Wall clock time and date at job start Mon Mar 30 2020 05:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00386 * 2 1 4 4 H 1.48497 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47056 * 299.99915 * 3 2 1 6 6 H 1.48505 * 109.46918 * 60.00179 * 3 2 1 7 7 C 1.37882 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99690 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00282 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.47062 * 125.40573 * 90.00198 * 10 9 7 12 12 C 1.54102 * 103.98842 * 180.02562 * 11 10 9 13 13 N 1.47047 * 103.86597 * 359.92478 * 12 11 10 14 14 C 1.46495 * 125.41333 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47348 * 90.00407 * 14 13 12 16 16 C 1.38233 * 119.99649 * 269.72940 * 15 14 13 17 17 C 1.38239 * 119.99625 * 179.75850 * 16 15 14 18 18 C 1.38235 * 119.99983 * 0.51197 * 17 16 15 19 19 C 1.38237 * 119.99971 * 359.74576 * 18 17 16 20 20 C 1.38228 * 119.99913 * 89.99752 * 15 14 13 21 21 C 1.33956 * 109.18037 * 0.02562 * 13 12 11 22 22 O 1.21585 * 123.04187 * 179.97438 * 21 13 12 23 23 H 0.97003 * 119.99865 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46669 * 59.99586 * 9 7 2 25 25 H 1.08994 * 109.46641 * 300.00018 * 9 7 2 26 26 H 1.09002 * 110.54996 * 61.39999 * 11 10 9 27 27 H 1.08997 * 110.55013 * 298.73283 * 11 10 9 28 28 H 1.09001 * 110.55154 * 118.52658 * 12 11 10 29 29 H 1.09000 * 110.54868 * 241.18676 * 12 11 10 30 30 H 1.09008 * 109.47393 * 210.00511 * 14 13 12 31 31 H 1.09003 * 109.47621 * 330.00284 * 14 13 12 32 32 H 1.08000 * 120.00378 * 359.97438 * 16 15 14 33 33 H 1.08002 * 119.99739 * 180.22684 * 17 16 15 34 34 H 1.07994 * 119.99836 * 179.71634 * 18 17 16 35 35 H 1.07999 * 119.99768 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00366 * 0.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4993 0.0005 10 7 2.2028 -3.6127 0.0005 11 6 2.7565 -4.2604 1.1992 12 6 3.6892 -5.3504 0.6365 13 7 3.5625 -5.2045 -0.8212 14 6 4.2595 -6.0190 -1.8197 15 6 3.4197 -7.2229 -2.1609 16 6 3.5701 -8.3958 -1.4450 17 6 2.7962 -9.4986 -1.7548 18 6 1.8795 -9.4318 -2.7873 19 6 1.7330 -8.2605 -3.5067 20 6 2.5030 -7.1560 -3.1934 21 6 2.7093 -4.2077 -1.0913 22 8 2.4202 -3.8709 -2.2232 23 1 -0.4850 0.8401 0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 1.9606 -4.7085 1.7941 27 1 3.3209 -3.5434 1.7953 28 1 4.7178 -5.1734 0.9508 29 1 3.3579 -6.3389 0.9545 30 1 4.4274 -5.4264 -2.7191 31 1 5.2177 -6.3469 -1.4165 32 1 4.2896 -8.4496 -0.6414 33 1 2.9111 -10.4139 -1.1930 34 1 1.2783 -10.2948 -3.0322 35 1 1.0171 -8.2084 -4.3136 36 1 2.3889 -6.2411 -3.7558 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:06 Heat of formation + Delta-G solvation = -6.673239 kcal Electronic energy + Delta-G solvation = -19057.209579 eV Core-core repulsion = 16119.869624 eV Total energy + Delta-G solvation = -2937.339955 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84631 -39.97217 -37.21917 -36.31506 -34.75475 -32.65942 -31.76407 -30.27582 -28.89982 -27.14576 -25.06799 -23.68495 -23.22443 -22.25163 -20.55742 -18.78779 -18.08082 -17.60280 -17.22411 -16.88686 -16.39362 -16.01725 -15.95732 -15.13263 -14.89394 -14.64902 -14.55290 -14.25694 -14.09405 -13.47761 -13.43233 -13.25691 -13.01572 -12.81724 -12.72875 -12.55707 -12.20442 -12.07578 -11.83943 -11.68937 -11.10073 -10.66823 -9.97018 -9.80246 -9.71534 -9.15748 -8.23688 -6.40383 0.35685 0.51839 1.36165 1.38851 1.50784 1.74515 2.25207 2.39732 2.88759 3.04340 3.19869 3.68920 3.81798 3.88203 4.16878 4.17730 4.23144 4.31920 4.50220 4.59085 4.65178 4.72955 4.77740 4.85202 5.01871 5.10335 5.11275 5.17314 5.44222 5.56930 5.59493 5.62798 5.74344 5.88784 5.99502 6.07336 6.14162 6.69144 6.88300 7.27791 7.73768 8.82472 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.004626 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.376536 B = 6051.588243 C = 6282.108526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.294 3.706 10 N -0.631 5.631 11 C 0.085 3.915 12 C 0.104 3.896 13 N -0.630 5.630 14 C 0.190 3.810 15 C -0.119 4.119 16 C -0.102 4.102 17 C -0.125 4.125 18 C -0.121 4.121 19 C -0.139 4.139 20 C -0.124 4.124 21 C 0.680 3.320 22 O -0.645 6.645 23 H 0.269 0.731 24 H -0.007 1.007 25 H 0.031 0.969 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.125 0.875 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 -20.044 2.504 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.173 3.827 10 N -0.367 5.367 11 C -0.037 4.037 12 C -0.018 4.018 13 N -0.368 5.368 14 C 0.069 3.931 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.157 4.157 20 C -0.143 4.143 21 C 0.382 3.618 22 O -0.527 6.527 23 H 0.078 0.922 24 H 0.011 0.989 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.343 -19.710 1.887 21.894 hybrid contribution -0.322 1.394 -0.481 1.510 sum 9.021 -18.316 1.406 20.465 Atomic orbital electron populations 1.70054 1.07572 1.28303 1.50825 1.25877 0.95841 1.03088 0.94208 0.85305 0.78627 0.78353 0.78117 1.19266 1.20671 1.19056 1.21756 0.93309 0.91930 1.51570 0.93006 1.18511 0.86436 0.82060 0.95647 1.47662 1.47137 1.35593 1.06320 1.22566 0.97649 0.94882 0.88635 1.22591 1.01423 0.99616 0.78182 1.47277 1.46919 1.34571 1.08065 1.20197 0.93976 0.87928 0.91025 1.20402 0.98729 0.96323 0.96627 1.21353 0.99892 0.91622 0.99123 1.21541 0.95728 0.99486 0.97544 1.21501 0.98799 0.97771 0.95871 1.21358 0.99689 0.93647 1.01012 1.21219 0.96731 0.98091 0.98263 1.16407 0.80135 0.80676 0.84560 1.90783 1.67620 1.70818 1.23500 0.92218 0.98874 0.95120 0.89354 0.89863 0.87227 0.87599 0.91872 0.85288 0.82928 0.82879 0.83748 0.85658 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -32.61 9.39 25.60 0.24 -32.37 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.29 16.68 5.76 85.64 0.49 17.18 16 10 N -0.63 -29.42 2.95 -842.24 -2.48 -31.90 16 11 C 0.09 2.67 7.67 86.64 0.66 3.34 16 12 C 0.10 2.38 7.68 86.65 0.67 3.05 16 13 N -0.63 -20.67 2.94 -842.43 -2.48 -23.15 16 14 C 0.19 5.05 6.12 85.64 0.52 5.57 16 15 C -0.12 -3.11 5.46 -19.87 -0.11 -3.22 16 16 C -0.10 -1.91 9.70 22.27 0.22 -1.70 16 17 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 18 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 19 C -0.14 -3.55 10.05 22.27 0.22 -3.33 16 20 C -0.12 -3.83 9.70 22.27 0.22 -3.61 16 21 C 0.68 31.94 8.30 179.47 1.49 33.43 16 22 O -0.64 -36.93 17.04 -3.98 -0.07 -37.00 16 23 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.45 7.93 -2.39 -0.02 -0.46 16 25 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.00 7.86 -2.38 -0.02 1.98 16 31 H 0.13 2.19 8.08 -2.39 -0.02 2.17 16 32 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.09 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -81.48 313.45 3.88 -77.60 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.06 Total: 8.15 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 5.54 Total: 15.22 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -4.67 Total: -111.59 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.07 Total: -37.00 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -81.48 3.88 -77.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.927 kcal (2) G-P(sol) polarization free energy of solvation -81.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds