.28996 * 108.72682 * 179.72114 * 3 2 1 5 5 C 1.33319 * 107.35393 * 0.44104 * 4 3 2 6 6 C 1.50698 * 126.54991 * 179.83162 * 5 4 3 7 7 O 1.42911 * 109.46845 * 269.68415 * 6 5 4 8 8 C 1.35675 * 116.99567 * 180.02562 * 7 6 5 9 9 C 1.39314 * 119.81564 * 180.02562 * 8 7 6 10 10 C 1.36436 * 120.18679 * 180.27303 * 9 8 7 11 11 C 1.40839 * 119.80658 * 359.49986 * 10 9 8 12 12 C 1.41214 * 120.17523 * 180.22651 * 11 10 9 13 13 H 1.07998 * 120.00106 * 205.15988 * 12 11 10 14 14 C 1.39900 * 119.99897 * 25.16786 * 12 11 10 15 15 N 1.30877 * 119.99964 * 17.95935 * 14 12 11 16 16 Si 1.86804 * 119.99799 * 197.96847 * 14 12 11 17 17 H 1.48497 * 109.47499 * 94.50679 * 16 14 12 18 18 H 1.48498 * 109.46920 * 214.51003 * 16 14 12 19 19 H 1.48503 * 109.46747 * 334.50589 * 16 14 12 20 20 C 1.40833 * 119.64336 * 0.49469 * 11 10 9 21 21 C 1.36433 * 119.80947 * 359.75507 * 20 11 10 22 22 N 1.28885 * 125.45000 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.46839 * 269.99515 * 1 2 3 24 24 H 1.09000 * 109.47314 * 29.99665 * 1 2 3 25 25 H 1.09005 * 109.46916 * 149.99414 * 1 2 3 26 26 H 1.08998 * 109.47174 * 149.69227 * 6 5 4 27 27 H 1.08997 * 109.47260 * 29.67984 * 6 5 4 28 28 H 1.08005 * 119.90322 * 359.97438 * 9 8 7 29 29 H 1.07997 * 120.09477 * 179.72057 * 10 9 8 30 30 H 0.97003 * 119.99637 * 180.02562 * 15 14 12 31 31 H 1.08001 * 120.08913 * 179.73279 * 20 11 10 32 32 H 1.08003 * 119.90178 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6780 0.0059 5 6 3.4621 -0.6551 0.0000 6 6 4.6825 -1.5391 -0.0001 7 8 5.0683 -1.8185 -1.3475 8 6 6.1573 -2.6079 -1.5252 9 6 6.5855 -2.9174 -2.8143 10 6 7.6764 -3.7151 -3.0018 11 6 8.3762 -4.2173 -1.8876 12 6 9.5091 -5.0398 -2.0727 13 1 9.8006 -5.7387 -1.3028 14 6 10.2540 -4.9490 -3.2535 15 7 10.1368 -3.8959 -4.0217 16 14 11.4157 -6.3309 -3.7335 17 1 10.7186 -7.2672 -4.6514 18 1 12.6056 -5.7624 -4.4161 19 1 11.8462 -7.0614 -2.5144 20 6 7.9367 -3.8996 -0.5879 21 6 6.8410 -3.1048 -0.4178 22 7 2.2125 -1.0499 -0.0005 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5140 26 1 4.4547 -2.4731 0.5136 27 1 5.4989 -1.0315 0.5137 28 1 6.0495 -2.5286 -3.6676 29 1 8.0044 -3.9577 -4.0018 30 1 10.6530 -3.8332 -4.8406 31 1 8.4654 -4.2844 0.2717 32 1 6.5024 -2.8605 0.5783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236106425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:46 Heat of formation + Delta-G solvation = 95.437049 kcal Electronic energy + Delta-G solvation = -17950.301327 eV Core-core repulsion = 14913.848862 eV Total energy + Delta-G solvation = -3036.452464 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.48497 -40.58517 -38.29149 -36.24508 -35.24187 -34.45798 -31.82052 -31.00469 -30.25402 -28.36221 -26.58101 -24.27325 -23.84693 -22.65199 -22.36885 -19.27388 -19.02432 -18.56012 -18.27439 -17.11434 -16.79595 -16.49530 -15.72962 -15.32054 -15.04998 -14.72531 -14.39029 -14.09201 -14.00071 -13.80585 -13.46715 -13.21842 -12.87034 -12.78633 -12.63145 -12.39247 -12.16578 -12.11325 -11.75938 -11.61891 -11.38622 -11.12151 -10.88793 -9.54409 -8.93537 -8.58545 -6.21774 0.05573 0.73510 0.95364 1.04881 1.06277 1.41884 1.53898 1.55325 2.24597 2.38446 2.73834 3.04855 3.16289 3.71944 3.98327 4.08419 4.24034 4.30331 4.37774 4.40728 4.43126 4.54993 4.70716 4.85483 5.07984 5.12102 5.22500 5.29328 5.56729 5.65292 5.88787 6.07522 6.26963 6.55158 6.77062 6.96801 7.08087 7.16634 8.38515 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.067305 B = 0.003402 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.919787 B = 8229.306483 C = 8330.660853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.123 5.123 3 N -0.074 5.074 4 N -0.298 5.298 5 C 0.161 3.839 6 C 0.162 3.838 7 O -0.336 6.336 8 C -0.001 4.001 9 C -0.129 4.129 10 C -0.153 4.153 11 C 0.058 3.942 12 C -0.498 4.498 13 H 0.078 0.922 14 C 0.033 3.967 15 N -0.831 5.831 16 Si 0.982 3.018 17 H -0.264 1.264 18 H -0.270 1.270 19 H -0.257 1.257 20 C -0.205 4.205 21 C -0.160 4.160 22 N -0.295 5.295 23 H 0.130 0.870 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.287 0.713 31 H 0.110 0.890 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.878 3.981 6.754 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.038 5.038 3 N -0.067 5.067 4 N -0.170 5.170 5 C -0.121 4.121 6 C 0.084 3.916 7 O -0.250 6.250 8 C -0.044 4.044 9 C -0.148 4.148 10 C -0.172 4.172 11 C 0.056 3.944 12 C -0.527 4.527 13 H 0.096 0.904 14 C -0.181 4.181 15 N -0.458 5.458 16 Si 0.803 3.197 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.181 1.181 20 C -0.224 4.224 21 C -0.178 4.178 22 N -0.149 5.149 23 H 0.148 0.852 24 H 0.155 0.845 25 H 0.146 0.854 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.305 4.746 6.405 18.149 hybrid contribution 0.889 -0.782 -0.307 1.223 sum -15.416 3.963 6.098 17.046 Atomic orbital electron populations 1.23149 0.65445 1.09031 1.08496 1.50682 1.12480 0.99827 1.40835 1.78876 0.96213 1.14921 1.16674 1.75820 1.11056 1.11656 1.18447 1.25149 0.93135 0.90310 1.03528 1.20530 0.89767 0.96985 0.84310 1.85810 1.44916 1.67088 1.27224 1.18561 0.91171 1.00550 0.94150 1.19963 0.98657 1.02040 0.94178 1.20856 0.95207 1.01915 0.99248 1.17966 0.92812 0.92018 0.91632 1.19745 1.09881 1.20057 1.03057 0.90375 1.26748 0.98566 0.97683 0.95086 1.69898 1.36710 1.26778 1.12386 0.85188 0.77196 0.78072 0.79208 1.18857 1.19515 1.18085 1.20829 1.00433 1.04788 0.96391 1.20741 0.98096 1.01861 0.97117 1.74685 1.03056 1.15991 1.21193 0.85164 0.84535 0.85351 0.87911 0.88399 0.87687 0.87339 0.90235 0.87184 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 11.63 127.77 1.49 2.00 16 2 N -0.12 -2.68 4.40 -206.72 -0.91 -3.59 16 3 N -0.07 -2.02 13.25 37.02 0.49 -1.53 16 4 N -0.30 -9.86 12.50 -51.26 -0.64 -10.50 16 5 C 0.16 5.13 8.00 138.55 1.11 6.23 16 6 C 0.16 5.21 5.35 71.24 0.38 5.59 16 7 O -0.34 -13.85 10.11 -89.92 -0.91 -14.76 16 8 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 9 C -0.13 -6.41 9.92 22.11 0.22 -6.20 16 10 C -0.15 -8.22 8.64 22.49 0.19 -8.03 16 11 C 0.06 3.14 5.57 -21.28 -0.12 3.02 16 12 C -0.50 -26.81 9.04 23.40 0.21 -26.60 16 13 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 14 C 0.03 1.68 5.13 85.24 0.44 2.12 16 15 N -0.83 -44.10 11.00 21.82 0.24 -43.86 16 16 Si 0.98 38.42 29.60 68.60 2.03 40.45 16 17 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 20 C -0.20 -9.87 9.74 22.48 0.22 -9.65 16 21 C -0.16 -6.87 8.96 22.11 0.20 -6.67 16 22 N -0.30 -8.17 12.13 -51.20 -0.62 -8.80 16 23 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.13 0.49 8.14 -2.38 -0.02 0.48 16 26 H 0.10 2.87 7.64 -2.39 -0.02 2.85 16 27 H 0.10 2.91 7.65 -2.39 -0.02 2.89 16 28 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 29 H 0.11 6.07 6.21 -2.91 -0.02 6.05 16 30 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 31 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 32 H 0.14 4.67 6.27 -2.91 -0.02 4.65 16 Total: -1.00 -69.57 287.52 5.32 -64.25 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.15 Total: 16.39 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 4.49 Total: -38.06 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -1.44 Total: -68.27 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.91 Total: -14.76 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -69.57 5.32 -64.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236106425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.687 kcal (2) G-P(sol) polarization free energy of solvation -69.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds