Wall clock time and date at job start Mon Mar 30 2020 04:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47024 * 120.00591 * 2 1 3 5 5 H 1.09001 * 109.46929 * 210.95059 * 4 2 1 6 6 C 1.50705 * 109.47410 * 90.95495 * 4 2 1 7 7 H 1.07995 * 119.99769 * 245.54888 * 6 4 2 8 8 C 1.37875 * 119.99607 * 65.54262 * 6 4 2 9 9 N 1.31520 * 119.99265 * 185.95079 * 8 6 4 10 10 Si 1.86796 * 120.00439 * 5.94766 * 8 6 4 11 11 H 1.48504 * 109.46701 * 94.83356 * 10 8 6 12 12 H 1.48500 * 109.47370 * 214.83109 * 10 8 6 13 13 H 1.48491 * 109.47219 * 334.83553 * 10 8 6 14 14 C 1.52997 * 109.47250 * 330.95264 * 4 2 1 15 15 H 1.09000 * 109.38532 * 54.36151 * 14 4 2 16 16 C 1.52589 * 109.29926 * 174.09664 * 14 4 2 17 17 C 1.52593 * 110.64157 * 190.09163 * 16 14 4 18 18 C 1.53041 * 109.98302 * 290.01142 * 17 16 14 19 19 S 1.81929 * 109.03705 * 63.64026 * 18 17 16 20 20 O 1.42104 * 108.77215 * 191.41866 * 19 18 17 21 21 O 1.42103 * 108.63289 * 60.02332 * 19 18 17 22 22 C 1.53035 * 109.38435 * 294.56688 * 14 4 2 23 23 H 1.08996 * 109.47495 * 55.72123 * 1 2 3 24 24 H 1.09005 * 109.47489 * 175.72498 * 1 2 3 25 25 H 1.09001 * 109.47275 * 295.72026 * 1 2 3 26 26 H 1.09005 * 109.46882 * 240.00522 * 2 1 3 27 27 H 1.09004 * 109.47040 * 182.23936 * 3 2 1 28 28 H 1.08996 * 109.47473 * 302.24758 * 3 2 1 29 29 H 1.09005 * 109.46955 * 62.24939 * 3 2 1 30 30 H 0.97004 * 119.99215 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.24508 * 310.38957 * 16 14 4 32 32 H 1.09002 * 109.24590 * 69.79216 * 16 14 4 33 33 H 1.08999 * 109.38764 * 50.17048 * 17 16 14 34 34 H 1.09003 * 109.38363 * 169.86097 * 17 16 14 35 35 H 1.09006 * 109.54780 * 183.50125 * 18 17 16 36 36 H 1.08991 * 109.55213 * 303.69598 * 18 17 16 37 37 H 1.09000 * 109.55258 * 296.15642 * 22 14 4 38 38 H 1.09009 * 109.55163 * 56.35129 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 2.9920 -0.2881 1.5557 6 6 2.2297 -2.1845 0.9421 7 1 1.6148 -2.9236 1.4338 8 6 3.1884 -2.5794 0.0332 9 7 3.2763 -3.8425 -0.3227 10 14 4.3623 -1.3206 -0.6925 11 1 5.6202 -1.3042 0.0968 12 1 4.6662 -1.6812 -2.1006 13 1 3.7340 0.0241 -0.6504 14 6 1.0210 -0.5655 2.3798 15 1 0.0447 -0.9078 2.0367 16 6 1.4611 -1.4063 3.5747 17 6 0.3532 -1.4745 4.6217 18 6 0.1826 -0.1094 5.2923 19 16 -0.3602 1.1001 4.0464 20 8 -0.2622 2.4043 4.6020 21 8 -1.5988 0.6659 3.5015 22 6 0.9303 0.9082 2.7822 23 1 -0.3634 0.5788 -0.8491 24 1 -0.3634 -1.0248 -0.0766 25 1 -0.3634 0.4460 0.9258 26 1 1.8933 -0.5138 -0.8901 27 1 3.1292 1.4427 -0.0402 28 1 1.6441 1.9678 -0.8691 29 1 1.7099 1.9445 0.9095 30 1 3.9510 -4.1204 -0.9619 31 1 1.6983 -2.4150 3.2364 32 1 2.3498 -0.9595 4.0206 33 1 -0.5821 -1.7607 4.1407 34 1 0.6130 -2.2178 5.3755 35 1 -0.5665 -0.1815 6.0809 36 1 1.1333 0.2081 5.7203 37 1 1.8882 1.2357 3.1862 38 1 0.6778 1.5099 1.9090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260328561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:15 Heat of formation + Delta-G solvation = -76.621134 kcal Electronic energy + Delta-G solvation = -19385.943422 eV Core-core repulsion = 16548.721498 eV Total energy + Delta-G solvation = -2837.221924 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.68817 -36.78279 -35.83814 -35.03491 -32.37353 -31.01769 -28.60895 -26.77094 -26.68327 -23.45661 -21.90317 -20.40318 -18.74226 -18.58197 -16.85600 -16.38433 -16.05819 -15.45800 -15.13709 -14.69316 -14.23361 -13.56620 -13.47513 -13.12041 -12.88056 -12.77922 -12.31865 -11.96530 -11.84922 -11.73514 -11.72599 -11.24827 -11.14750 -11.02374 -10.90904 -10.64034 -10.39443 -10.35562 -10.18909 -10.05862 -9.72079 -9.46807 -8.92068 -8.86612 -8.52827 -6.10658 -4.09467 0.24653 2.85210 3.25592 3.37152 3.39343 3.81655 4.14473 4.40926 4.75986 4.80136 5.00783 5.09374 5.21377 5.28718 5.47800 5.64262 5.72228 5.82616 5.85160 5.88801 5.96544 6.16211 6.19332 6.25835 6.41127 6.47997 6.56527 6.62583 6.72598 6.91543 6.97020 7.09967 7.26323 7.42807 7.74984 8.45952 8.92489 9.52435 11.01116 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.007917 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.277620 B = 3535.855446 C = 3972.086695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.165 4.165 4 C 0.035 3.965 5 H 0.029 0.971 6 C -0.512 4.512 7 H 0.078 0.922 8 C 0.073 3.927 9 N -0.899 5.899 10 Si 0.843 3.157 11 H -0.285 1.285 12 H -0.292 1.292 13 H -0.225 1.225 14 C -0.061 4.061 15 H 0.092 0.908 16 C -0.134 4.134 17 C -0.110 4.110 18 C -0.599 4.599 19 S 2.398 3.602 20 O -0.960 6.960 21 O -0.941 6.941 22 C -0.603 4.603 23 H 0.035 0.965 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.262 0.738 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.549 7.950 7.638 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.222 4.222 4 C 0.015 3.985 5 H 0.047 0.953 6 C -0.550 4.550 7 H 0.096 0.904 8 C -0.129 4.129 9 N -0.537 5.537 10 Si 0.670 3.330 11 H -0.212 1.212 12 H -0.219 1.219 13 H -0.149 1.149 14 C -0.080 4.080 15 H 0.110 0.890 16 C -0.172 4.172 17 C -0.148 4.148 18 C -0.729 4.729 19 S 2.584 3.416 20 O -0.957 6.957 21 O -0.939 6.939 22 C -0.734 4.734 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.228 8.413 7.567 12.080 hybrid contribution 1.543 0.084 -0.444 1.608 sum -2.685 8.498 7.123 11.408 Atomic orbital electron populations 1.22039 0.96580 1.01917 1.00002 1.21631 0.94860 0.93912 1.01215 1.22448 1.01322 0.98093 1.00322 1.19103 0.93067 0.96836 0.89444 0.95332 1.21001 1.19429 0.90062 1.24485 0.90449 1.24967 0.97214 0.94886 0.95797 1.69921 1.34647 1.15890 1.33264 0.87580 0.81763 0.85200 0.78460 1.21173 1.21850 1.14876 1.21008 1.03032 0.86817 0.97174 0.89026 1.21844 0.96749 1.04717 0.93846 1.21365 1.01483 0.93088 0.98883 1.30213 1.12141 1.14199 1.16302 1.08465 0.78079 0.76134 0.78970 1.93549 1.87745 1.36118 1.78267 1.93566 1.39613 1.82956 1.77725 1.30717 1.17358 1.08472 1.16850 0.94568 0.91877 0.92950 0.91212 0.92422 0.94108 0.92763 0.92815 0.87340 0.91859 0.90130 0.90261 0.85853 0.85390 0.85226 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.79 37.16 0.29 -2.32 16 2 C -0.10 -1.86 1.67 -90.62 -0.15 -2.01 16 3 C -0.17 -2.73 8.35 37.16 0.31 -2.42 16 4 C 0.04 0.71 0.94 -91.77 -0.09 0.62 16 5 H 0.03 0.58 6.76 -51.93 -0.35 0.23 16 6 C -0.51 -12.59 7.99 -34.44 -0.28 -12.87 16 7 H 0.08 2.05 6.82 -52.49 -0.36 1.69 16 8 C 0.07 1.94 5.28 -17.82 -0.09 1.85 16 9 N -0.90 -26.02 13.96 55.43 0.77 -25.25 16 10 Si 0.84 19.37 25.70 -169.99 -4.37 15.00 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.23 -4.60 2.94 56.52 0.17 -4.44 16 14 C -0.06 -1.01 1.07 -90.81 -0.10 -1.10 16 15 H 0.09 1.57 5.94 -51.93 -0.31 1.26 16 16 C -0.13 -2.02 4.77 -27.15 -0.13 -2.15 16 17 C -0.11 -1.35 5.73 -26.92 -0.15 -1.51 16 18 C -0.60 -6.48 6.36 37.18 0.24 -6.24 16 19 S 2.40 32.43 5.32 -107.50 -0.57 31.86 16 20 O -0.96 -15.44 18.11 -57.81 -1.05 -16.49 16 21 O -0.94 -15.65 17.96 -57.81 -1.04 -16.69 16 22 C -0.60 -8.29 4.10 37.18 0.15 -8.14 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 25 H 0.05 0.84 4.50 -51.93 -0.23 0.61 16 26 H 0.07 1.49 5.35 -51.93 -0.28 1.22 16 27 H 0.06 0.98 6.18 -51.93 -0.32 0.66 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.79 4.75 -51.93 -0.25 0.54 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 31 H 0.11 1.91 6.00 -51.93 -0.31 1.59 16 32 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.08 1.02 8.02 -51.93 -0.42 0.60 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.15 1.98 3.72 -51.92 -0.19 1.78 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -31.62 283.56 -7.74 -39.36 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.76 Total: 4.22 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 0.00 Total: -36.29 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.77 Total: -25.25 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -2.08 Total: -33.18 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.37 Total: 15.00 kcal Atomic # 16 Polarization: 32.43 SS G_CDS: -0.57 Total: 31.86 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.62 -7.74 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.260 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds