Wall clock time and date at job start Mon Mar 30 2020 04:23:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09002 * 110.33917 * 2 1
4 4 C 1.50127 * 110.47180 * 237.66822 * 2 1 3
5 5 H 1.09002 * 110.06888 * 160.79225 * 4 2 1
6 6 C 1.50757 * 126.00334 * 24.57593 * 4 2 1
7 7 N 1.50187 * 101.72386 * 204.69659 * 6 4 2
8 8 C 1.49714 * 107.64143 * 25.71321 * 7 6 4
9 9 C 1.50126 * 104.73091 * 7.47522 * 8 7 6
10 10 H 1.08998 * 110.05530 * 79.73180 * 9 8 7
11 11 C 1.50727 * 126.57636 * 216.24986 * 9 8 7
12 12 N 1.49299 * 110.37622 * 122.26529 * 2 1 3
13 13 S 1.65597 * 126.10967 * 291.50620 * 12 2 1
14 14 O 1.42102 * 106.40224 * 203.54072 * 13 12 2
15 15 O 1.42096 * 106.40437 * 336.46337 * 13 12 2
16 16 C 1.76206 * 107.21618 * 90.00277 * 13 12 2
17 17 H 1.07996 * 120.00024 * 359.97438 * 16 13 12
18 18 C 1.37881 * 119.99776 * 179.97438 * 16 13 12
19 19 N 1.31512 * 120.00164 * 0.02562 * 18 16 13
20 20 Si 1.86796 * 119.99733 * 179.97438 * 18 16 13
21 21 H 1.48500 * 109.47045 * 60.00109 * 20 18 16
22 22 H 1.48501 * 109.47012 * 180.02562 * 20 18 16
23 23 H 1.48499 * 109.47121 * 300.00212 * 20 18 16
24 24 H 1.09001 * 109.47237 * 300.70480 * 1 2 3
25 25 H 1.09006 * 109.47052 * 60.69816 * 1 2 3
26 26 H 1.08999 * 109.47307 * 180.70224 * 1 2 3
27 27 H 1.09000 * 110.70786 * 86.83093 * 6 4 2
28 28 H 1.08991 * 111.41353 * 322.87520 * 6 4 2
29 29 H 1.00904 * 110.99839 * 264.05929 * 7 6 4
30 30 H 1.08998 * 110.38640 * 248.66759 * 8 7 6
31 31 H 1.08997 * 110.48152 * 126.33863 * 8 7 6
32 32 H 1.09004 * 110.86331 * 36.08208 * 11 9 8
33 33 H 1.09003 * 110.86251 * 272.42952 * 11 9 8
34 34 H 0.97004 * 120.00199 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9088 1.0221 0.0000
4 6 2.0550 -0.7522 -1.1884
5 1 3.0916 -0.4741 -1.3789
6 6 1.3259 -0.9751 -2.4890
7 7 1.9860 -2.2241 -2.9988
8 6 2.5158 -2.9727 -1.8154
9 6 1.9850 -2.2288 -0.6243
10 1 0.9479 -2.5091 -0.4403
11 6 2.6988 -2.0010 0.6836
12 7 2.0498 -0.7471 1.1835
13 16 1.9298 -0.2742 2.7659
14 8 2.9803 -0.9312 3.4618
15 8 1.7709 1.1378 2.7518
16 6 0.4241 -0.9381 3.3959
17 1 -0.2142 -1.5301 2.7569
18 6 0.0609 -0.7019 4.7049
19 7 0.8380 0.0194 5.4830
20 14 -1.5356 -1.4051 5.3726
21 1 -1.5050 -2.8863 5.2705
22 1 -1.6940 -1.0096 6.7952
23 1 -2.6773 -0.8780 4.5827
24 1 -0.3634 0.5247 0.8836
25 1 -0.3633 0.5030 -0.8962
26 1 -0.3634 -1.0276 0.0126
27 1 1.4920 -0.1418 -3.1717
28 1 0.2607 -1.1380 -2.3252
29 1 2.7264 -2.0027 -3.6476
30 1 3.6057 -2.9608 -1.8155
31 1 2.1479 -3.9987 -1.8172
32 1 3.7659 -1.8481 0.5220
33 1 2.5239 -2.8291 1.3706
34 1 0.5827 0.1853 6.4040
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000252560537.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:23:26
Heat of formation + Delta-G solvation = -90.776890 kcal
Electronic energy + Delta-G solvation = -18801.715186 eV
Core-core repulsion = 15860.339079 eV
Total energy + Delta-G solvation = -2941.376107 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 260.098 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.55101 -37.47593 -36.60088 -36.18804 -35.20730 -32.67618 -30.39619 -28.90807
-28.26029 -26.06128 -24.33633 -21.24560 -20.91645 -20.26710 -19.11912 -18.19662
-17.62567 -17.01814 -16.85324 -16.07750 -15.88407 -15.20181 -15.02531 -14.56769
-14.10108 -13.92679 -13.81482 -13.45284 -13.26439 -13.03869 -12.96268 -12.93231
-12.59649 -12.50746 -12.46491 -12.35159 -12.15238 -11.75902 -11.52384 -11.26610
-11.04054 -11.00737 -9.90889 -9.44420 -8.77265 -7.50952 0.22148 1.30471
1.32927 1.46006 2.17296 2.54211 2.75381 2.88001 3.22814 3.63613
3.83152 3.97896 4.11879 4.21164 4.31857 4.37917 4.44667 4.48321
4.56930 4.70435 4.78023 4.81458 4.92402 4.99537 5.13079 5.18149
5.21527 5.27213 5.40818 5.50205 5.66107 5.71084 5.88731 6.52443
6.74932 8.18188
Molecular weight = 260.10amu
Principal moments of inertia in cm(-1)
A = 0.030881 B = 0.007207 C = 0.006846
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 906.474316 B = 3884.420223 C = 4088.908696
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.163 3.837
3 H 0.067 0.933
4 C -0.134 4.134
5 H 0.085 0.915
6 C 0.073 3.927
7 N -0.683 5.683
8 C 0.071 3.929
9 C -0.128 4.128
10 H 0.083 0.917
11 C 0.140 3.860
12 N -1.029 6.029
13 S 2.731 3.269
14 O -1.044 7.044
15 O -1.040 7.040
16 C -1.034 5.034
17 H 0.118 0.882
18 C 0.070 3.930
19 N -0.897 5.897
20 Si 0.989 3.011
21 H -0.250 1.250
22 H -0.263 1.263
23 H -0.250 1.250
24 H 0.036 0.964
25 H 0.098 0.902
26 H 0.066 0.934
27 H 0.093 0.907
28 H 0.086 0.914
29 H 0.350 0.650
30 H 0.068 0.932
31 H 0.089 0.911
32 H 0.073 0.927
33 H 0.070 0.930
34 H 0.299 0.701
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.826 -5.002 -15.932 16.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.058 3.942
3 H 0.085 0.915
4 C -0.156 4.156
5 H 0.103 0.897
6 C -0.057 4.057
7 N -0.312 5.312
8 C -0.058 4.058
9 C -0.149 4.149
10 H 0.102 0.898
11 C 0.015 3.985
12 N -0.868 5.868
13 S 2.835 3.165
14 O -1.034 7.034
15 O -1.030 7.030
16 C -1.168 5.168
17 H 0.136 0.864
18 C -0.143 4.143
19 N -0.528 5.528
20 Si 0.807 3.193
21 H -0.174 1.174
22 H -0.187 1.187
23 H -0.173 1.173
24 H 0.055 0.945
25 H 0.117 0.883
26 H 0.085 0.915
27 H 0.112 0.888
28 H 0.104 0.896
29 H 0.166 0.834
30 H 0.087 0.913
31 H 0.107 0.893
32 H 0.091 0.909
33 H 0.088 0.912
34 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -0.691 -4.730 -15.318 16.047
hybrid contribution -0.124 0.295 1.313 1.351
sum -0.816 -4.435 -14.006 14.714
Atomic orbital electron populations
1.22240 0.94525 1.02894 1.02843 1.20456 0.94700 0.94789 0.84265
0.91481 1.22847 1.01630 0.95744 0.95361 0.89704 1.22231 0.99139
0.92050 0.92242 1.63326 1.33441 1.20156 1.14272 1.21788 0.99027
0.97997 0.86963 1.22508 1.01718 0.96505 0.94167 0.89839 1.21179
0.96577 0.85438 0.95279 1.60020 1.72525 1.32447 1.21830 0.99524
0.75253 0.72160 0.69567 1.93291 1.60274 1.77470 1.72380 1.93286
1.88886 1.34504 1.86367 1.30921 1.29851 1.49065 1.06956 0.86423
1.26036 1.02061 0.90870 0.95319 1.69987 1.39345 1.33808 1.09682
0.85183 0.76278 0.79885 0.77975 1.17369 1.18654 1.17327 0.94459
0.88290 0.91526 0.88841 0.89613 0.83399 0.91312 0.89317 0.90910
0.91163 0.89069
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.23 8.55 71.98 0.62 -4.61 16
2 C 0.16 5.46 3.44 43.52 0.15 5.60 16
3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16
4 C -0.13 -3.22 2.69 -10.58 -0.03 -3.25 16
5 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
6 C 0.07 1.29 6.87 84.93 0.58 1.88 16
7 N -0.68 -11.50 7.57 -507.59 -3.84 -15.34 16
8 C 0.07 1.31 7.43 84.83 0.63 1.94 16
9 C -0.13 -3.21 2.87 -10.59 -0.03 -3.24 16
10 H 0.08 2.26 6.89 -2.39 -0.02 2.24 16
11 C 0.14 4.65 6.92 85.00 0.59 5.24 16
12 N -1.03 -42.75 3.50 -487.69 -1.71 -44.46 16
13 S 2.73 152.85 5.19 -56.49 -0.29 152.55 16
14 O -1.04 -64.71 17.65 -128.00 -2.26 -66.97 16
15 O -1.04 -64.16 17.64 -128.00 -2.26 -66.42 16
16 C -1.03 -58.15 9.75 67.74 0.66 -57.49 16
17 H 0.12 5.99 7.81 -2.91 -0.02 5.96 16
18 C 0.07 3.95 5.46 84.66 0.46 4.41 16
19 N -0.90 -54.64 13.19 21.45 0.28 -54.36 16
20 Si 0.99 41.88 29.54 68.60 2.03 43.91 16
21 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16
22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16
24 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16
25 H 0.10 2.31 7.73 -2.38 -0.02 2.29 16
26 H 0.07 1.99 6.89 -2.39 -0.02 1.97 16
27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
28 H 0.09 1.60 7.24 -2.39 -0.02 1.59 16
29 H 0.35 4.45 8.94 -89.69 -0.80 3.65 16
30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
32 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16
33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16
34 H 0.30 16.37 8.31 -92.70 -0.77 15.60 16
Total: -1.00 -77.23 288.52 -4.12 -81.34
By element:
Atomic # 1 Polarization: 18.95 SS G_CDS: 0.30 Total: 19.25 kcal
Atomic # 6 Polarization: -53.15 SS G_CDS: 3.63 Total: -49.52 kcal
Atomic # 7 Polarization: -108.89 SS G_CDS: -5.26 Total: -114.15 kcal
Atomic # 8 Polarization: -128.87 SS G_CDS: -4.52 Total: -133.39 kcal
Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal
Atomic # 16 Polarization: 152.85 SS G_CDS: -0.29 Total: 152.55 kcal
Total: -77.23 -4.12 -81.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252560537.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.433 kcal
(2) G-P(sol) polarization free energy of solvation -77.229 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.116 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.344 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.777 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds