Wall clock time and date at job start Mon Mar 30 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.57260 * 299.74307 * 13 11 10 15 15 C 1.53428 * 109.57470 * 60.00083 * 13 11 10 16 16 N 1.46921 * 107.80382 * 183.00456 * 15 13 11 17 17 C 1.39926 * 118.92249 * 315.36979 * 16 15 13 18 18 C 1.39075 * 119.13909 * 193.43503 * 17 16 15 19 19 C 1.38019 * 120.03489 * 180.19415 * 18 17 16 20 20 C 1.38310 * 119.91046 * 359.95482 * 19 18 17 21 21 C 1.38121 * 120.16223 * 359.97216 * 20 19 18 22 22 C 1.38506 * 120.30290 * 359.97214 * 21 20 19 23 23 C 1.50595 * 118.92944 * 180.34503 * 22 21 20 24 24 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.79376 * 302.57517 * 15 13 11 29 29 H 1.09000 * 109.79867 * 63.36323 * 15 13 11 30 30 H 0.96998 * 120.54316 * 135.39443 * 16 15 13 31 31 H 1.08008 * 119.98430 * 0.18480 * 18 17 16 32 32 H 1.07998 * 120.04858 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.92090 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.85262 * 180.02562 * 21 20 19 35 35 H 1.09006 * 109.28138 * 80.16497 * 23 22 21 36 36 H 1.09003 * 109.31432 * 320.79191 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 5.3251 -2.8213 0.0095 12 8 6.1132 -1.8994 0.0051 13 6 5.8275 -4.2421 0.0162 14 1 5.4689 -4.7520 0.9104 15 6 5.3176 -4.9736 -1.2323 16 7 5.7678 -6.3697 -1.1502 17 6 7.0881 -6.6337 -0.7694 18 6 7.6047 -7.9111 -0.9578 19 6 8.9034 -8.1930 -0.5851 20 6 9.6904 -7.2031 -0.0249 21 6 9.1801 -5.9333 0.1619 22 6 7.8782 -5.6416 -0.2104 23 6 7.3560 -4.2449 0.0001 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6845 -0.8913 26 1 3.8746 -0.6756 0.8886 27 1 3.3697 -3.3124 0.0113 28 1 4.2285 -4.9382 -1.2618 29 1 5.7263 -4.5050 -2.1275 30 1 5.1598 -7.0967 -1.3571 31 1 6.9893 -8.6831 -1.3959 32 1 9.3050 -9.1847 -0.7317 33 1 10.7066 -7.4236 0.2672 34 1 9.7991 -5.1641 0.5994 35 1 7.7090 -3.6032 -0.8072 36 1 7.7271 -3.8606 0.9502 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236408086.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:16 Heat of formation + Delta-G solvation = -19.598749 kcal Electronic energy + Delta-G solvation = -18675.204211 eV Core-core repulsion = 15737.303763 eV Total energy + Delta-G solvation = -2937.900448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36378 -38.87074 -36.13580 -34.43792 -33.28828 -32.42107 -30.67826 -29.54632 -27.92391 -24.91462 -23.99466 -22.54174 -21.96410 -20.35897 -19.31518 -17.69282 -17.21679 -16.35011 -16.17911 -15.29555 -15.13410 -14.97179 -14.21732 -14.10847 -13.87252 -13.62531 -13.41170 -13.10342 -12.95165 -12.76037 -12.35393 -12.07456 -11.63063 -11.24960 -11.09910 -10.93697 -10.82171 -10.75986 -10.15066 -10.00240 -9.53688 -9.24826 -8.81867 -8.73327 -8.21785 -7.46270 -6.25069 -4.27772 1.36605 1.56407 3.06979 3.24338 3.31113 3.37855 3.39514 3.79327 3.91726 4.30293 4.61813 4.79946 4.91115 4.95330 5.07455 5.10463 5.20455 5.38508 5.41511 5.44014 5.54565 5.67075 5.82467 5.97399 6.05429 6.21372 6.23659 6.48950 6.59783 6.75295 6.78978 7.02530 7.15034 7.24457 7.34299 7.66093 8.07572 8.45013 8.70122 8.85222 9.34857 10.86822 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.048164 B = 0.003935 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.203179 B = 7114.211855 C = 7591.766635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.219 3.781 10 N -0.704 5.704 11 C 0.507 3.493 12 O -0.553 6.553 13 C -0.124 4.124 14 H 0.101 0.899 15 C 0.133 3.867 16 N -0.749 5.749 17 C 0.214 3.786 18 C -0.192 4.192 19 C -0.084 4.084 20 C -0.175 4.175 21 C -0.076 4.076 22 C -0.147 4.147 23 C -0.053 4.053 24 H 0.268 0.732 25 H 0.022 0.978 26 H 0.026 0.974 27 H 0.396 0.604 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.403 0.597 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.347 -15.531 -1.432 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.097 3.903 10 N -0.352 5.352 11 C 0.291 3.709 12 O -0.432 6.432 13 C -0.147 4.147 14 H 0.119 0.881 15 C 0.008 3.992 16 N -0.381 5.381 17 C 0.112 3.888 18 C -0.214 4.214 19 C -0.103 4.103 20 C -0.195 4.195 21 C -0.095 4.095 22 C -0.151 4.151 23 C -0.090 4.090 24 H 0.078 0.922 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.230 0.770 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.238 0.762 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.652 -14.514 -1.443 20.674 hybrid contribution -0.327 0.227 -0.049 0.401 sum 14.324 -14.288 -1.492 20.287 Atomic orbital electron populations 1.69876 1.06224 1.27480 1.49334 1.24796 0.94791 0.99200 0.93818 0.86817 0.80580 0.83219 0.79076 1.19821 1.20876 1.18492 1.21080 0.88489 0.95220 1.53461 0.90272 1.19515 0.95280 0.78637 0.96862 1.46217 1.05640 1.11090 1.72235 1.20268 0.83188 0.90171 0.77284 1.90656 1.55549 1.46118 1.50872 1.21640 0.97782 0.94583 1.00674 0.88134 1.21497 0.99789 0.81437 0.96498 1.44663 1.09581 1.07030 1.76783 1.17611 0.84988 0.93211 0.93001 1.20645 0.96905 0.95732 1.08119 1.20827 0.93423 0.98763 0.97243 1.20836 1.00136 0.93636 1.04920 1.20881 0.94061 0.96589 0.97944 1.19408 0.95125 0.95685 1.04906 1.20094 0.92554 0.92627 1.03734 0.92222 0.96057 0.95652 0.77043 0.89360 0.91569 0.76200 0.86415 0.86449 0.86612 0.86176 0.89908 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 7 C -0.54 -14.66 9.83 -34.44 -0.34 -15.00 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 C 0.22 5.27 4.50 -5.19 -0.02 5.25 16 10 N -0.70 -13.67 5.43 -61.47 -0.33 -14.00 16 11 C 0.51 9.28 7.16 -10.98 -0.08 9.21 16 12 O -0.55 -12.21 15.84 5.56 0.09 -12.12 16 13 C -0.12 -1.72 2.70 -91.62 -0.25 -1.96 16 14 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 15 C 0.13 1.57 6.31 -3.59 -0.02 1.54 16 16 N -0.75 -7.88 5.80 -58.09 -0.34 -8.22 16 17 C 0.21 2.54 6.48 -83.72 -0.54 2.00 16 18 C -0.19 -2.00 9.88 -39.35 -0.39 -2.39 16 19 C -0.08 -0.82 10.05 -39.64 -0.40 -1.22 16 20 C -0.18 -1.79 10.04 -39.60 -0.40 -2.19 16 21 C -0.08 -0.87 9.66 -39.53 -0.38 -1.25 16 22 C -0.15 -1.85 5.76 -104.44 -0.60 -2.45 16 23 C -0.05 -0.72 4.50 -28.01 -0.13 -0.85 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.54 7.58 -51.93 -0.39 0.14 16 26 H 0.03 0.65 7.18 -51.93 -0.37 0.28 16 27 H 0.40 6.70 7.73 -40.82 -0.32 6.38 16 28 H 0.09 0.92 7.53 -51.93 -0.39 0.53 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.40 3.32 8.86 -40.82 -0.36 2.96 16 31 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.08 1.23 7.81 -51.93 -0.41 0.82 16 36 H 0.08 1.11 8.12 -51.93 -0.42 0.68 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -31.64 301.07 -8.36 -40.01 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.78 Total: 5.92 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.64 Total: -7.24 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.10 Total: -47.64 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.64 -8.36 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236408086.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.407 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds