Wall clock time and date at job start Mon Mar 30 2020 04:58:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52997 * 109.46937 * 2 1
4 4 C 1.53002 * 109.47119 * 119.99773 * 2 1 3
5 5 H 1.09004 * 109.46779 * 53.21835 * 4 2 1
6 6 C 1.50694 * 109.47288 * 293.21975 * 4 2 1
7 7 H 1.08001 * 119.99731 * 245.92147 * 6 4 2
8 8 C 1.37870 * 120.00381 * 66.19470 * 6 4 2
9 9 N 1.31521 * 119.99878 * 24.01340 * 8 6 4
10 10 Si 1.86802 * 120.00199 * 204.01449 * 8 6 4
11 11 H 1.48494 * 109.47172 * 359.97438 * 10 8 6
12 12 H 1.48498 * 109.47271 * 119.99963 * 10 8 6
13 13 H 1.48495 * 109.47119 * 239.99989 * 10 8 6
14 14 C 1.53004 * 109.46935 * 173.21334 * 4 2 1
15 15 H 1.08999 * 109.38311 * 55.45303 * 14 4 2
16 16 C 1.52590 * 109.38667 * 295.66235 * 14 4 2
17 17 C 1.52584 * 110.63922 * 169.85729 * 16 14 4
18 18 C 1.53035 * 109.99023 * 69.98599 * 17 16 14
19 19 S 1.81667 * 108.99655 * 296.34904 * 18 17 16
20 20 O 1.42105 * 108.66366 * 168.62561 * 19 18 17
21 21 O 1.42097 * 108.66633 * 299.87198 * 19 18 17
22 22 C 1.53039 * 109.38248 * 175.13432 * 14 4 2
23 23 H 1.09002 * 109.46916 * 306.98534 * 1 2 3
24 24 H 1.08994 * 109.47258 * 66.98581 * 1 2 3
25 25 H 1.09004 * 109.46848 * 186.99077 * 1 2 3
26 26 H 1.09000 * 109.46739 * 239.99972 * 2 1 3
27 27 H 1.09000 * 109.47206 * 185.33078 * 3 2 1
28 28 H 1.08996 * 109.47300 * 305.32609 * 3 2 1
29 29 H 1.09001 * 109.47306 * 65.33298 * 3 2 1
30 30 H 0.96998 * 119.99962 * 180.02562 * 9 8 6
31 31 H 1.08997 * 109.23897 * 290.15218 * 16 14 4
32 32 H 1.08992 * 109.24140 * 49.55619 * 16 14 4
33 33 H 1.09001 * 109.38461 * 190.14095 * 17 16 14
34 34 H 1.09007 * 109.38593 * 309.82504 * 17 16 14
35 35 H 1.09001 * 109.55154 * 56.20437 * 18 17 16
36 36 H 1.08995 * 109.55112 * 176.40060 * 18 17 16
37 37 H 1.09003 * 109.54752 * 303.66342 * 22 14 4
38 38 H 1.09000 * 109.55148 * 63.95516 * 22 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 1.5809 -1.7079 1.3120
6 6 1.6794 0.0794 2.4740
7 1 2.4572 0.5262 3.0754
8 6 0.3567 0.2369 2.8298
9 7 -0.5392 -0.6419 2.4364
10 14 -0.1628 1.6984 3.8707
11 1 1.0256 2.5332 4.1802
12 1 -1.1572 2.5097 3.1236
13 1 -0.7699 1.2139 5.1364
14 6 3.5605 -0.8705 1.1669
15 1 4.0131 0.1106 1.0230
16 6 3.9179 -1.7711 -0.0119
17 6 5.4205 -1.7407 -0.2757
18 6 6.1646 -2.4562 0.8540
19 16 5.8964 -1.5500 2.4056
20 8 6.3596 -2.3497 3.4851
21 8 6.3980 -0.2292 2.2534
22 6 4.0821 -1.4819 2.4693
23 1 -0.3633 0.6183 0.8209
24 1 -0.3633 0.4017 -0.9458
25 1 -0.3633 -1.0201 0.1251
26 1 1.8933 -0.5138 -0.8900
27 1 3.1258 1.4440 -0.0955
28 1 1.6008 1.9831 -0.8384
29 1 1.7567 1.9280 0.9339
30 1 -1.4698 -0.5310 2.6865
31 1 3.6131 -2.7934 0.2118
32 1 3.3900 -1.4257 -0.9007
33 1 5.6319 -2.2401 -1.2212
34 1 5.7571 -0.7054 -0.3319
35 1 5.7843 -3.4727 0.9549
36 1 7.2303 -2.4863 0.6271
37 1 3.7696 -0.8656 3.3124
38 1 3.6831 -2.4897 2.5847
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260328559.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:58:12
Heat of formation + Delta-G solvation = -85.423107 kcal
Electronic energy + Delta-G solvation = -19226.772730 eV
Core-core repulsion = 16389.169124 eV
Total energy + Delta-G solvation = -2837.603606 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.123 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-38.20023 -36.60204 -35.66923 -35.04732 -31.91842 -31.49260 -27.38170 -26.88338
-25.83727 -24.04941 -21.66025 -20.41079 -18.59830 -18.35431 -16.36814 -16.17526
-15.96098 -15.33335 -14.70489 -14.49455 -14.02559 -13.79477 -13.19523 -12.86273
-12.75458 -12.47642 -12.13063 -11.79150 -11.67295 -11.53177 -11.29110 -11.21980
-11.03710 -10.90051 -10.71013 -10.63817 -10.46346 -10.31816 -10.04668 -9.97003
-9.69835 -9.29125 -8.96521 -8.82724 -7.88729 -6.15623 -3.99893 0.41286
3.04318 3.24883 3.36405 3.41585 3.98609 4.24872 4.39084 4.77300
4.86490 5.11667 5.17903 5.24302 5.36566 5.56514 5.68787 5.84257
5.99101 6.13162 6.15099 6.26102 6.29475 6.39309 6.63196 6.64908
6.74828 6.83934 6.92381 7.23813 7.26909 7.46020 7.50963 7.80809
7.87686 7.94634 8.36949 8.93602 9.52699 10.91780
Molecular weight = 260.12amu
Principal moments of inertia in cm(-1)
A = 0.024593 B = 0.007796 C = 0.006724
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.280064 B = 3590.718790 C = 4163.408989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.082 4.082
3 C -0.136 4.136
4 C 0.061 3.939
5 H 0.041 0.959
6 C -0.519 4.519
7 H 0.058 0.942
8 C 0.078 3.922
9 N -0.863 5.863
10 Si 0.860 3.140
11 H -0.270 1.270
12 H -0.282 1.282
13 H -0.287 1.287
14 C -0.070 4.070
15 H 0.081 0.919
16 C -0.142 4.142
17 C -0.108 4.108
18 C -0.606 4.606
19 S 2.395 3.605
20 O -0.961 6.961
21 O -0.946 6.946
22 C -0.562 4.562
23 H 0.075 0.925
24 H -0.001 1.001
25 H 0.055 0.945
26 H 0.032 0.968
27 H 0.037 0.963
28 H 0.024 0.976
29 H 0.068 0.932
30 H 0.260 0.740
31 H 0.068 0.932
32 H 0.086 0.914
33 H 0.076 0.924
34 H 0.080 0.920
35 H 0.128 0.872
36 H 0.122 0.878
37 H 0.148 0.852
38 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.647 -3.159 -5.807 10.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.101 4.101
3 C -0.193 4.193
4 C 0.041 3.959
5 H 0.060 0.940
6 C -0.557 4.557
7 H 0.076 0.924
8 C -0.125 4.125
9 N -0.500 5.500
10 Si 0.687 3.313
11 H -0.195 1.195
12 H -0.208 1.208
13 H -0.213 1.213
14 C -0.090 4.090
15 H 0.099 0.901
16 C -0.179 4.179
17 C -0.146 4.146
18 C -0.734 4.734
19 S 2.580 3.420
20 O -0.958 6.958
21 O -0.944 6.944
22 C -0.694 4.694
23 H 0.094 0.906
24 H 0.018 0.982
25 H 0.074 0.926
26 H 0.050 0.950
27 H 0.056 0.944
28 H 0.043 0.957
29 H 0.087 0.913
30 H 0.070 0.930
31 H 0.087 0.913
32 H 0.104 0.896
33 H 0.095 0.905
34 H 0.098 0.902
35 H 0.146 0.854
36 H 0.141 0.859
37 H 0.166 0.834
38 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 8.146 -2.893 -5.184 10.080
hybrid contribution -0.943 0.387 0.066 1.021
sum 7.203 -2.506 -5.118 9.185
Atomic orbital electron populations
1.22013 0.95206 1.02706 0.97979 1.21274 0.96227 0.95267 0.97346
1.21810 0.98883 0.97702 1.00955 1.18785 0.86558 0.97242 0.93314
0.94049 1.20943 0.91728 1.32802 1.10180 0.92378 1.24753 0.97018
0.95491 0.95267 1.70224 1.02584 1.31899 1.45315 0.87059 0.79033
0.84830 0.80338 1.19466 1.20767 1.21334 1.21041 1.02189 0.97513
0.88210 0.90126 1.21932 0.93870 1.01226 1.00866 1.21291 0.95571
1.00828 0.96885 1.30229 1.09168 1.13744 1.20295 1.08593 0.80452
0.75973 0.76952 1.93539 1.80360 1.71180 1.50767 1.93546 1.78800
1.35669 1.86342 1.30125 1.19380 1.10948 1.08958 0.90610 0.98202
0.92568 0.94960 0.94378 0.95682 0.91300 0.93036 0.91331 0.89605
0.90528 0.90176 0.85400 0.85948 0.83430 0.85553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.67 7.52 37.16 0.28 -2.39 16
2 C -0.08 -1.66 2.57 -90.62 -0.23 -1.90 16
3 C -0.14 -2.64 8.63 37.16 0.32 -2.32 16
4 C 0.06 1.28 1.29 -91.77 -0.12 1.16 16
5 H 0.04 0.97 7.96 -51.93 -0.41 0.56 16
6 C -0.52 -12.49 5.78 -34.45 -0.20 -12.69 16
7 H 0.06 1.41 6.74 -52.49 -0.35 1.06 16
8 C 0.08 1.95 3.48 -17.82 -0.06 1.88 16
9 N -0.86 -22.27 10.12 55.43 0.56 -21.71 16
10 Si 0.86 19.87 29.60 -169.99 -5.03 14.84 16
11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16
12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
14 C -0.07 -1.21 1.46 -90.81 -0.13 -1.34 16
15 H 0.08 1.43 6.41 -51.93 -0.33 1.10 16
16 C -0.14 -1.95 4.87 -27.15 -0.13 -2.08 16
17 C -0.11 -1.25 5.73 -26.93 -0.15 -1.40 16
18 C -0.61 -6.76 6.35 37.18 0.24 -6.53 16
19 S 2.39 35.78 5.30 -107.50 -0.57 35.21 16
20 O -0.96 -17.11 18.10 -57.82 -1.05 -18.16 16
21 O -0.95 -17.15 17.95 -57.82 -1.04 -18.19 16
22 C -0.56 -9.11 5.37 37.18 0.20 -8.91 16
23 H 0.08 1.83 5.06 -51.93 -0.26 1.57 16
24 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16
25 H 0.06 1.30 7.45 -51.93 -0.39 0.91 16
26 H 0.03 0.59 6.06 -51.93 -0.31 0.28 16
27 H 0.04 0.67 6.78 -51.93 -0.35 0.32 16
28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
29 H 0.07 1.47 6.82 -51.93 -0.35 1.11 16
30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16
31 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16
32 H 0.09 1.18 5.97 -51.93 -0.31 0.87 16
33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16
35 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16
36 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16
37 H 0.15 2.63 6.32 -51.93 -0.33 2.30 16
38 H 0.13 1.85 8.14 -51.93 -0.42 1.42 16
LS Contribution 294.28 15.07 4.43 4.43
Total: -1.00 -29.76 294.28 -8.60 -38.36
By element:
Atomic # 1 Polarization: 7.64 SS G_CDS: -5.92 Total: 1.72 kcal
Atomic # 6 Polarization: -36.51 SS G_CDS: 0.00 Total: -36.51 kcal
Atomic # 7 Polarization: -22.27 SS G_CDS: 0.56 Total: -21.71 kcal
Atomic # 8 Polarization: -34.26 SS G_CDS: -2.08 Total: -36.35 kcal
Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal
Atomic # 16 Polarization: 35.78 SS G_CDS: -0.57 Total: 35.21 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -29.76 -8.60 -38.36 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260328559.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.061 kcal
(2) G-P(sol) polarization free energy of solvation -29.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.820 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.423 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds