Wall clock time and date at job start Mon Mar 30 2020 04:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 C 1.52997 * 109.47024 * 120.00591 * 2 1 3 5 5 H 1.09001 * 109.46929 * 210.95059 * 4 2 1 6 6 C 1.50705 * 109.47410 * 90.95495 * 4 2 1 7 7 H 1.07995 * 119.99769 * 245.54888 * 6 4 2 8 8 C 1.37875 * 119.99607 * 65.54262 * 6 4 2 9 9 N 1.31520 * 119.99265 * 185.95079 * 8 6 4 10 10 Si 1.86796 * 120.00439 * 5.94766 * 8 6 4 11 11 H 1.48504 * 109.46701 * 94.83356 * 10 8 6 12 12 H 1.48500 * 109.47370 * 214.83109 * 10 8 6 13 13 H 1.48491 * 109.47219 * 334.83553 * 10 8 6 14 14 C 1.52997 * 109.47250 * 330.95264 * 4 2 1 15 15 H 1.09000 * 109.38532 * 54.36151 * 14 4 2 16 16 C 1.52589 * 109.29926 * 174.09664 * 14 4 2 17 17 C 1.52593 * 110.64157 * 190.09163 * 16 14 4 18 18 C 1.53041 * 109.98302 * 290.01142 * 17 16 14 19 19 S 1.81929 * 109.03705 * 63.64026 * 18 17 16 20 20 O 1.42104 * 108.77215 * 191.41866 * 19 18 17 21 21 O 1.42103 * 108.63289 * 60.02332 * 19 18 17 22 22 C 1.53035 * 109.38435 * 294.56688 * 14 4 2 23 23 H 1.08996 * 109.47495 * 55.72123 * 1 2 3 24 24 H 1.09005 * 109.47489 * 175.72498 * 1 2 3 25 25 H 1.09001 * 109.47275 * 295.72026 * 1 2 3 26 26 H 1.09005 * 109.46882 * 240.00522 * 2 1 3 27 27 H 1.09004 * 109.47040 * 182.23936 * 3 2 1 28 28 H 1.08996 * 109.47473 * 302.24758 * 3 2 1 29 29 H 1.09005 * 109.46955 * 62.24939 * 3 2 1 30 30 H 0.97004 * 119.99215 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.24508 * 310.38957 * 16 14 4 32 32 H 1.09002 * 109.24590 * 69.79216 * 16 14 4 33 33 H 1.08999 * 109.38764 * 50.17048 * 17 16 14 34 34 H 1.09003 * 109.38363 * 169.86097 * 17 16 14 35 35 H 1.09006 * 109.54780 * 183.50125 * 18 17 16 36 36 H 1.08991 * 109.55213 * 303.69598 * 18 17 16 37 37 H 1.09000 * 109.55258 * 296.15642 * 22 14 4 38 38 H 1.09009 * 109.55163 * 56.35129 * 22 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 2.9920 -0.2881 1.5557 6 6 2.2297 -2.1845 0.9421 7 1 1.6148 -2.9236 1.4338 8 6 3.1884 -2.5794 0.0332 9 7 3.2763 -3.8425 -0.3227 10 14 4.3623 -1.3206 -0.6925 11 1 5.6202 -1.3042 0.0968 12 1 4.6662 -1.6812 -2.1006 13 1 3.7340 0.0241 -0.6504 14 6 1.0210 -0.5655 2.3798 15 1 0.0447 -0.9078 2.0367 16 6 1.4611 -1.4063 3.5747 17 6 0.3532 -1.4745 4.6217 18 6 0.1826 -0.1094 5.2923 19 16 -0.3602 1.1001 4.0464 20 8 -0.2622 2.4043 4.6020 21 8 -1.5988 0.6659 3.5015 22 6 0.9303 0.9082 2.7822 23 1 -0.3634 0.5788 -0.8491 24 1 -0.3634 -1.0248 -0.0766 25 1 -0.3634 0.4460 0.9258 26 1 1.8933 -0.5138 -0.8901 27 1 3.1292 1.4427 -0.0402 28 1 1.6441 1.9678 -0.8691 29 1 1.7099 1.9445 0.9095 30 1 3.9510 -4.1204 -0.9619 31 1 1.6983 -2.4150 3.2364 32 1 2.3498 -0.9595 4.0206 33 1 -0.5821 -1.7607 4.1407 34 1 0.6130 -2.2178 5.3755 35 1 -0.5665 -0.1815 6.0809 36 1 1.1333 0.2081 5.7203 37 1 1.8882 1.2357 3.1862 38 1 0.6778 1.5099 1.9090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260328561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:14 Heat of formation + Delta-G solvation = -99.514068 kcal Electronic energy + Delta-G solvation = -19386.936134 eV Core-core repulsion = 16548.721498 eV Total energy + Delta-G solvation = -2838.214636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06793 -37.95532 -36.99930 -36.24942 -34.33555 -32.19240 -30.16257 -28.13905 -27.88822 -25.04729 -23.20302 -21.67440 -20.20264 -19.73439 -18.58812 -17.63528 -17.22866 -16.58474 -16.50447 -16.18549 -15.46871 -15.11801 -14.81589 -14.54111 -14.43534 -13.90143 -13.56331 -13.17869 -13.06203 -13.03627 -12.95462 -12.88101 -12.51573 -12.40900 -12.18364 -12.07207 -11.89318 -11.70000 -11.54000 -11.38066 -11.14843 -11.11106 -10.60021 -10.52141 -10.26574 -8.16359 -6.16471 -0.80010 1.39698 1.47036 1.55227 1.83194 2.47097 2.78666 3.08965 3.20515 3.79434 3.80443 3.94846 3.98655 4.21505 4.28395 4.39641 4.42846 4.54557 4.62571 4.79228 4.86616 4.91500 4.98233 5.02609 5.07637 5.14447 5.20082 5.34404 5.35543 5.57274 5.58366 5.59438 5.76632 5.82318 5.96087 6.46051 6.91166 7.48226 8.98540 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.007917 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.277620 B = 3535.855446 C = 3972.086695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.165 4.165 4 C 0.032 3.968 5 H 0.037 0.963 6 C -0.493 4.493 7 H 0.043 0.957 8 C 0.009 3.991 9 N -0.957 5.957 10 Si 0.896 3.104 11 H -0.288 1.288 12 H -0.309 1.309 13 H -0.182 1.182 14 C -0.061 4.061 15 H 0.077 0.923 16 C -0.136 4.136 17 C -0.109 4.109 18 C -0.580 4.580 19 S 2.411 3.589 20 O -0.983 6.983 21 O -0.979 6.979 22 C -0.606 4.606 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.257 0.743 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 10.779 9.415 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.222 4.222 4 C 0.012 3.988 5 H 0.055 0.945 6 C -0.532 4.532 7 H 0.061 0.939 8 C -0.186 4.186 9 N -0.598 5.598 10 Si 0.722 3.278 11 H -0.215 1.215 12 H -0.236 1.236 13 H -0.104 1.104 14 C -0.080 4.080 15 H 0.096 0.904 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.712 4.712 19 S 2.599 3.401 20 O -0.980 6.980 21 O -0.976 6.976 22 C -0.736 4.736 23 H 0.073 0.927 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.168 0.832 36 H 0.178 0.822 37 H 0.178 0.822 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.074 11.294 9.337 15.209 hybrid contribution 1.419 -0.898 -0.921 1.915 sum -2.655 10.396 8.416 13.637 Atomic orbital electron populations 1.22025 0.95740 1.00969 1.01703 1.21559 0.95773 0.95635 0.99209 1.22429 1.01157 0.96025 1.02546 1.19115 0.94690 0.93478 0.91514 0.94521 1.21360 1.17179 0.92402 1.22220 0.93907 1.25792 0.99471 0.96410 0.96962 1.70092 1.36187 1.18365 1.35180 0.86769 0.79522 0.85129 0.76396 1.21469 1.23650 1.10419 1.20858 1.01169 0.89370 0.96642 0.90450 1.21783 0.98765 1.02481 0.94257 1.21315 0.99984 0.94786 0.98641 1.30060 1.14588 1.11261 1.15259 1.07937 0.77149 0.75995 0.79024 1.93523 1.87919 1.38054 1.78501 1.93522 1.41768 1.83457 1.78834 1.30678 1.19348 1.05952 1.17595 0.92747 0.94280 0.91364 0.93963 0.92494 0.92427 0.90319 0.93433 0.90976 0.89787 0.90993 0.88182 0.83218 0.82238 0.82214 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 7.79 71.98 0.56 -4.45 16 2 C -0.10 -3.76 1.67 -10.80 -0.02 -3.77 16 3 C -0.17 -4.80 8.35 71.98 0.60 -4.20 16 4 C 0.03 1.23 0.94 -11.54 -0.01 1.22 16 5 H 0.04 1.38 6.76 -2.39 -0.02 1.36 16 6 C -0.49 -24.97 7.99 25.60 0.20 -24.76 16 7 H 0.04 2.41 6.82 -2.91 -0.02 2.39 16 8 C 0.01 0.51 5.28 84.65 0.45 0.95 16 9 N -0.96 -58.21 13.96 21.45 0.30 -57.91 16 10 Si 0.90 40.33 25.70 68.60 1.76 42.09 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.18 -6.89 2.94 99.48 0.29 -6.60 16 14 C -0.06 -1.92 1.07 -10.92 -0.01 -1.93 16 15 H 0.08 2.63 5.94 -2.39 -0.01 2.62 16 16 C -0.14 -3.85 4.77 30.32 0.14 -3.70 16 17 C -0.11 -2.38 5.73 30.47 0.17 -2.21 16 18 C -0.58 -9.94 6.36 72.00 0.46 -9.48 16 19 S 2.41 57.76 5.32 -56.49 -0.30 57.46 16 20 O -0.98 -28.41 18.11 -127.40 -2.31 -30.71 16 21 O -0.98 -30.86 17.96 -127.40 -2.29 -33.15 16 22 C -0.61 -14.56 4.10 71.99 0.30 -14.26 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.04 1.48 8.02 -2.38 -0.02 1.46 16 25 H 0.07 2.09 4.50 -2.39 -0.01 2.07 16 26 H 0.04 1.77 5.35 -2.38 -0.01 1.76 16 27 H 0.06 1.67 6.18 -2.38 -0.01 1.65 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.91 4.75 -2.38 -0.01 1.90 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.07 2.58 6.00 -2.39 -0.01 2.57 16 32 H 0.08 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.07 1.71 8.02 -2.39 -0.02 1.69 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.15 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.16 1.86 8.14 -2.39 -0.02 1.85 16 37 H 0.16 2.87 8.14 -2.39 -0.02 2.86 16 38 H 0.15 3.47 3.72 -2.38 -0.01 3.46 16 Total: -1.00 -71.65 283.56 0.65 -71.00 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.64 Total: 17.81 kcal Atomic # 6 Polarization: -69.43 SS G_CDS: 2.85 Total: -66.59 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.30 Total: -57.91 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -4.59 Total: -63.87 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.76 Total: 42.09 kcal Atomic # 16 Polarization: 57.76 SS G_CDS: -0.30 Total: 57.46 kcal Total: -71.65 0.65 -71.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260328561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.513 kcal (2) G-P(sol) polarization free energy of solvation -71.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds