Wall clock time and date at job start Mon Mar 30 2020 04:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46937 * 2 1 4 4 C 1.53002 * 109.47119 * 119.99773 * 2 1 3 5 5 H 1.09004 * 109.46779 * 53.21835 * 4 2 1 6 6 C 1.50694 * 109.47288 * 293.21975 * 4 2 1 7 7 H 1.08001 * 119.99731 * 245.92147 * 6 4 2 8 8 C 1.37870 * 120.00381 * 66.19470 * 6 4 2 9 9 N 1.31521 * 119.99878 * 24.01340 * 8 6 4 10 10 Si 1.86802 * 120.00199 * 204.01449 * 8 6 4 11 11 H 1.48494 * 109.47172 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47271 * 119.99963 * 10 8 6 13 13 H 1.48495 * 109.47119 * 239.99989 * 10 8 6 14 14 C 1.53004 * 109.46935 * 173.21334 * 4 2 1 15 15 H 1.08999 * 109.38311 * 55.45303 * 14 4 2 16 16 C 1.52590 * 109.38667 * 295.66235 * 14 4 2 17 17 C 1.52584 * 110.63922 * 169.85729 * 16 14 4 18 18 C 1.53035 * 109.99023 * 69.98599 * 17 16 14 19 19 S 1.81667 * 108.99655 * 296.34904 * 18 17 16 20 20 O 1.42105 * 108.66366 * 168.62561 * 19 18 17 21 21 O 1.42097 * 108.66633 * 299.87198 * 19 18 17 22 22 C 1.53039 * 109.38248 * 175.13432 * 14 4 2 23 23 H 1.09002 * 109.46916 * 306.98534 * 1 2 3 24 24 H 1.08994 * 109.47258 * 66.98581 * 1 2 3 25 25 H 1.09004 * 109.46848 * 186.99077 * 1 2 3 26 26 H 1.09000 * 109.46739 * 239.99972 * 2 1 3 27 27 H 1.09000 * 109.47206 * 185.33078 * 3 2 1 28 28 H 1.08996 * 109.47300 * 305.32609 * 3 2 1 29 29 H 1.09001 * 109.47306 * 65.33298 * 3 2 1 30 30 H 0.96998 * 119.99962 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.23897 * 290.15218 * 16 14 4 32 32 H 1.08992 * 109.24140 * 49.55619 * 16 14 4 33 33 H 1.09001 * 109.38461 * 190.14095 * 17 16 14 34 34 H 1.09007 * 109.38593 * 309.82504 * 17 16 14 35 35 H 1.09001 * 109.55154 * 56.20437 * 18 17 16 36 36 H 1.08995 * 109.55112 * 176.40060 * 18 17 16 37 37 H 1.09003 * 109.54752 * 303.66342 * 22 14 4 38 38 H 1.09000 * 109.55148 * 63.95516 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5809 -1.7079 1.3120 6 6 1.6794 0.0794 2.4740 7 1 2.4572 0.5262 3.0754 8 6 0.3567 0.2369 2.8298 9 7 -0.5392 -0.6419 2.4364 10 14 -0.1628 1.6984 3.8707 11 1 1.0256 2.5332 4.1802 12 1 -1.1572 2.5097 3.1236 13 1 -0.7699 1.2139 5.1364 14 6 3.5605 -0.8705 1.1669 15 1 4.0131 0.1106 1.0230 16 6 3.9179 -1.7711 -0.0119 17 6 5.4205 -1.7407 -0.2757 18 6 6.1646 -2.4562 0.8540 19 16 5.8964 -1.5500 2.4056 20 8 6.3596 -2.3497 3.4851 21 8 6.3980 -0.2292 2.2534 22 6 4.0821 -1.4819 2.4693 23 1 -0.3633 0.6183 0.8209 24 1 -0.3633 0.4017 -0.9458 25 1 -0.3633 -1.0201 0.1251 26 1 1.8933 -0.5138 -0.8900 27 1 3.1258 1.4440 -0.0955 28 1 1.6008 1.9831 -0.8384 29 1 1.7567 1.9280 0.9339 30 1 -1.4698 -0.5310 2.6865 31 1 3.6131 -2.7934 0.2118 32 1 3.3900 -1.4257 -0.9007 33 1 5.6319 -2.2401 -1.2212 34 1 5.7571 -0.7054 -0.3319 35 1 5.7843 -3.4727 0.9549 36 1 7.2303 -2.4863 0.6271 37 1 3.7696 -0.8656 3.3124 38 1 3.6831 -2.4897 2.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260328559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:12 Heat of formation + Delta-G solvation = -104.848124 kcal Electronic energy + Delta-G solvation = -19227.615062 eV Core-core repulsion = 16389.169124 eV Total energy + Delta-G solvation = -2838.445938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.60780 -37.93277 -36.97760 -36.41116 -33.66733 -32.84132 -28.59376 -28.49346 -27.48507 -25.59960 -22.92620 -21.78097 -20.08047 -19.65481 -18.00188 -17.58274 -17.18786 -16.60903 -16.35934 -15.85602 -15.57617 -15.04107 -14.47156 -14.42979 -14.07814 -13.79621 -13.66645 -13.14451 -13.06378 -13.01044 -12.93310 -12.69326 -12.48195 -12.44741 -12.22768 -12.17567 -11.78371 -11.75411 -11.70233 -11.35740 -11.27823 -10.88302 -10.61097 -10.31265 -9.77779 -8.09909 -5.94871 -0.76426 1.34732 1.43861 1.50654 1.89524 2.47380 2.83156 3.12271 3.20279 3.83686 3.87277 3.99159 4.05431 4.28819 4.44191 4.59626 4.64684 4.69278 4.76617 4.83123 4.97931 5.06006 5.12367 5.18092 5.27891 5.28390 5.45569 5.49516 5.55355 5.64643 5.70019 5.84073 6.01857 6.09718 6.17894 6.53482 7.05605 7.58186 8.96970 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.007796 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.280064 B = 3590.718790 C = 4163.408989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.083 4.083 3 C -0.132 4.132 4 C 0.060 3.940 5 H 0.015 0.985 6 C -0.519 4.519 7 H 0.046 0.954 8 C 0.045 3.955 9 N -0.884 5.884 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.291 1.291 14 C -0.069 4.069 15 H 0.072 0.928 16 C -0.140 4.140 17 C -0.108 4.108 18 C -0.576 4.576 19 S 2.406 3.594 20 O -0.994 6.994 21 O -0.983 6.983 22 C -0.575 4.575 23 H 0.048 0.952 24 H 0.017 0.983 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.257 0.743 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.119 0.881 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -4.127 -8.086 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C -0.190 4.190 4 C 0.040 3.960 5 H 0.033 0.967 6 C -0.557 4.557 7 H 0.064 0.936 8 C -0.156 4.156 9 N -0.523 5.523 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.218 1.218 14 C -0.089 4.089 15 H 0.091 0.909 16 C -0.178 4.178 17 C -0.146 4.146 18 C -0.709 4.709 19 S 2.595 3.405 20 O -0.991 6.991 21 O -0.981 6.981 22 C -0.705 4.705 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.096 0.904 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.137 0.863 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.840 -3.822 -7.413 12.899 hybrid contribution -1.456 0.661 0.745 1.764 sum 8.384 -3.161 -6.669 11.169 Atomic orbital electron populations 1.21880 0.96634 1.00994 0.97789 1.21259 0.94983 0.96043 0.97884 1.21743 1.00060 0.96952 1.00203 1.18710 0.89485 0.95230 0.92539 0.96723 1.21225 0.91217 1.32302 1.10953 0.93582 1.25151 0.97443 0.96667 0.96334 1.70286 1.02482 1.32773 1.46733 0.86483 0.78437 0.83340 0.79254 1.19782 1.20764 1.21802 1.20961 0.99112 0.98448 0.90374 0.90948 1.21910 0.95958 1.00924 0.98959 1.21353 0.93444 1.01418 0.98372 1.30004 1.11522 1.13898 1.15475 1.08044 0.78666 0.75418 0.78357 1.93494 1.80204 1.71450 1.53984 1.93494 1.78782 1.38362 1.87417 1.30149 1.21773 1.10939 1.07666 0.93261 0.96387 0.94438 0.92136 0.92729 0.93958 0.94052 0.93372 0.90019 0.89195 0.86800 0.90365 0.82387 0.82761 0.86298 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 7.52 71.98 0.54 -4.49 16 2 C -0.08 -3.25 2.57 -10.79 -0.03 -3.28 16 3 C -0.13 -4.95 8.63 71.98 0.62 -4.33 16 4 C 0.06 2.53 1.29 -11.54 -0.01 2.52 16 5 H 0.01 0.70 7.96 -2.38 -0.02 0.68 16 6 C -0.52 -25.66 5.78 25.60 0.15 -25.51 16 7 H 0.05 2.34 6.74 -2.91 -0.02 2.32 16 8 C 0.04 2.29 3.48 84.65 0.29 2.59 16 9 N -0.88 -46.91 10.12 21.45 0.22 -46.70 16 10 Si 0.90 41.88 29.60 68.60 2.03 43.91 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 14 C -0.07 -2.32 1.46 -10.92 -0.02 -2.33 16 15 H 0.07 2.51 6.41 -2.39 -0.02 2.49 16 16 C -0.14 -3.36 4.87 30.32 0.15 -3.22 16 17 C -0.11 -1.94 5.73 30.47 0.17 -1.77 16 18 C -0.58 -9.98 6.35 71.99 0.46 -9.52 16 19 S 2.41 68.51 5.30 -56.49 -0.30 68.21 16 20 O -0.99 -34.55 18.10 -127.38 -2.31 -36.86 16 21 O -0.98 -34.98 17.95 -127.38 -2.29 -37.27 16 22 C -0.57 -18.60 5.37 72.00 0.39 -18.21 16 23 H 0.05 2.40 5.06 -2.39 -0.01 2.39 16 24 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.04 1.73 7.45 -2.39 -0.02 1.71 16 26 H 0.06 2.04 6.06 -2.39 -0.01 2.03 16 27 H 0.05 1.83 6.78 -2.39 -0.02 1.81 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.75 6.82 -2.39 -0.02 1.74 16 30 H 0.26 13.27 8.31 -92.71 -0.77 12.50 16 31 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 32 H 0.09 2.10 5.97 -2.39 -0.01 2.09 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.52 8.02 -2.38 -0.02 1.50 16 35 H 0.16 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.12 4.48 6.32 -2.39 -0.02 4.46 16 38 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 Total: -1.00 -65.99 294.28 1.10 -64.89 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.04 Total: 11.37 kcal Atomic # 6 Polarization: -70.27 SS G_CDS: 2.71 Total: -67.55 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.22 Total: -46.70 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: -4.59 Total: -74.13 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 68.51 SS G_CDS: -0.30 Total: 68.21 kcal Total: -65.99 1.10 -64.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.963 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds