Wall clock time and date at job start Mon Mar 30 2020 05:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47258 * 270.00149 * 3 2 1 5 5 H 1.48496 * 109.46933 * 30.00294 * 3 2 1 6 6 H 1.48506 * 109.46952 * 150.00083 * 3 2 1 7 7 C 1.37885 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99598 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46612 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99600 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99918 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.57533 * 60.25293 * 13 11 10 15 15 C 1.53433 * 109.57507 * 300.00074 * 13 11 10 16 16 N 1.46915 * 107.79701 * 176.98625 * 15 13 11 17 17 C 1.39918 * 118.92223 * 44.64737 * 16 15 13 18 18 C 1.39075 * 119.13297 * 166.71434 * 17 16 15 19 19 C 1.38025 * 120.03113 * 179.79434 * 18 17 16 20 20 C 1.38302 * 119.91193 * 359.92928 * 19 18 17 21 21 C 1.38129 * 120.16192 * 0.08664 * 20 19 18 22 22 C 1.38503 * 120.30553 * 0.02562 * 21 20 19 23 23 C 1.50593 * 118.93428 * 179.77436 * 22 21 20 24 24 H 0.97003 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46945 * 60.01028 * 9 7 2 26 26 H 1.08997 * 109.47358 * 300.00370 * 9 7 2 27 27 H 0.96998 * 120.00094 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.79609 * 57.40841 * 15 13 11 29 29 H 1.09005 * 109.79471 * 296.56057 * 15 13 11 30 30 H 0.97010 * 120.54028 * 224.67103 * 16 15 13 31 31 H 1.08003 * 119.98650 * 359.51061 * 18 17 16 32 32 H 1.08001 * 120.04612 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.92501 * 180.08870 * 20 19 18 34 34 H 1.08004 * 119.84964 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.29915 * 39.17833 * 23 22 21 36 36 H 1.09004 * 109.13421 * 279.69067 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7331 -6.0288 0.0006 14 1 3.3576 -5.9749 0.8923 15 6 3.6166 -5.9504 -1.2514 16 7 4.6010 -7.0383 -1.1751 17 6 4.1711 -8.3145 -0.7952 18 6 5.0198 -9.3996 -0.9862 19 6 4.6162 -10.6660 -0.6142 20 6 3.3675 -10.8541 -0.0502 21 6 2.5227 -9.7780 0.1401 22 6 2.9188 -8.5041 -0.2324 23 6 1.9711 -7.3540 -0.0155 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5568 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 4.1301 -4.9893 -1.2812 29 1 3.0030 -6.0697 -2.1443 30 1 5.5340 -6.8745 -1.3844 31 1 5.9933 -9.2519 -1.4299 32 1 5.2750 -11.5089 -0.7628 33 1 3.0521 -11.8448 0.2422 34 1 1.5485 -9.9307 0.5806 35 1 1.4574 -7.4851 0.9368 36 1 1.2376 -7.3386 -0.8216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236407974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:14 Heat of formation + Delta-G solvation = -23.323804 kcal Electronic energy + Delta-G solvation = -18626.392952 eV Core-core repulsion = 15688.330974 eV Total energy + Delta-G solvation = -2938.061978 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29857 -38.73939 -36.07543 -34.30537 -33.22939 -32.39150 -30.57206 -29.50153 -27.31023 -24.86107 -23.98324 -22.53017 -22.28402 -20.25826 -19.18766 -17.63238 -17.09618 -16.19434 -15.99542 -15.19192 -15.05206 -14.90586 -14.20994 -14.07031 -13.89782 -13.56929 -13.31220 -13.05359 -12.84684 -12.60457 -12.01292 -11.76911 -11.57073 -11.18807 -11.03346 -10.92624 -10.88206 -10.73632 -10.34996 -10.10223 -9.43331 -9.07720 -8.77439 -8.69328 -7.93655 -7.42816 -6.19747 -4.27003 1.39933 1.59621 3.19733 3.21820 3.28106 3.30308 3.44653 3.83647 4.02429 4.33437 4.67638 4.85595 4.95358 5.01256 5.12629 5.16538 5.26004 5.42835 5.47406 5.49542 5.58892 5.72927 5.89102 6.01189 6.11762 6.27054 6.28084 6.52441 6.63398 6.81248 7.25703 7.28317 7.37709 7.48006 7.62051 7.69120 7.93482 8.56572 8.73583 9.03520 9.39709 10.90404 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.047513 B = 0.003754 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.170985 B = 7457.679835 C = 7947.158780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.711 5.711 11 C 0.505 3.495 12 O -0.551 6.551 13 C -0.125 4.125 14 H 0.098 0.902 15 C 0.134 3.866 16 N -0.750 5.750 17 C 0.214 3.786 18 C -0.192 4.192 19 C -0.084 4.084 20 C -0.175 4.175 21 C -0.076 4.076 22 C -0.146 4.146 23 C -0.053 4.053 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.390 0.610 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.402 0.598 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.849 -17.142 -1.507 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.288 3.712 12 O -0.430 6.430 13 C -0.147 4.147 14 H 0.116 0.884 15 C 0.008 3.992 16 N -0.381 5.381 17 C 0.112 3.888 18 C -0.215 4.215 19 C -0.103 4.103 20 C -0.195 4.195 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.090 4.090 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.222 0.778 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.237 0.763 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.656 -16.981 -1.514 19.593 hybrid contribution 1.273 1.131 -0.043 1.703 sum 10.930 -15.850 -1.557 19.316 Atomic orbital electron populations 1.69972 1.06115 1.27347 1.48776 1.24955 0.94914 0.99465 0.94665 0.86417 0.79625 0.82651 0.78230 1.20445 1.20983 1.19749 1.21216 0.93230 0.90455 1.53366 0.91923 1.19126 0.88316 0.81941 0.97811 1.46496 1.11080 1.06150 1.72153 1.20206 0.89159 0.84168 0.77638 1.90665 1.16746 1.84799 1.50750 1.21656 0.97617 0.95078 1.00393 0.88358 1.21497 0.90839 0.90196 0.96632 1.44672 1.10294 1.06335 1.76799 1.17610 0.92993 0.85199 0.93026 1.20635 1.00627 0.92035 1.08172 1.20819 0.96042 0.96127 0.97330 1.20834 0.95197 0.98601 1.04901 1.20892 0.99152 0.91501 0.97937 1.19440 0.95312 0.95606 1.04697 1.20102 0.95942 0.89260 1.03714 0.92407 0.95442 0.95496 0.77771 0.89495 0.91586 0.76297 0.86469 0.86486 0.86626 0.86148 0.90119 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.51 9.28 -34.44 -0.32 -14.83 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.71 -14.42 5.43 -61.47 -0.33 -14.75 16 11 C 0.50 9.76 7.16 -10.99 -0.08 9.68 16 12 O -0.55 -12.96 15.85 5.56 0.09 -12.87 16 13 C -0.12 -1.80 2.70 -91.62 -0.25 -2.05 16 14 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.13 1.63 6.31 -3.59 -0.02 1.61 16 16 N -0.75 -8.10 5.80 -58.09 -0.34 -8.43 16 17 C 0.21 2.61 6.47 -83.72 -0.54 2.07 16 18 C -0.19 -2.06 9.88 -39.35 -0.39 -2.44 16 19 C -0.08 -0.85 10.05 -39.64 -0.40 -1.25 16 20 C -0.18 -1.85 10.04 -39.60 -0.40 -2.24 16 21 C -0.08 -0.90 9.66 -39.52 -0.38 -1.28 16 22 C -0.15 -1.91 5.76 -104.44 -0.60 -2.51 16 23 C -0.05 -0.76 4.50 -28.00 -0.13 -0.88 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 6.70 7.73 -40.82 -0.32 6.39 16 28 H 0.09 0.93 7.53 -51.93 -0.39 0.54 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.40 3.38 8.86 -40.82 -0.36 3.02 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.08 1.17 8.12 -51.93 -0.42 0.74 16 36 H 0.08 1.30 7.81 -51.93 -0.41 0.89 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -31.66 304.68 -8.72 -40.37 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.81 Total: 6.67 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.63 Total: -6.04 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.07 Total: -48.28 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.66 -8.72 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236407974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.050 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds