Wall clock time and date at job start Mon Mar 30 2020 04:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.33917 * 2 1 4 4 C 1.50127 * 110.47180 * 237.66822 * 2 1 3 5 5 H 1.09002 * 110.06888 * 160.79225 * 4 2 1 6 6 C 1.50757 * 126.00334 * 24.57593 * 4 2 1 7 7 N 1.50187 * 101.72386 * 204.69659 * 6 4 2 8 8 C 1.49714 * 107.64143 * 25.71321 * 7 6 4 9 9 C 1.50126 * 104.73091 * 7.47522 * 8 7 6 10 10 H 1.08998 * 110.05530 * 79.73180 * 9 8 7 11 11 C 1.50727 * 126.57636 * 216.24986 * 9 8 7 12 12 N 1.49299 * 110.37622 * 122.26529 * 2 1 3 13 13 S 1.65597 * 126.10967 * 291.50620 * 12 2 1 14 14 O 1.42102 * 106.40224 * 203.54072 * 13 12 2 15 15 O 1.42096 * 106.40437 * 336.46337 * 13 12 2 16 16 C 1.76206 * 107.21618 * 90.00277 * 13 12 2 17 17 H 1.07996 * 120.00024 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99776 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00164 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 119.99733 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47045 * 60.00109 * 20 18 16 22 22 H 1.48501 * 109.47012 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47121 * 300.00212 * 20 18 16 24 24 H 1.09001 * 109.47237 * 300.70480 * 1 2 3 25 25 H 1.09006 * 109.47052 * 60.69816 * 1 2 3 26 26 H 1.08999 * 109.47307 * 180.70224 * 1 2 3 27 27 H 1.09000 * 110.70786 * 86.83093 * 6 4 2 28 28 H 1.08991 * 111.41353 * 322.87520 * 6 4 2 29 29 H 1.00904 * 110.99839 * 264.05929 * 7 6 4 30 30 H 1.08998 * 110.38640 * 248.66759 * 8 7 6 31 31 H 1.08997 * 110.48152 * 126.33863 * 8 7 6 32 32 H 1.09004 * 110.86331 * 36.08208 * 11 9 8 33 33 H 1.09003 * 110.86251 * 272.42952 * 11 9 8 34 34 H 0.97004 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0550 -0.7522 -1.1884 5 1 3.0916 -0.4741 -1.3789 6 6 1.3259 -0.9751 -2.4890 7 7 1.9860 -2.2241 -2.9988 8 6 2.5158 -2.9727 -1.8154 9 6 1.9850 -2.2288 -0.6243 10 1 0.9479 -2.5091 -0.4403 11 6 2.6988 -2.0010 0.6836 12 7 2.0498 -0.7471 1.1835 13 16 1.9298 -0.2742 2.7659 14 8 2.9803 -0.9312 3.4618 15 8 1.7709 1.1378 2.7518 16 6 0.4241 -0.9381 3.3959 17 1 -0.2142 -1.5301 2.7569 18 6 0.0609 -0.7019 4.7049 19 7 0.8380 0.0194 5.4830 20 14 -1.5356 -1.4051 5.3726 21 1 -1.5050 -2.8863 5.2705 22 1 -1.6940 -1.0096 6.7952 23 1 -2.6773 -0.8780 4.5827 24 1 -0.3634 0.5247 0.8836 25 1 -0.3633 0.5030 -0.8962 26 1 -0.3634 -1.0276 0.0126 27 1 1.4920 -0.1418 -3.1717 28 1 0.2607 -1.1380 -2.3252 29 1 2.7264 -2.0027 -3.6476 30 1 3.6057 -2.9608 -1.8155 31 1 2.1479 -3.9987 -1.8172 32 1 3.7659 -1.8481 0.5220 33 1 2.5239 -2.8291 1.3706 34 1 0.5827 0.1853 6.4040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252560537.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:26 Heat of formation + Delta-G solvation = -90.776890 kcal Electronic energy + Delta-G solvation = -18801.715186 eV Core-core repulsion = 15860.339079 eV Total energy + Delta-G solvation = -2941.376107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55101 -37.47593 -36.60088 -36.18804 -35.20730 -32.67618 -30.39619 -28.90807 -28.26029 -26.06128 -24.33633 -21.24560 -20.91645 -20.26710 -19.11912 -18.19662 -17.62567 -17.01814 -16.85324 -16.07750 -15.88407 -15.20181 -15.02531 -14.56769 -14.10108 -13.92679 -13.81482 -13.45284 -13.26439 -13.03869 -12.96268 -12.93231 -12.59649 -12.50746 -12.46491 -12.35159 -12.15238 -11.75902 -11.52384 -11.26610 -11.04054 -11.00737 -9.90889 -9.44420 -8.77265 -7.50952 0.22148 1.30471 1.32927 1.46006 2.17296 2.54211 2.75381 2.88001 3.22814 3.63613 3.83152 3.97896 4.11879 4.21164 4.31857 4.37917 4.44667 4.48321 4.56930 4.70435 4.78023 4.81458 4.92402 4.99537 5.13079 5.18149 5.21527 5.27213 5.40818 5.50205 5.66107 5.71084 5.88731 6.52443 6.74932 8.18188 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030881 B = 0.007207 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.474316 B = 3884.420223 C = 4088.908696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.134 4.134 5 H 0.085 0.915 6 C 0.073 3.927 7 N -0.683 5.683 8 C 0.071 3.929 9 C -0.128 4.128 10 H 0.083 0.917 11 C 0.140 3.860 12 N -1.029 6.029 13 S 2.731 3.269 14 O -1.044 7.044 15 O -1.040 7.040 16 C -1.034 5.034 17 H 0.118 0.882 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.989 3.011 21 H -0.250 1.250 22 H -0.263 1.263 23 H -0.250 1.250 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.350 0.650 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 -5.002 -15.932 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.085 0.915 4 C -0.156 4.156 5 H 0.103 0.897 6 C -0.057 4.057 7 N -0.312 5.312 8 C -0.058 4.058 9 C -0.149 4.149 10 H 0.102 0.898 11 C 0.015 3.985 12 N -0.868 5.868 13 S 2.835 3.165 14 O -1.034 7.034 15 O -1.030 7.030 16 C -1.168 5.168 17 H 0.136 0.864 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.807 3.193 21 H -0.174 1.174 22 H -0.187 1.187 23 H -0.173 1.173 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.166 0.834 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.691 -4.730 -15.318 16.047 hybrid contribution -0.124 0.295 1.313 1.351 sum -0.816 -4.435 -14.006 14.714 Atomic orbital electron populations 1.22240 0.94525 1.02894 1.02843 1.20456 0.94700 0.94789 0.84265 0.91481 1.22847 1.01630 0.95744 0.95361 0.89704 1.22231 0.99139 0.92050 0.92242 1.63326 1.33441 1.20156 1.14272 1.21788 0.99027 0.97997 0.86963 1.22508 1.01718 0.96505 0.94167 0.89839 1.21179 0.96577 0.85438 0.95279 1.60020 1.72525 1.32447 1.21830 0.99524 0.75253 0.72160 0.69567 1.93291 1.60274 1.77470 1.72380 1.93286 1.88886 1.34504 1.86367 1.30921 1.29851 1.49065 1.06956 0.86423 1.26036 1.02061 0.90870 0.95319 1.69987 1.39345 1.33808 1.09682 0.85183 0.76278 0.79885 0.77975 1.17369 1.18654 1.17327 0.94459 0.88290 0.91526 0.88841 0.89613 0.83399 0.91312 0.89317 0.90910 0.91163 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.23 8.55 71.98 0.62 -4.61 16 2 C 0.16 5.46 3.44 43.52 0.15 5.60 16 3 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.13 -3.22 2.69 -10.58 -0.03 -3.25 16 5 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 6 C 0.07 1.29 6.87 84.93 0.58 1.88 16 7 N -0.68 -11.50 7.57 -507.59 -3.84 -15.34 16 8 C 0.07 1.31 7.43 84.83 0.63 1.94 16 9 C -0.13 -3.21 2.87 -10.59 -0.03 -3.24 16 10 H 0.08 2.26 6.89 -2.39 -0.02 2.24 16 11 C 0.14 4.65 6.92 85.00 0.59 5.24 16 12 N -1.03 -42.75 3.50 -487.69 -1.71 -44.46 16 13 S 2.73 152.85 5.19 -56.49 -0.29 152.55 16 14 O -1.04 -64.71 17.65 -128.00 -2.26 -66.97 16 15 O -1.04 -64.16 17.64 -128.00 -2.26 -66.42 16 16 C -1.03 -58.15 9.75 67.74 0.66 -57.49 16 17 H 0.12 5.99 7.81 -2.91 -0.02 5.96 16 18 C 0.07 3.95 5.46 84.66 0.46 4.41 16 19 N -0.90 -54.64 13.19 21.45 0.28 -54.36 16 20 Si 0.99 41.88 29.54 68.60 2.03 43.91 16 21 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 25 H 0.10 2.31 7.73 -2.38 -0.02 2.29 16 26 H 0.07 1.99 6.89 -2.39 -0.02 1.97 16 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.60 7.24 -2.39 -0.02 1.59 16 29 H 0.35 4.45 8.94 -89.69 -0.80 3.65 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.30 16.37 8.31 -92.70 -0.77 15.60 16 Total: -1.00 -77.23 288.52 -4.12 -81.34 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.30 Total: 19.25 kcal Atomic # 6 Polarization: -53.15 SS G_CDS: 3.63 Total: -49.52 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -5.26 Total: -114.15 kcal Atomic # 8 Polarization: -128.87 SS G_CDS: -4.52 Total: -133.39 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 152.85 SS G_CDS: -0.29 Total: 152.55 kcal Total: -77.23 -4.12 -81.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252560537.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.433 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds