Wall clock time and date at job start Mon Mar 30 2020 05:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.57260 * 299.74307 * 13 11 10 15 15 C 1.53428 * 109.57470 * 60.00083 * 13 11 10 16 16 N 1.46921 * 107.80382 * 183.00456 * 15 13 11 17 17 C 1.39926 * 118.92249 * 315.36979 * 16 15 13 18 18 C 1.39075 * 119.13909 * 193.43503 * 17 16 15 19 19 C 1.38019 * 120.03489 * 180.19415 * 18 17 16 20 20 C 1.38310 * 119.91046 * 359.95482 * 19 18 17 21 21 C 1.38121 * 120.16223 * 359.97216 * 20 19 18 22 22 C 1.38506 * 120.30290 * 359.97214 * 21 20 19 23 23 C 1.50595 * 118.92944 * 180.34503 * 22 21 20 24 24 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.79376 * 302.57517 * 15 13 11 29 29 H 1.09000 * 109.79867 * 63.36323 * 15 13 11 30 30 H 0.96998 * 120.54316 * 135.39443 * 16 15 13 31 31 H 1.08008 * 119.98430 * 0.18480 * 18 17 16 32 32 H 1.07998 * 120.04858 * 180.02562 * 19 18 17 33 33 H 1.08004 * 119.92090 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.85262 * 180.02562 * 21 20 19 35 35 H 1.09006 * 109.28138 * 80.16497 * 23 22 21 36 36 H 1.09003 * 109.31432 * 320.79191 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 5.3251 -2.8213 0.0095 12 8 6.1132 -1.8994 0.0051 13 6 5.8275 -4.2421 0.0162 14 1 5.4689 -4.7520 0.9104 15 6 5.3176 -4.9736 -1.2323 16 7 5.7678 -6.3697 -1.1502 17 6 7.0881 -6.6337 -0.7694 18 6 7.6047 -7.9111 -0.9578 19 6 8.9034 -8.1930 -0.5851 20 6 9.6904 -7.2031 -0.0249 21 6 9.1801 -5.9333 0.1619 22 6 7.8782 -5.6416 -0.2104 23 6 7.3560 -4.2449 0.0001 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6845 -0.8913 26 1 3.8746 -0.6756 0.8886 27 1 3.3697 -3.3124 0.0113 28 1 4.2285 -4.9382 -1.2618 29 1 5.7263 -4.5050 -2.1275 30 1 5.1598 -7.0967 -1.3571 31 1 6.9893 -8.6831 -1.3959 32 1 9.3050 -9.1847 -0.7317 33 1 10.7066 -7.4236 0.2672 34 1 9.7991 -5.1641 0.5994 35 1 7.7090 -3.6032 -0.8072 36 1 7.7271 -3.8606 0.9502 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236408086.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:16 Heat of formation + Delta-G solvation = -41.252679 kcal Electronic energy + Delta-G solvation = -18676.143196 eV Core-core repulsion = 15737.303763 eV Total energy + Delta-G solvation = -2938.839432 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46592 -40.16127 -37.10224 -36.23820 -34.43913 -34.26988 -31.74187 -30.42172 -29.73516 -25.97261 -25.21173 -23.72277 -23.33536 -21.72703 -20.53942 -19.17744 -18.37333 -17.82995 -17.35267 -16.76320 -16.44651 -16.18825 -15.78468 -15.34509 -14.90526 -14.77436 -14.63964 -14.44170 -14.21283 -14.09592 -13.71255 -13.64505 -13.06476 -12.71552 -12.51363 -12.25877 -11.94861 -11.86659 -11.72934 -11.64406 -11.10080 -10.92428 -10.74160 -9.97180 -9.57587 -8.40450 -8.30723 -6.47410 0.54038 0.74221 1.32373 1.35189 1.47090 1.61944 2.27069 2.30759 2.58849 2.95152 2.98615 3.57759 3.72222 3.86431 4.07616 4.17508 4.23861 4.37791 4.48974 4.61049 4.67168 4.73720 4.77018 4.89000 5.00474 5.03628 5.08145 5.23143 5.25617 5.42124 5.47891 5.68386 5.79040 5.97440 6.07112 6.39476 6.53357 6.78752 6.92904 7.14378 7.34801 8.74153 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.048164 B = 0.003935 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.203179 B = 7114.211855 C = 7591.766635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.230 3.770 10 N -0.701 5.701 11 C 0.510 3.490 12 O -0.591 6.591 13 C -0.111 4.111 14 H 0.115 0.885 15 C 0.138 3.862 16 N -0.742 5.742 17 C 0.199 3.801 18 C -0.194 4.194 19 C -0.084 4.084 20 C -0.179 4.179 21 C -0.088 4.088 22 C -0.169 4.169 23 C -0.047 4.047 24 H 0.272 0.728 25 H 0.014 0.986 26 H 0.012 0.988 27 H 0.409 0.591 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.416 0.584 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.499 -17.136 -1.644 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.106 3.894 10 N -0.350 5.350 11 C 0.296 3.704 12 O -0.472 6.472 13 C -0.133 4.133 14 H 0.133 0.867 15 C 0.012 3.988 16 N -0.374 5.374 17 C 0.097 3.903 18 C -0.216 4.216 19 C -0.102 4.102 20 C -0.199 4.199 21 C -0.106 4.106 22 C -0.174 4.174 23 C -0.085 4.085 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.245 0.755 28 H 0.122 0.878 29 H 0.075 0.925 30 H 0.253 0.747 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.799 -16.170 -1.660 22.668 hybrid contribution -0.639 0.622 0.024 0.892 sum 15.159 -15.549 -1.636 21.777 Atomic orbital electron populations 1.69974 1.07668 1.28606 1.50714 1.25580 0.95510 1.02619 0.93625 0.85884 0.79257 0.79454 0.79461 1.18958 1.19928 1.18509 1.21284 0.89883 0.94618 1.52566 0.92059 1.19128 0.93419 0.81046 0.95778 1.46036 1.06591 1.09771 1.72617 1.20983 0.82147 0.91736 0.75512 1.90636 1.56343 1.47907 1.52320 1.21559 0.97858 0.91428 1.02457 0.86735 1.21397 1.00560 0.82023 0.94800 1.44535 1.09512 1.06654 1.76743 1.17812 0.85376 0.93759 0.93367 1.20941 0.97496 0.95523 1.07669 1.21220 0.93125 0.99886 0.96001 1.21146 1.01231 0.93137 1.04383 1.21076 0.93849 0.97591 0.98122 1.19392 0.96099 0.95105 1.06775 1.19987 0.92325 0.93526 1.02671 0.91854 0.96848 0.96993 0.75486 0.87792 0.92528 0.74678 0.84329 0.83735 0.84551 0.85590 0.91787 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.96 21.45 0.30 -54.71 16 2 C 0.03 1.51 5.47 84.65 0.46 1.97 16 3 Si 0.94 43.66 27.47 68.60 1.88 45.54 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.26 -12.09 6.53 99.48 0.65 -11.44 16 7 C -0.55 -29.54 9.83 25.60 0.25 -29.29 16 8 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 9 C 0.23 11.06 4.50 85.64 0.39 11.45 16 10 N -0.70 -26.98 5.43 -466.78 -2.54 -29.52 16 11 C 0.51 18.57 7.16 87.66 0.63 19.20 16 12 O -0.59 -26.35 15.84 -3.03 -0.05 -26.40 16 13 C -0.11 -2.97 2.70 -11.44 -0.03 -3.00 16 14 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 15 C 0.14 3.06 6.31 86.44 0.55 3.61 16 16 N -0.74 -14.08 5.80 -337.69 -1.96 -16.04 16 17 C 0.20 4.35 6.48 38.14 0.25 4.59 16 18 C -0.19 -3.50 9.88 22.42 0.22 -3.28 16 19 C -0.08 -1.38 10.05 22.23 0.22 -1.16 16 20 C -0.18 -3.23 10.04 22.26 0.22 -3.01 16 21 C -0.09 -1.89 9.66 22.31 0.22 -1.68 16 22 C -0.17 -4.12 5.76 -19.75 -0.11 -4.23 16 23 C -0.05 -1.30 4.50 29.77 0.13 -1.17 16 24 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.01 0.68 7.58 -2.39 -0.02 0.66 16 26 H 0.01 0.62 7.18 -2.39 -0.02 0.60 16 27 H 0.41 13.53 7.73 -92.70 -0.72 12.82 16 28 H 0.10 1.98 7.53 -2.39 -0.02 1.96 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.42 5.77 8.86 -92.71 -0.82 4.95 16 31 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.06 1.96 7.81 -2.38 -0.02 1.94 16 36 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 Total: -1.00 -67.58 301.07 0.54 -67.04 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.49 Total: 20.08 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 3.39 Total: -5.99 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.20 Total: -100.27 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -67.58 0.54 -67.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236408086.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.787 kcal (2) G-P(sol) polarization free energy of solvation -67.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds