Wall clock time and date at job start Mon Mar 30 2020 05:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00386 * 2 1 4 4 H 1.48497 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47056 * 299.99915 * 3 2 1 6 6 H 1.48505 * 109.46918 * 60.00179 * 3 2 1 7 7 C 1.37882 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99690 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00282 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.47062 * 125.40573 * 90.00198 * 10 9 7 12 12 C 1.54102 * 103.98842 * 180.02562 * 11 10 9 13 13 N 1.47047 * 103.86597 * 359.92478 * 12 11 10 14 14 C 1.46495 * 125.41333 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47348 * 90.00407 * 14 13 12 16 16 C 1.38233 * 119.99649 * 269.72940 * 15 14 13 17 17 C 1.38239 * 119.99625 * 179.75850 * 16 15 14 18 18 C 1.38235 * 119.99983 * 0.51197 * 17 16 15 19 19 C 1.38237 * 119.99971 * 359.74576 * 18 17 16 20 20 C 1.38228 * 119.99913 * 89.99752 * 15 14 13 21 21 C 1.33956 * 109.18037 * 0.02562 * 13 12 11 22 22 O 1.21585 * 123.04187 * 179.97438 * 21 13 12 23 23 H 0.97003 * 119.99865 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46669 * 59.99586 * 9 7 2 25 25 H 1.08994 * 109.46641 * 300.00018 * 9 7 2 26 26 H 1.09002 * 110.54996 * 61.39999 * 11 10 9 27 27 H 1.08997 * 110.55013 * 298.73283 * 11 10 9 28 28 H 1.09001 * 110.55154 * 118.52658 * 12 11 10 29 29 H 1.09000 * 110.54868 * 241.18676 * 12 11 10 30 30 H 1.09008 * 109.47393 * 210.00511 * 14 13 12 31 31 H 1.09003 * 109.47621 * 330.00284 * 14 13 12 32 32 H 1.08000 * 120.00378 * 359.97438 * 16 15 14 33 33 H 1.08002 * 119.99739 * 180.22684 * 17 16 15 34 34 H 1.07994 * 119.99836 * 179.71634 * 18 17 16 35 35 H 1.07999 * 119.99768 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00366 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4993 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 2.7565 -4.2604 1.1992 12 6 3.6892 -5.3504 0.6365 13 7 3.5625 -5.2045 -0.8212 14 6 4.2595 -6.0190 -1.8197 15 6 3.4197 -7.2229 -2.1609 16 6 3.5701 -8.3958 -1.4450 17 6 2.7962 -9.4986 -1.7548 18 6 1.8795 -9.4318 -2.7873 19 6 1.7330 -8.2605 -3.5067 20 6 2.5030 -7.1560 -3.1934 21 6 2.7093 -4.2077 -1.0913 22 8 2.4202 -3.8709 -2.2232 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 1.9606 -4.7085 1.7941 27 1 3.3209 -3.5434 1.7953 28 1 4.7178 -5.1734 0.9508 29 1 3.3579 -6.3389 0.9545 30 1 4.4274 -5.4264 -2.7191 31 1 5.2177 -6.3469 -1.4165 32 1 4.2896 -8.4496 -0.6414 33 1 2.9111 -10.4139 -1.1930 34 1 1.2783 -10.2948 -3.0322 35 1 1.0171 -8.2084 -4.3136 36 1 2.3889 -6.2411 -3.7558 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:07 Heat of formation + Delta-G solvation = 14.899229 kcal Electronic energy + Delta-G solvation = -19056.274127 eV Core-core repulsion = 16119.869624 eV Total energy + Delta-G solvation = -2936.404503 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34806 -38.97440 -35.48215 -34.73419 -32.83949 -31.28347 -30.85241 -28.82745 -27.09916 -25.82956 -23.20639 -22.55010 -22.08396 -21.08524 -18.96417 -16.95982 -16.70705 -16.11000 -15.79858 -15.45507 -15.01433 -14.85884 -14.44215 -13.68627 -13.39508 -13.34427 -13.16746 -13.01232 -12.49276 -12.30840 -11.99548 -11.78507 -11.61981 -11.23011 -11.12568 -10.92378 -10.84786 -10.61769 -10.12430 -9.60498 -9.28011 -8.87971 -8.76872 -8.43935 -8.38224 -7.51030 -6.04032 -4.09141 1.31024 1.44776 3.14499 3.30600 3.38086 3.43110 3.87167 4.00455 4.41886 4.61299 4.81929 4.84195 4.91552 5.00937 5.10970 5.21382 5.29801 5.35407 5.50923 5.55296 5.67716 5.77440 5.90502 6.01284 6.09326 6.16547 6.38441 6.46036 6.55227 6.71426 7.03155 7.10899 7.32111 7.54916 7.72992 7.96921 8.23317 8.52396 8.93102 9.41247 9.59394 11.03489 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.004626 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.376536 B = 6051.588243 C = 6282.108526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.278 3.722 10 N -0.614 5.614 11 C 0.095 3.905 12 C 0.097 3.903 13 N -0.640 5.640 14 C 0.193 3.807 15 C -0.105 4.105 16 C -0.108 4.108 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.091 4.091 21 C 0.695 3.305 22 O -0.587 6.587 23 H 0.263 0.737 24 H 0.042 0.958 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 -17.982 0.297 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.160 3.840 10 N -0.351 5.351 11 C -0.030 4.030 12 C -0.027 4.027 13 N -0.380 5.380 14 C 0.070 3.930 15 C -0.107 4.107 16 C -0.126 4.126 17 C -0.147 4.147 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.110 4.110 21 C 0.397 3.603 22 O -0.465 6.465 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.212 -17.583 -0.367 19.008 hybrid contribution 0.362 0.860 0.219 0.959 sum 7.574 -16.722 -0.147 18.358 Atomic orbital electron populations 1.69942 1.05992 1.26976 1.50569 1.24939 0.94894 0.99241 0.95059 0.86415 0.80000 0.83260 0.77589 1.19802 1.20843 1.20946 1.21546 0.93578 0.90683 1.50897 0.92303 1.19084 0.86030 0.80612 0.98320 1.47809 1.47433 1.36115 1.03709 1.22173 0.96396 0.93974 0.90436 1.22270 1.00062 0.99169 0.81165 1.47198 1.48831 1.36266 1.05689 1.19940 0.92328 0.88534 0.92148 1.20409 0.98659 0.95380 0.96214 1.21017 0.99634 0.92807 0.99168 1.21076 0.97006 0.98461 0.98130 1.21135 0.98613 0.97914 0.96293 1.21190 0.99570 0.93295 1.00141 1.21274 0.94410 0.98491 0.96782 1.16009 0.79361 0.79489 0.85480 1.90842 1.65565 1.68851 1.21201 0.92720 0.93963 0.94689 0.91188 0.90446 0.90942 0.91219 0.89203 0.90001 0.86331 0.86360 0.86420 0.86164 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.28 7.48 5.76 -5.20 -0.03 7.45 16 10 N -0.61 -13.95 2.95 -180.09 -0.53 -14.48 16 11 C 0.09 1.57 7.67 -3.16 -0.02 1.54 16 12 C 0.10 1.30 7.68 -3.17 -0.02 1.28 16 13 N -0.64 -10.86 2.94 -180.10 -0.53 -11.39 16 14 C 0.19 2.67 6.12 -5.19 -0.03 2.64 16 15 C -0.11 -1.42 5.46 -104.63 -0.57 -1.99 16 16 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 17 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 18 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 19 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.09 -1.33 9.70 -39.58 -0.38 -1.71 16 21 C 0.69 15.74 8.30 -88.12 -0.73 15.01 16 22 O -0.59 -15.62 17.04 5.29 0.09 -15.53 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.04 1.27 7.93 -51.93 -0.41 0.86 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.35 7.86 -51.92 -0.41 0.94 16 31 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -34.63 313.45 -9.34 -43.96 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.01 Total: -1.49 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.79 Total: 3.20 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.32 Total: -51.89 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.09 Total: -15.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.63 -9.34 -43.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.864 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds