Wall clock time and date at job start Mon Mar 30 2020 04:23:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09002 * 110.33917 * 2 1
4 4 C 1.50127 * 110.47180 * 237.66822 * 2 1 3
5 5 H 1.09002 * 110.06888 * 160.79225 * 4 2 1
6 6 C 1.50757 * 126.00334 * 24.57593 * 4 2 1
7 7 N 1.50187 * 101.72386 * 204.69659 * 6 4 2
8 8 C 1.49714 * 107.64143 * 25.71321 * 7 6 4
9 9 C 1.50126 * 104.73091 * 7.47522 * 8 7 6
10 10 H 1.08998 * 110.05530 * 79.73180 * 9 8 7
11 11 C 1.50727 * 126.57636 * 216.24986 * 9 8 7
12 12 N 1.49299 * 110.37622 * 122.26529 * 2 1 3
13 13 S 1.65597 * 126.10967 * 291.50620 * 12 2 1
14 14 O 1.42102 * 106.40224 * 203.54072 * 13 12 2
15 15 O 1.42096 * 106.40437 * 336.46337 * 13 12 2
16 16 C 1.76206 * 107.21618 * 90.00277 * 13 12 2
17 17 H 1.07996 * 120.00024 * 359.97438 * 16 13 12
18 18 C 1.37881 * 119.99776 * 179.97438 * 16 13 12
19 19 N 1.31512 * 120.00164 * 0.02562 * 18 16 13
20 20 Si 1.86796 * 119.99733 * 179.97438 * 18 16 13
21 21 H 1.48500 * 109.47045 * 60.00109 * 20 18 16
22 22 H 1.48501 * 109.47012 * 180.02562 * 20 18 16
23 23 H 1.48499 * 109.47121 * 300.00212 * 20 18 16
24 24 H 1.09001 * 109.47237 * 300.70480 * 1 2 3
25 25 H 1.09006 * 109.47052 * 60.69816 * 1 2 3
26 26 H 1.08999 * 109.47307 * 180.70224 * 1 2 3
27 27 H 1.09000 * 110.70786 * 86.83093 * 6 4 2
28 28 H 1.08991 * 111.41353 * 322.87520 * 6 4 2
29 29 H 1.00904 * 110.99839 * 264.05929 * 7 6 4
30 30 H 1.08998 * 110.38640 * 248.66759 * 8 7 6
31 31 H 1.08997 * 110.48152 * 126.33863 * 8 7 6
32 32 H 1.09004 * 110.86331 * 36.08208 * 11 9 8
33 33 H 1.09003 * 110.86251 * 272.42952 * 11 9 8
34 34 H 0.97004 * 120.00199 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9088 1.0221 0.0000
4 6 2.0550 -0.7522 -1.1884
5 1 3.0916 -0.4741 -1.3789
6 6 1.3259 -0.9751 -2.4890
7 7 1.9860 -2.2241 -2.9988
8 6 2.5158 -2.9727 -1.8154
9 6 1.9850 -2.2288 -0.6243
10 1 0.9479 -2.5091 -0.4403
11 6 2.6988 -2.0010 0.6836
12 7 2.0498 -0.7471 1.1835
13 16 1.9298 -0.2742 2.7659
14 8 2.9803 -0.9312 3.4618
15 8 1.7709 1.1378 2.7518
16 6 0.4241 -0.9381 3.3959
17 1 -0.2142 -1.5301 2.7569
18 6 0.0609 -0.7019 4.7049
19 7 0.8380 0.0194 5.4830
20 14 -1.5356 -1.4051 5.3726
21 1 -1.5050 -2.8863 5.2705
22 1 -1.6940 -1.0096 6.7952
23 1 -2.6773 -0.8780 4.5827
24 1 -0.3634 0.5247 0.8836
25 1 -0.3633 0.5030 -0.8962
26 1 -0.3634 -1.0276 0.0126
27 1 1.4920 -0.1418 -3.1717
28 1 0.2607 -1.1380 -2.3252
29 1 2.7264 -2.0027 -3.6476
30 1 3.6057 -2.9608 -1.8155
31 1 2.1479 -3.9987 -1.8172
32 1 3.7659 -1.8481 0.5220
33 1 2.5239 -2.8291 1.3706
34 1 0.5827 0.1853 6.4040
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252560537.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:23:27
Heat of formation + Delta-G solvation = -61.495429 kcal
Electronic energy + Delta-G solvation = -18800.445446 eV
Core-core repulsion = 15860.339079 eV
Total energy + Delta-G solvation = -2940.106367 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 260.098 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.41214 -35.45550 -35.21385 -33.95180 -33.08051 -31.42228 -29.13234 -27.85052
-26.12377 -24.81696 -23.13583 -20.15977 -19.41120 -18.51892 -17.29589 -16.49023
-16.14730 -15.84792 -15.01876 -14.32086 -14.04629 -13.91104 -13.62531 -13.16032
-12.82930 -12.63796 -12.10088 -11.98481 -11.93156 -11.71853 -11.34065 -11.20123
-11.18002 -10.81676 -10.62677 -10.42928 -10.29440 -10.24576 -10.18823 -9.87429
-9.23674 -8.95743 -8.61186 -8.24610 -6.69228 -5.31015 2.20805 3.08135
3.12442 3.17944 3.95572 4.03852 4.08939 4.52836 4.64478 4.75894
5.07472 5.34041 5.40217 5.43864 5.55573 5.68297 5.70557 5.71202
5.79741 5.86781 5.94531 6.06978 6.09535 6.19685 6.24728 6.42377
6.43722 6.54294 6.77411 6.90134 7.22369 7.33614 7.41232 7.98758
8.89349 10.24456
Molecular weight = 260.10amu
Principal moments of inertia in cm(-1)
A = 0.030881 B = 0.007207 C = 0.006846
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 906.474316 B = 3884.420223 C = 4088.908696
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.174 3.826
3 H 0.078 0.922
4 C -0.146 4.146
5 H 0.077 0.923
6 C 0.066 3.934
7 N -0.684 5.684
8 C 0.065 3.935
9 C -0.137 4.137
10 H 0.092 0.908
11 C 0.150 3.850
12 N -1.024 6.024
13 S 2.728 3.272
14 O -1.003 7.003
15 O -1.001 7.001
16 C -1.017 5.017
17 H 0.102 0.898
18 C 0.133 3.867
19 N -0.847 5.847
20 Si 0.919 3.081
21 H -0.264 1.264
22 H -0.276 1.276
23 H -0.264 1.264
24 H 0.072 0.928
25 H 0.061 0.939
26 H 0.060 0.940
27 H 0.069 0.931
28 H 0.087 0.913
29 H 0.336 0.664
30 H 0.053 0.947
31 H 0.081 0.919
32 H 0.061 0.939
33 H 0.079 0.921
34 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.368 -3.707 -13.692 14.190
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.068 3.932
3 H 0.096 0.904
4 C -0.167 4.167
5 H 0.095 0.905
6 C -0.063 4.063
7 N -0.312 5.312
8 C -0.064 4.064
9 C -0.157 4.157
10 H 0.110 0.890
11 C 0.024 3.976
12 N -0.860 5.860
13 S 2.830 3.170
14 O -0.994 6.994
15 O -0.992 6.992
16 C -1.151 5.151
17 H 0.120 0.880
18 C -0.085 4.085
19 N -0.477 5.477
20 Si 0.743 3.257
21 H -0.189 1.189
22 H -0.201 1.201
23 H -0.189 1.189
24 H 0.091 0.909
25 H 0.080 0.920
26 H 0.079 0.921
27 H 0.088 0.912
28 H 0.105 0.895
29 H 0.150 0.850
30 H 0.072 0.928
31 H 0.099 0.901
32 H 0.079 0.921
33 H 0.097 0.903
34 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 0.478 -3.441 -13.058 13.512
hybrid contribution -0.565 -0.119 0.702 0.909
sum -0.087 -3.560 -12.356 12.859
Atomic orbital electron populations
1.22244 0.95193 1.02596 1.02724 1.20172 0.94012 0.95045 0.84006
0.90408 1.22892 1.01009 0.97210 0.95623 0.90471 1.22197 0.99505
0.91078 0.93497 1.63342 1.32711 1.20577 1.14585 1.21792 0.98104
0.98015 0.88486 1.22617 1.02595 0.95471 0.95045 0.89019 1.20920
0.95663 0.87322 0.93654 1.60519 1.72022 1.30572 1.22886 1.00119
0.75604 0.73004 0.68309 1.93357 1.58976 1.77078 1.69980 1.93351
1.88604 1.32222 1.85017 1.30606 1.29437 1.48914 1.06126 0.87995
1.24750 0.97864 0.90845 0.95019 1.69888 1.36900 1.32116 1.08819
0.86218 0.81404 0.80080 0.77957 1.18878 1.20112 1.18857 0.90933
0.91997 0.92056 0.91218 0.89484 0.84981 0.92826 0.90092 0.92104
0.90263 0.89838
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.72 8.55 37.15 0.32 -2.41 16
2 C 0.17 2.96 3.44 -67.81 -0.23 2.73 16
3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
4 C -0.15 -1.93 2.69 -90.29 -0.24 -2.17 16
5 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
6 C 0.07 0.72 6.87 -3.10 -0.02 0.70 16
7 N -0.68 -7.16 7.57 -111.79 -0.85 -8.00 16
8 C 0.07 0.71 7.43 -3.68 -0.03 0.68 16
9 C -0.14 -1.86 2.87 -90.31 -0.26 -2.12 16
10 H 0.09 1.33 6.89 -51.93 -0.36 0.97 16
11 C 0.15 2.53 6.92 -3.35 -0.02 2.51 16
12 N -1.02 -20.99 3.50 -105.50 -0.37 -21.35 16
13 S 2.73 73.56 5.19 -107.50 -0.56 73.01 16
14 O -1.00 -29.83 17.65 -57.17 -1.01 -30.84 16
15 O -1.00 -29.52 17.64 -57.17 -1.01 -30.53 16
16 C -1.02 -28.06 9.75 30.60 0.30 -27.76 16
17 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16
18 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16
19 N -0.85 -25.12 13.19 55.43 0.73 -24.39 16
20 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16
21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16
22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
23 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16
24 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16
25 H 0.06 0.79 7.73 -51.93 -0.40 0.39 16
26 H 0.06 0.95 6.89 -51.93 -0.36 0.60 16
27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.09 0.98 7.24 -51.93 -0.38 0.61 16
29 H 0.34 2.88 8.94 -39.29 -0.35 2.53 16
30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16
31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
34 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16
LS Contribution 288.52 15.07 4.35 4.35
Total: -1.00 -34.40 288.52 -8.79 -43.19
By element:
Atomic # 1 Polarization: 7.88 SS G_CDS: -4.77 Total: 3.11 kcal
Atomic # 6 Polarization: -23.92 SS G_CDS: -0.29 Total: -24.21 kcal
Atomic # 7 Polarization: -53.26 SS G_CDS: -0.48 Total: -53.75 kcal
Atomic # 8 Polarization: -59.35 SS G_CDS: -2.02 Total: -61.37 kcal
Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal
Atomic # 16 Polarization: 73.56 SS G_CDS: -0.56 Total: 73.01 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -34.40 -8.79 -43.19 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252560537.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.301 kcal
(2) G-P(sol) polarization free energy of solvation -34.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.703 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.495 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds