Wall clock time and date at job start Mon Mar 30 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47258 * 270.00149 * 3 2 1 5 5 H 1.48496 * 109.46933 * 30.00294 * 3 2 1 6 6 H 1.48506 * 109.46952 * 150.00083 * 3 2 1 7 7 C 1.37885 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99598 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46612 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99600 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00309 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99918 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.57533 * 60.25293 * 13 11 10 15 15 C 1.53433 * 109.57507 * 300.00074 * 13 11 10 16 16 N 1.46915 * 107.79701 * 176.98625 * 15 13 11 17 17 C 1.39918 * 118.92223 * 44.64737 * 16 15 13 18 18 C 1.39075 * 119.13297 * 166.71434 * 17 16 15 19 19 C 1.38025 * 120.03113 * 179.79434 * 18 17 16 20 20 C 1.38302 * 119.91193 * 359.92928 * 19 18 17 21 21 C 1.38129 * 120.16192 * 0.08664 * 20 19 18 22 22 C 1.38503 * 120.30553 * 0.02562 * 21 20 19 23 23 C 1.50593 * 118.93428 * 179.77436 * 22 21 20 24 24 H 0.97003 * 120.00023 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46945 * 60.01028 * 9 7 2 26 26 H 1.08997 * 109.47358 * 300.00370 * 9 7 2 27 27 H 0.96998 * 120.00094 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.79609 * 57.40841 * 15 13 11 29 29 H 1.09005 * 109.79471 * 296.56057 * 15 13 11 30 30 H 0.97010 * 120.54028 * 224.67103 * 16 15 13 31 31 H 1.08003 * 119.98650 * 359.51061 * 18 17 16 32 32 H 1.08001 * 120.04612 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.92501 * 180.08870 * 20 19 18 34 34 H 1.08004 * 119.84964 * 179.97438 * 21 20 19 35 35 H 1.09000 * 109.29915 * 39.17833 * 23 22 21 36 36 H 1.09004 * 109.13421 * 279.69067 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7331 -6.0288 0.0006 14 1 3.3576 -5.9749 0.8923 15 6 3.6166 -5.9504 -1.2514 16 7 4.6010 -7.0383 -1.1751 17 6 4.1711 -8.3145 -0.7952 18 6 5.0198 -9.3996 -0.9862 19 6 4.6162 -10.6660 -0.6142 20 6 3.3675 -10.8541 -0.0502 21 6 2.5227 -9.7780 0.1401 22 6 2.9188 -8.5041 -0.2324 23 6 1.9711 -7.3540 -0.0155 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5568 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 4.1301 -4.9893 -1.2812 29 1 3.0030 -6.0697 -2.1443 30 1 5.5340 -6.8745 -1.3844 31 1 5.9933 -9.2519 -1.4299 32 1 5.2750 -11.5089 -0.7628 33 1 3.0521 -11.8448 0.2422 34 1 1.5485 -9.9307 0.5806 35 1 1.4574 -7.4851 0.9368 36 1 1.2376 -7.3386 -0.8216 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236407974.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:13 Heat of formation + Delta-G solvation = -45.035174 kcal Electronic energy + Delta-G solvation = -18627.334428 eV Core-core repulsion = 15688.330974 eV Total energy + Delta-G solvation = -2939.003454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.44753 -40.13128 -37.09365 -36.21337 -34.39342 -34.25391 -31.64981 -30.40689 -29.22908 -26.02039 -25.31751 -24.02957 -23.34605 -21.66248 -20.51295 -19.02289 -18.29184 -17.66187 -17.34069 -16.77879 -16.42187 -16.17176 -15.80852 -15.30445 -14.91341 -14.71647 -14.47053 -14.36427 -14.02354 -14.00127 -13.69819 -13.58203 -12.92511 -12.71910 -12.51325 -12.27279 -12.22059 -11.86179 -11.72874 -11.48236 -11.08194 -10.80844 -10.70155 -9.86584 -9.57681 -8.30522 -8.29244 -6.45877 0.53971 0.74240 1.43651 1.45799 1.56967 1.66170 2.27230 2.43828 2.63304 2.98682 3.05931 3.57988 3.74488 3.87341 4.07645 4.17579 4.24814 4.38415 4.49037 4.60744 4.67326 4.73718 4.86461 5.01430 5.07823 5.12447 5.23155 5.23999 5.42108 5.46862 5.66558 5.68597 5.79115 5.84090 5.97285 6.39178 6.64677 6.85524 6.94525 7.22794 7.43784 8.82913 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.047513 B = 0.003754 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.170985 B = 7457.679835 C = 7947.158780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.702 5.702 11 C 0.505 3.495 12 O -0.597 6.597 13 C -0.109 4.109 14 H 0.116 0.884 15 C 0.140 3.860 16 N -0.740 5.740 17 C 0.200 3.800 18 C -0.193 4.193 19 C -0.083 4.083 20 C -0.179 4.179 21 C -0.089 4.089 22 C -0.170 4.170 23 C -0.048 4.048 24 H 0.268 0.732 25 H -0.010 1.010 26 H -0.013 1.013 27 H 0.409 0.591 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.417 0.583 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.070 0.930 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.286 -17.779 -1.745 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.142 3.858 10 N -0.352 5.352 11 C 0.291 3.709 12 O -0.479 6.479 13 C -0.131 4.131 14 H 0.134 0.866 15 C 0.014 3.986 16 N -0.373 5.373 17 C 0.097 3.903 18 C -0.215 4.215 19 C -0.102 4.102 20 C -0.199 4.199 21 C -0.107 4.107 22 C -0.174 4.174 23 C -0.086 4.086 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.005 0.995 27 H 0.245 0.755 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.254 0.746 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.089 0.911 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.163 -17.652 -1.756 22.090 hybrid contribution 0.159 1.191 0.036 1.203 sum 13.322 -16.461 -1.720 21.246 Atomic orbital electron populations 1.70137 1.08305 1.28561 1.49986 1.26066 0.95750 1.03917 0.93882 0.85162 0.78506 0.76982 0.78600 1.19565 1.21148 1.17840 1.21618 0.94356 0.90475 1.52846 0.89640 1.18574 0.88723 0.84300 0.94197 1.46193 1.11216 1.05356 1.72391 1.21079 0.89393 0.84765 0.75646 1.90643 1.19317 1.85476 1.52446 1.21558 0.96622 0.92413 1.02542 0.86624 1.21385 0.90906 0.91775 0.94569 1.44516 1.10633 1.05445 1.76724 1.17804 0.92975 0.86157 0.93329 1.20943 1.01268 0.91695 1.07587 1.21227 0.96086 0.96903 0.95949 1.21141 0.95262 0.99087 1.04364 1.21073 0.99848 0.91628 0.98191 1.19390 0.95841 0.95395 1.06818 1.19985 0.96026 0.90172 1.02396 0.92269 0.99245 0.99505 0.75526 0.87443 0.92821 0.74557 0.84133 0.83612 0.84542 0.85785 0.91104 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.98 41.71 29.54 68.60 2.03 43.73 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.56 -29.64 9.28 25.60 0.24 -29.41 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 9 C 0.26 14.35 5.43 85.63 0.46 14.82 16 10 N -0.70 -28.87 5.43 -466.78 -2.54 -31.41 16 11 C 0.50 20.09 7.16 87.66 0.63 20.72 16 12 O -0.60 -29.72 15.85 -3.03 -0.05 -29.77 16 13 C -0.11 -3.12 2.70 -11.44 -0.03 -3.15 16 14 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 15 C 0.14 3.21 6.31 86.45 0.55 3.75 16 16 N -0.74 -14.23 5.80 -337.69 -1.96 -16.19 16 17 C 0.20 4.47 6.47 38.14 0.25 4.72 16 18 C -0.19 -3.51 9.88 22.42 0.22 -3.29 16 19 C -0.08 -1.40 10.05 22.23 0.22 -1.18 16 20 C -0.18 -3.35 10.04 22.26 0.22 -3.13 16 21 C -0.09 -2.02 9.66 22.31 0.22 -1.81 16 22 C -0.17 -4.35 5.76 -19.75 -0.11 -4.46 16 23 C -0.05 -1.42 4.50 29.77 0.13 -1.29 16 24 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 26 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 27 H 0.41 13.57 7.73 -92.71 -0.72 12.85 16 28 H 0.11 2.03 7.53 -2.39 -0.02 2.02 16 29 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.42 5.65 8.86 -92.70 -0.82 4.83 16 31 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 36 H 0.06 2.02 7.81 -2.39 -0.02 2.00 16 Total: -1.00 -71.18 304.68 0.79 -70.40 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.44 Total: 21.86 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 3.46 Total: -3.05 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -4.21 Total: -103.17 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -71.18 0.79 -70.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236407974.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.360 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds