Wall clock time and date at job start Mon Mar 30 2020 04:58:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52997 * 109.46937 * 2 1
4 4 C 1.53002 * 109.47119 * 119.99773 * 2 1 3
5 5 H 1.09004 * 109.46779 * 53.21835 * 4 2 1
6 6 C 1.50694 * 109.47288 * 293.21975 * 4 2 1
7 7 H 1.08001 * 119.99731 * 245.92147 * 6 4 2
8 8 C 1.37870 * 120.00381 * 66.19470 * 6 4 2
9 9 N 1.31521 * 119.99878 * 24.01340 * 8 6 4
10 10 Si 1.86802 * 120.00199 * 204.01449 * 8 6 4
11 11 H 1.48494 * 109.47172 * 359.97438 * 10 8 6
12 12 H 1.48498 * 109.47271 * 119.99963 * 10 8 6
13 13 H 1.48495 * 109.47119 * 239.99989 * 10 8 6
14 14 C 1.53004 * 109.46935 * 173.21334 * 4 2 1
15 15 H 1.08999 * 109.38311 * 55.45303 * 14 4 2
16 16 C 1.52590 * 109.38667 * 295.66235 * 14 4 2
17 17 C 1.52584 * 110.63922 * 169.85729 * 16 14 4
18 18 C 1.53035 * 109.99023 * 69.98599 * 17 16 14
19 19 S 1.81667 * 108.99655 * 296.34904 * 18 17 16
20 20 O 1.42105 * 108.66366 * 168.62561 * 19 18 17
21 21 O 1.42097 * 108.66633 * 299.87198 * 19 18 17
22 22 C 1.53039 * 109.38248 * 175.13432 * 14 4 2
23 23 H 1.09002 * 109.46916 * 306.98534 * 1 2 3
24 24 H 1.08994 * 109.47258 * 66.98581 * 1 2 3
25 25 H 1.09004 * 109.46848 * 186.99077 * 1 2 3
26 26 H 1.09000 * 109.46739 * 239.99972 * 2 1 3
27 27 H 1.09000 * 109.47206 * 185.33078 * 3 2 1
28 28 H 1.08996 * 109.47300 * 305.32609 * 3 2 1
29 29 H 1.09001 * 109.47306 * 65.33298 * 3 2 1
30 30 H 0.96998 * 119.99962 * 180.02562 * 9 8 6
31 31 H 1.08997 * 109.23897 * 290.15218 * 16 14 4
32 32 H 1.08992 * 109.24140 * 49.55619 * 16 14 4
33 33 H 1.09001 * 109.38461 * 190.14095 * 17 16 14
34 34 H 1.09007 * 109.38593 * 309.82504 * 17 16 14
35 35 H 1.09001 * 109.55154 * 56.20437 * 18 17 16
36 36 H 1.08995 * 109.55112 * 176.40060 * 18 17 16
37 37 H 1.09003 * 109.54752 * 303.66342 * 22 14 4
38 38 H 1.09000 * 109.55148 * 63.95516 * 22 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 1.5809 -1.7079 1.3120
6 6 1.6794 0.0794 2.4740
7 1 2.4572 0.5262 3.0754
8 6 0.3567 0.2369 2.8298
9 7 -0.5392 -0.6419 2.4364
10 14 -0.1628 1.6984 3.8707
11 1 1.0256 2.5332 4.1802
12 1 -1.1572 2.5097 3.1236
13 1 -0.7699 1.2139 5.1364
14 6 3.5605 -0.8705 1.1669
15 1 4.0131 0.1106 1.0230
16 6 3.9179 -1.7711 -0.0119
17 6 5.4205 -1.7407 -0.2757
18 6 6.1646 -2.4562 0.8540
19 16 5.8964 -1.5500 2.4056
20 8 6.3596 -2.3497 3.4851
21 8 6.3980 -0.2292 2.2534
22 6 4.0821 -1.4819 2.4693
23 1 -0.3633 0.6183 0.8209
24 1 -0.3633 0.4017 -0.9458
25 1 -0.3633 -1.0201 0.1251
26 1 1.8933 -0.5138 -0.8900
27 1 3.1258 1.4440 -0.0955
28 1 1.6008 1.9831 -0.8384
29 1 1.7567 1.9280 0.9339
30 1 -1.4698 -0.5310 2.6865
31 1 3.6131 -2.7934 0.2118
32 1 3.3900 -1.4257 -0.9007
33 1 5.6319 -2.2401 -1.2212
34 1 5.7571 -0.7054 -0.3319
35 1 5.7843 -3.4727 0.9549
36 1 7.2303 -2.4863 0.6271
37 1 3.7696 -0.8656 3.3124
38 1 3.6831 -2.4897 2.5847
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260328559.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:58:12
Heat of formation + Delta-G solvation = -104.848124 kcal
Electronic energy + Delta-G solvation = -19227.615062 eV
Core-core repulsion = 16389.169124 eV
Total energy + Delta-G solvation = -2838.445938 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.123 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.60780 -37.93277 -36.97760 -36.41116 -33.66733 -32.84132 -28.59376 -28.49346
-27.48507 -25.59960 -22.92620 -21.78097 -20.08047 -19.65481 -18.00188 -17.58274
-17.18786 -16.60903 -16.35934 -15.85602 -15.57617 -15.04107 -14.47156 -14.42979
-14.07814 -13.79621 -13.66645 -13.14451 -13.06378 -13.01044 -12.93310 -12.69326
-12.48195 -12.44741 -12.22768 -12.17567 -11.78371 -11.75411 -11.70233 -11.35740
-11.27823 -10.88302 -10.61097 -10.31265 -9.77779 -8.09909 -5.94871 -0.76426
1.34732 1.43861 1.50654 1.89524 2.47380 2.83156 3.12271 3.20279
3.83686 3.87277 3.99159 4.05431 4.28819 4.44191 4.59626 4.64684
4.69278 4.76617 4.83123 4.97931 5.06006 5.12367 5.18092 5.27891
5.28390 5.45569 5.49516 5.55355 5.64643 5.70019 5.84073 6.01857
6.09718 6.17894 6.53482 7.05605 7.58186 8.96970
Molecular weight = 260.12amu
Principal moments of inertia in cm(-1)
A = 0.024593 B = 0.007796 C = 0.006724
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.280064 B = 3590.718790 C = 4163.408989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.083 4.083
3 C -0.132 4.132
4 C 0.060 3.940
5 H 0.015 0.985
6 C -0.519 4.519
7 H 0.046 0.954
8 C 0.045 3.955
9 N -0.884 5.884
10 Si 0.897 3.103
11 H -0.273 1.273
12 H -0.282 1.282
13 H -0.291 1.291
14 C -0.069 4.069
15 H 0.072 0.928
16 C -0.140 4.140
17 C -0.108 4.108
18 C -0.576 4.576
19 S 2.406 3.594
20 O -0.994 6.994
21 O -0.983 6.983
22 C -0.575 4.575
23 H 0.048 0.952
24 H 0.017 0.983
25 H 0.037 0.963
26 H 0.060 0.940
27 H 0.054 0.946
28 H 0.041 0.959
29 H 0.040 0.960
30 H 0.257 0.743
31 H 0.081 0.919
32 H 0.090 0.910
33 H 0.114 0.886
34 H 0.078 0.922
35 H 0.158 0.842
36 H 0.154 0.846
37 H 0.119 0.881
38 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.363 -4.127 -8.086 13.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.102 4.102
3 C -0.190 4.190
4 C 0.040 3.960
5 H 0.033 0.967
6 C -0.557 4.557
7 H 0.064 0.936
8 C -0.156 4.156
9 N -0.523 5.523
10 Si 0.725 3.275
11 H -0.198 1.198
12 H -0.208 1.208
13 H -0.218 1.218
14 C -0.089 4.089
15 H 0.091 0.909
16 C -0.178 4.178
17 C -0.146 4.146
18 C -0.709 4.709
19 S 2.595 3.405
20 O -0.991 6.991
21 O -0.981 6.981
22 C -0.705 4.705
23 H 0.067 0.933
24 H 0.036 0.964
25 H 0.056 0.944
26 H 0.079 0.921
27 H 0.073 0.927
28 H 0.060 0.940
29 H 0.059 0.941
30 H 0.066 0.934
31 H 0.100 0.900
32 H 0.108 0.892
33 H 0.132 0.868
34 H 0.096 0.904
35 H 0.176 0.824
36 H 0.172 0.828
37 H 0.137 0.863
38 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 9.840 -3.822 -7.413 12.899
hybrid contribution -1.456 0.661 0.745 1.764
sum 8.384 -3.161 -6.669 11.169
Atomic orbital electron populations
1.21880 0.96634 1.00994 0.97789 1.21259 0.94983 0.96043 0.97884
1.21743 1.00060 0.96952 1.00203 1.18710 0.89485 0.95230 0.92539
0.96723 1.21225 0.91217 1.32302 1.10953 0.93582 1.25151 0.97443
0.96667 0.96334 1.70286 1.02482 1.32773 1.46733 0.86483 0.78437
0.83340 0.79254 1.19782 1.20764 1.21802 1.20961 0.99112 0.98448
0.90374 0.90948 1.21910 0.95958 1.00924 0.98959 1.21353 0.93444
1.01418 0.98372 1.30004 1.11522 1.13898 1.15475 1.08044 0.78666
0.75418 0.78357 1.93494 1.80204 1.71450 1.53984 1.93494 1.78782
1.38362 1.87417 1.30149 1.21773 1.10939 1.07666 0.93261 0.96387
0.94438 0.92136 0.92729 0.93958 0.94052 0.93372 0.90019 0.89195
0.86800 0.90365 0.82387 0.82761 0.86298 0.84445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.03 7.52 71.98 0.54 -4.49 16
2 C -0.08 -3.25 2.57 -10.79 -0.03 -3.28 16
3 C -0.13 -4.95 8.63 71.98 0.62 -4.33 16
4 C 0.06 2.53 1.29 -11.54 -0.01 2.52 16
5 H 0.01 0.70 7.96 -2.38 -0.02 0.68 16
6 C -0.52 -25.66 5.78 25.60 0.15 -25.51 16
7 H 0.05 2.34 6.74 -2.91 -0.02 2.32 16
8 C 0.04 2.29 3.48 84.65 0.29 2.59 16
9 N -0.88 -46.91 10.12 21.45 0.22 -46.70 16
10 Si 0.90 41.88 29.60 68.60 2.03 43.91 16
11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16
12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
13 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
14 C -0.07 -2.32 1.46 -10.92 -0.02 -2.33 16
15 H 0.07 2.51 6.41 -2.39 -0.02 2.49 16
16 C -0.14 -3.36 4.87 30.32 0.15 -3.22 16
17 C -0.11 -1.94 5.73 30.47 0.17 -1.77 16
18 C -0.58 -9.98 6.35 71.99 0.46 -9.52 16
19 S 2.41 68.51 5.30 -56.49 -0.30 68.21 16
20 O -0.99 -34.55 18.10 -127.38 -2.31 -36.86 16
21 O -0.98 -34.98 17.95 -127.38 -2.29 -37.27 16
22 C -0.57 -18.60 5.37 72.00 0.39 -18.21 16
23 H 0.05 2.40 5.06 -2.39 -0.01 2.39 16
24 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16
25 H 0.04 1.73 7.45 -2.39 -0.02 1.71 16
26 H 0.06 2.04 6.06 -2.39 -0.01 2.03 16
27 H 0.05 1.83 6.78 -2.39 -0.02 1.81 16
28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16
29 H 0.04 1.75 6.82 -2.39 -0.02 1.74 16
30 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16
31 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16
32 H 0.09 2.10 5.97 -2.39 -0.01 2.09 16
33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16
34 H 0.08 1.52 8.02 -2.38 -0.02 1.50 16
35 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16
36 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16
37 H 0.12 4.48 6.32 -2.39 -0.02 4.46 16
38 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16
Total: -1.00 -65.99 294.28 1.10 -64.89
By element:
Atomic # 1 Polarization: 10.33 SS G_CDS: 1.04 Total: 11.37 kcal
Atomic # 6 Polarization: -70.27 SS G_CDS: 2.71 Total: -67.55 kcal
Atomic # 7 Polarization: -46.91 SS G_CDS: 0.22 Total: -46.70 kcal
Atomic # 8 Polarization: -69.54 SS G_CDS: -4.59 Total: -74.13 kcal
Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal
Atomic # 16 Polarization: 68.51 SS G_CDS: -0.30 Total: 68.21 kcal
Total: -65.99 1.10 -64.89 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260328559.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.963 kcal
(2) G-P(sol) polarization free energy of solvation -65.988 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.951 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.885 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds