Wall clock time and date at job start Mon Mar 30 2020 04:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.33917 * 2 1 4 4 C 1.50127 * 110.47180 * 237.66822 * 2 1 3 5 5 H 1.09002 * 110.06888 * 160.79225 * 4 2 1 6 6 C 1.50757 * 126.00334 * 24.57593 * 4 2 1 7 7 N 1.50187 * 101.72386 * 204.69659 * 6 4 2 8 8 C 1.49714 * 107.64143 * 25.71321 * 7 6 4 9 9 C 1.50126 * 104.73091 * 7.47522 * 8 7 6 10 10 H 1.08998 * 110.05530 * 79.73180 * 9 8 7 11 11 C 1.50727 * 126.57636 * 216.24986 * 9 8 7 12 12 N 1.49299 * 110.37622 * 122.26529 * 2 1 3 13 13 S 1.65597 * 126.10967 * 291.50620 * 12 2 1 14 14 O 1.42102 * 106.40224 * 203.54072 * 13 12 2 15 15 O 1.42096 * 106.40437 * 336.46337 * 13 12 2 16 16 C 1.76206 * 107.21618 * 90.00277 * 13 12 2 17 17 H 1.07996 * 120.00024 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99776 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00164 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 119.99733 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47045 * 60.00109 * 20 18 16 22 22 H 1.48501 * 109.47012 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47121 * 300.00212 * 20 18 16 24 24 H 1.09001 * 109.47237 * 300.70480 * 1 2 3 25 25 H 1.09006 * 109.47052 * 60.69816 * 1 2 3 26 26 H 1.08999 * 109.47307 * 180.70224 * 1 2 3 27 27 H 1.09000 * 110.70786 * 86.83093 * 6 4 2 28 28 H 1.08991 * 111.41353 * 322.87520 * 6 4 2 29 29 H 1.00904 * 110.99839 * 264.05929 * 7 6 4 30 30 H 1.08998 * 110.38640 * 248.66759 * 8 7 6 31 31 H 1.08997 * 110.48152 * 126.33863 * 8 7 6 32 32 H 1.09004 * 110.86331 * 36.08208 * 11 9 8 33 33 H 1.09003 * 110.86251 * 272.42952 * 11 9 8 34 34 H 0.97004 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0550 -0.7522 -1.1884 5 1 3.0916 -0.4741 -1.3789 6 6 1.3259 -0.9751 -2.4890 7 7 1.9860 -2.2241 -2.9988 8 6 2.5158 -2.9727 -1.8154 9 6 1.9850 -2.2288 -0.6243 10 1 0.9479 -2.5091 -0.4403 11 6 2.6988 -2.0010 0.6836 12 7 2.0498 -0.7471 1.1835 13 16 1.9298 -0.2742 2.7659 14 8 2.9803 -0.9312 3.4618 15 8 1.7709 1.1378 2.7518 16 6 0.4241 -0.9381 3.3959 17 1 -0.2142 -1.5301 2.7569 18 6 0.0609 -0.7019 4.7049 19 7 0.8380 0.0194 5.4830 20 14 -1.5356 -1.4051 5.3726 21 1 -1.5050 -2.8863 5.2705 22 1 -1.6940 -1.0096 6.7952 23 1 -2.6773 -0.8780 4.5827 24 1 -0.3634 0.5247 0.8836 25 1 -0.3633 0.5030 -0.8962 26 1 -0.3634 -1.0276 0.0126 27 1 1.4920 -0.1418 -3.1717 28 1 0.2607 -1.1380 -2.3252 29 1 2.7264 -2.0027 -3.6476 30 1 3.6057 -2.9608 -1.8155 31 1 2.1479 -3.9987 -1.8172 32 1 3.7659 -1.8481 0.5220 33 1 2.5239 -2.8291 1.3706 34 1 0.5827 0.1853 6.4040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252560537.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:27 Heat of formation + Delta-G solvation = -61.495429 kcal Electronic energy + Delta-G solvation = -18800.445446 eV Core-core repulsion = 15860.339079 eV Total energy + Delta-G solvation = -2940.106367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41214 -35.45550 -35.21385 -33.95180 -33.08051 -31.42228 -29.13234 -27.85052 -26.12377 -24.81696 -23.13583 -20.15977 -19.41120 -18.51892 -17.29589 -16.49023 -16.14730 -15.84792 -15.01876 -14.32086 -14.04629 -13.91104 -13.62531 -13.16032 -12.82930 -12.63796 -12.10088 -11.98481 -11.93156 -11.71853 -11.34065 -11.20123 -11.18002 -10.81676 -10.62677 -10.42928 -10.29440 -10.24576 -10.18823 -9.87429 -9.23674 -8.95743 -8.61186 -8.24610 -6.69228 -5.31015 2.20805 3.08135 3.12442 3.17944 3.95572 4.03852 4.08939 4.52836 4.64478 4.75894 5.07472 5.34041 5.40217 5.43864 5.55573 5.68297 5.70557 5.71202 5.79741 5.86781 5.94531 6.06978 6.09535 6.19685 6.24728 6.42377 6.43722 6.54294 6.77411 6.90134 7.22369 7.33614 7.41232 7.98758 8.89349 10.24456 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.007207 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.474316 B = 3884.420223 C = 4088.908696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.174 3.826 3 H 0.078 0.922 4 C -0.146 4.146 5 H 0.077 0.923 6 C 0.066 3.934 7 N -0.684 5.684 8 C 0.065 3.935 9 C -0.137 4.137 10 H 0.092 0.908 11 C 0.150 3.850 12 N -1.024 6.024 13 S 2.728 3.272 14 O -1.003 7.003 15 O -1.001 7.001 16 C -1.017 5.017 17 H 0.102 0.898 18 C 0.133 3.867 19 N -0.847 5.847 20 Si 0.919 3.081 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.264 1.264 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.336 0.664 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -3.707 -13.692 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.068 3.932 3 H 0.096 0.904 4 C -0.167 4.167 5 H 0.095 0.905 6 C -0.063 4.063 7 N -0.312 5.312 8 C -0.064 4.064 9 C -0.157 4.157 10 H 0.110 0.890 11 C 0.024 3.976 12 N -0.860 5.860 13 S 2.830 3.170 14 O -0.994 6.994 15 O -0.992 6.992 16 C -1.151 5.151 17 H 0.120 0.880 18 C -0.085 4.085 19 N -0.477 5.477 20 Si 0.743 3.257 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.189 1.189 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.150 0.850 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.478 -3.441 -13.058 13.512 hybrid contribution -0.565 -0.119 0.702 0.909 sum -0.087 -3.560 -12.356 12.859 Atomic orbital electron populations 1.22244 0.95193 1.02596 1.02724 1.20172 0.94012 0.95045 0.84006 0.90408 1.22892 1.01009 0.97210 0.95623 0.90471 1.22197 0.99505 0.91078 0.93497 1.63342 1.32711 1.20577 1.14585 1.21792 0.98104 0.98015 0.88486 1.22617 1.02595 0.95471 0.95045 0.89019 1.20920 0.95663 0.87322 0.93654 1.60519 1.72022 1.30572 1.22886 1.00119 0.75604 0.73004 0.68309 1.93357 1.58976 1.77078 1.69980 1.93351 1.88604 1.32222 1.85017 1.30606 1.29437 1.48914 1.06126 0.87995 1.24750 0.97864 0.90845 0.95019 1.69888 1.36900 1.32116 1.08819 0.86218 0.81404 0.80080 0.77957 1.18878 1.20112 1.18857 0.90933 0.91997 0.92056 0.91218 0.89484 0.84981 0.92826 0.90092 0.92104 0.90263 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.55 37.15 0.32 -2.41 16 2 C 0.17 2.96 3.44 -67.81 -0.23 2.73 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.15 -1.93 2.69 -90.29 -0.24 -2.17 16 5 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.07 0.72 6.87 -3.10 -0.02 0.70 16 7 N -0.68 -7.16 7.57 -111.79 -0.85 -8.00 16 8 C 0.07 0.71 7.43 -3.68 -0.03 0.68 16 9 C -0.14 -1.86 2.87 -90.31 -0.26 -2.12 16 10 H 0.09 1.33 6.89 -51.93 -0.36 0.97 16 11 C 0.15 2.53 6.92 -3.35 -0.02 2.51 16 12 N -1.02 -20.99 3.50 -105.50 -0.37 -21.35 16 13 S 2.73 73.56 5.19 -107.50 -0.56 73.01 16 14 O -1.00 -29.83 17.65 -57.17 -1.01 -30.84 16 15 O -1.00 -29.52 17.64 -57.17 -1.01 -30.53 16 16 C -1.02 -28.06 9.75 30.60 0.30 -27.76 16 17 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 18 C 0.13 3.73 5.46 -17.82 -0.10 3.63 16 19 N -0.85 -25.12 13.19 55.43 0.73 -24.39 16 20 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 24 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.06 0.79 7.73 -51.93 -0.40 0.39 16 26 H 0.06 0.95 6.89 -51.93 -0.36 0.60 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.98 7.24 -51.93 -0.38 0.61 16 29 H 0.34 2.88 8.94 -39.29 -0.35 2.53 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 288.52 15.07 4.35 4.35 Total: -1.00 -34.40 288.52 -8.79 -43.19 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.77 Total: 3.11 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -0.29 Total: -24.21 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.48 Total: -53.75 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -2.02 Total: -61.37 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 73.56 SS G_CDS: -0.56 Total: 73.01 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.40 -8.79 -43.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252560537.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.301 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds