Wall clock time and date at job start Mon Mar 30 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46937 * 2 1 4 4 C 1.53002 * 109.47119 * 119.99773 * 2 1 3 5 5 H 1.09004 * 109.46779 * 53.21835 * 4 2 1 6 6 C 1.50694 * 109.47288 * 293.21975 * 4 2 1 7 7 H 1.08001 * 119.99731 * 245.92147 * 6 4 2 8 8 C 1.37870 * 120.00381 * 66.19470 * 6 4 2 9 9 N 1.31521 * 119.99878 * 24.01340 * 8 6 4 10 10 Si 1.86802 * 120.00199 * 204.01449 * 8 6 4 11 11 H 1.48494 * 109.47172 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47271 * 119.99963 * 10 8 6 13 13 H 1.48495 * 109.47119 * 239.99989 * 10 8 6 14 14 C 1.53004 * 109.46935 * 173.21334 * 4 2 1 15 15 H 1.08999 * 109.38311 * 55.45303 * 14 4 2 16 16 C 1.52590 * 109.38667 * 295.66235 * 14 4 2 17 17 C 1.52584 * 110.63922 * 169.85729 * 16 14 4 18 18 C 1.53035 * 109.99023 * 69.98599 * 17 16 14 19 19 S 1.81667 * 108.99655 * 296.34904 * 18 17 16 20 20 O 1.42105 * 108.66366 * 168.62561 * 19 18 17 21 21 O 1.42097 * 108.66633 * 299.87198 * 19 18 17 22 22 C 1.53039 * 109.38248 * 175.13432 * 14 4 2 23 23 H 1.09002 * 109.46916 * 306.98534 * 1 2 3 24 24 H 1.08994 * 109.47258 * 66.98581 * 1 2 3 25 25 H 1.09004 * 109.46848 * 186.99077 * 1 2 3 26 26 H 1.09000 * 109.46739 * 239.99972 * 2 1 3 27 27 H 1.09000 * 109.47206 * 185.33078 * 3 2 1 28 28 H 1.08996 * 109.47300 * 305.32609 * 3 2 1 29 29 H 1.09001 * 109.47306 * 65.33298 * 3 2 1 30 30 H 0.96998 * 119.99962 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.23897 * 290.15218 * 16 14 4 32 32 H 1.08992 * 109.24140 * 49.55619 * 16 14 4 33 33 H 1.09001 * 109.38461 * 190.14095 * 17 16 14 34 34 H 1.09007 * 109.38593 * 309.82504 * 17 16 14 35 35 H 1.09001 * 109.55154 * 56.20437 * 18 17 16 36 36 H 1.08995 * 109.55112 * 176.40060 * 18 17 16 37 37 H 1.09003 * 109.54752 * 303.66342 * 22 14 4 38 38 H 1.09000 * 109.55148 * 63.95516 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5809 -1.7079 1.3120 6 6 1.6794 0.0794 2.4740 7 1 2.4572 0.5262 3.0754 8 6 0.3567 0.2369 2.8298 9 7 -0.5392 -0.6419 2.4364 10 14 -0.1628 1.6984 3.8707 11 1 1.0256 2.5332 4.1802 12 1 -1.1572 2.5097 3.1236 13 1 -0.7699 1.2139 5.1364 14 6 3.5605 -0.8705 1.1669 15 1 4.0131 0.1106 1.0230 16 6 3.9179 -1.7711 -0.0119 17 6 5.4205 -1.7407 -0.2757 18 6 6.1646 -2.4562 0.8540 19 16 5.8964 -1.5500 2.4056 20 8 6.3596 -2.3497 3.4851 21 8 6.3980 -0.2292 2.2534 22 6 4.0821 -1.4819 2.4693 23 1 -0.3633 0.6183 0.8209 24 1 -0.3633 0.4017 -0.9458 25 1 -0.3633 -1.0201 0.1251 26 1 1.8933 -0.5138 -0.8900 27 1 3.1258 1.4440 -0.0955 28 1 1.6008 1.9831 -0.8384 29 1 1.7567 1.9280 0.9339 30 1 -1.4698 -0.5310 2.6865 31 1 3.6131 -2.7934 0.2118 32 1 3.3900 -1.4257 -0.9007 33 1 5.6319 -2.2401 -1.2212 34 1 5.7571 -0.7054 -0.3319 35 1 5.7843 -3.4727 0.9549 36 1 7.2303 -2.4863 0.6271 37 1 3.7696 -0.8656 3.3124 38 1 3.6831 -2.4897 2.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260328559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:12 Heat of formation + Delta-G solvation = -85.423107 kcal Electronic energy + Delta-G solvation = -19226.772730 eV Core-core repulsion = 16389.169124 eV Total energy + Delta-G solvation = -2837.603606 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.20023 -36.60204 -35.66923 -35.04732 -31.91842 -31.49260 -27.38170 -26.88338 -25.83727 -24.04941 -21.66025 -20.41079 -18.59830 -18.35431 -16.36814 -16.17526 -15.96098 -15.33335 -14.70489 -14.49455 -14.02559 -13.79477 -13.19523 -12.86273 -12.75458 -12.47642 -12.13063 -11.79150 -11.67295 -11.53177 -11.29110 -11.21980 -11.03710 -10.90051 -10.71013 -10.63817 -10.46346 -10.31816 -10.04668 -9.97003 -9.69835 -9.29125 -8.96521 -8.82724 -7.88729 -6.15623 -3.99893 0.41286 3.04318 3.24883 3.36405 3.41585 3.98609 4.24872 4.39084 4.77300 4.86490 5.11667 5.17903 5.24302 5.36566 5.56514 5.68787 5.84257 5.99101 6.13162 6.15099 6.26102 6.29475 6.39309 6.63196 6.64908 6.74828 6.83934 6.92381 7.23813 7.26909 7.46020 7.50963 7.80809 7.87686 7.94634 8.36949 8.93602 9.52699 10.91780 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.007796 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.280064 B = 3590.718790 C = 4163.408989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 C -0.136 4.136 4 C 0.061 3.939 5 H 0.041 0.959 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.078 3.922 9 N -0.863 5.863 10 Si 0.860 3.140 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.287 1.287 14 C -0.070 4.070 15 H 0.081 0.919 16 C -0.142 4.142 17 C -0.108 4.108 18 C -0.606 4.606 19 S 2.395 3.605 20 O -0.961 6.961 21 O -0.946 6.946 22 C -0.562 4.562 23 H 0.075 0.925 24 H -0.001 1.001 25 H 0.055 0.945 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.260 0.740 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.647 -3.159 -5.807 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C -0.193 4.193 4 C 0.041 3.959 5 H 0.060 0.940 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.125 4.125 9 N -0.500 5.500 10 Si 0.687 3.313 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.213 1.213 14 C -0.090 4.090 15 H 0.099 0.901 16 C -0.179 4.179 17 C -0.146 4.146 18 C -0.734 4.734 19 S 2.580 3.420 20 O -0.958 6.958 21 O -0.944 6.944 22 C -0.694 4.694 23 H 0.094 0.906 24 H 0.018 0.982 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.166 0.834 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.146 -2.893 -5.184 10.080 hybrid contribution -0.943 0.387 0.066 1.021 sum 7.203 -2.506 -5.118 9.185 Atomic orbital electron populations 1.22013 0.95206 1.02706 0.97979 1.21274 0.96227 0.95267 0.97346 1.21810 0.98883 0.97702 1.00955 1.18785 0.86558 0.97242 0.93314 0.94049 1.20943 0.91728 1.32802 1.10180 0.92378 1.24753 0.97018 0.95491 0.95267 1.70224 1.02584 1.31899 1.45315 0.87059 0.79033 0.84830 0.80338 1.19466 1.20767 1.21334 1.21041 1.02189 0.97513 0.88210 0.90126 1.21932 0.93870 1.01226 1.00866 1.21291 0.95571 1.00828 0.96885 1.30229 1.09168 1.13744 1.20295 1.08593 0.80452 0.75973 0.76952 1.93539 1.80360 1.71180 1.50767 1.93546 1.78800 1.35669 1.86342 1.30125 1.19380 1.10948 1.08958 0.90610 0.98202 0.92568 0.94960 0.94378 0.95682 0.91300 0.93036 0.91331 0.89605 0.90528 0.90176 0.85400 0.85948 0.83430 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 7.52 37.16 0.28 -2.39 16 2 C -0.08 -1.66 2.57 -90.62 -0.23 -1.90 16 3 C -0.14 -2.64 8.63 37.16 0.32 -2.32 16 4 C 0.06 1.28 1.29 -91.77 -0.12 1.16 16 5 H 0.04 0.97 7.96 -51.93 -0.41 0.56 16 6 C -0.52 -12.49 5.78 -34.45 -0.20 -12.69 16 7 H 0.06 1.41 6.74 -52.49 -0.35 1.06 16 8 C 0.08 1.95 3.48 -17.82 -0.06 1.88 16 9 N -0.86 -22.27 10.12 55.43 0.56 -21.71 16 10 Si 0.86 19.87 29.60 -169.99 -5.03 14.84 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 C -0.07 -1.21 1.46 -90.81 -0.13 -1.34 16 15 H 0.08 1.43 6.41 -51.93 -0.33 1.10 16 16 C -0.14 -1.95 4.87 -27.15 -0.13 -2.08 16 17 C -0.11 -1.25 5.73 -26.93 -0.15 -1.40 16 18 C -0.61 -6.76 6.35 37.18 0.24 -6.53 16 19 S 2.39 35.78 5.30 -107.50 -0.57 35.21 16 20 O -0.96 -17.11 18.10 -57.82 -1.05 -18.16 16 21 O -0.95 -17.15 17.95 -57.82 -1.04 -18.19 16 22 C -0.56 -9.11 5.37 37.18 0.20 -8.91 16 23 H 0.08 1.83 5.06 -51.93 -0.26 1.57 16 24 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.06 1.30 7.45 -51.93 -0.39 0.91 16 26 H 0.03 0.59 6.06 -51.93 -0.31 0.28 16 27 H 0.04 0.67 6.78 -51.93 -0.35 0.32 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.47 6.82 -51.93 -0.35 1.11 16 30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.09 1.18 5.97 -51.93 -0.31 0.87 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 35 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.15 2.63 6.32 -51.93 -0.33 2.30 16 38 H 0.13 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 294.28 15.07 4.43 4.43 Total: -1.00 -29.76 294.28 -8.60 -38.36 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.92 Total: 1.72 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 0.00 Total: -36.51 kcal Atomic # 7 Polarization: -22.27 SS G_CDS: 0.56 Total: -21.71 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -2.08 Total: -36.35 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Atomic # 16 Polarization: 35.78 SS G_CDS: -0.57 Total: 35.21 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.76 -8.60 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.061 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds