Wall clock time and date at job start Mon Mar 30 2020 04:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46951 * 2 1 4 4 C 1.53000 * 109.47368 * 120.00041 * 2 1 3 5 5 H 1.09002 * 109.47366 * 185.30944 * 4 2 1 6 6 C 1.52999 * 109.47223 * 305.31342 * 4 2 1 7 7 C 1.50692 * 109.47047 * 292.34406 * 6 4 2 8 8 H 1.07997 * 120.00147 * 359.62873 * 7 6 4 9 9 C 1.37883 * 119.99851 * 179.62812 * 7 6 4 10 10 N 1.31514 * 120.00004 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99935 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47684 * 89.99978 * 11 9 7 13 13 H 1.48503 * 109.46799 * 210.00227 * 11 9 7 14 14 H 1.48499 * 109.46817 * 329.99573 * 11 9 7 15 15 C 1.53005 * 109.46810 * 65.31714 * 4 2 1 16 16 H 1.09009 * 110.04543 * 295.97094 * 15 4 2 17 17 C 1.53873 * 110.03118 * 57.37169 * 15 4 2 18 18 C 1.54168 * 108.59590 * 166.40614 * 17 15 4 19 19 S 1.82920 * 105.08342 * 332.16160 * 18 17 15 20 20 O 1.42103 * 109.35484 * 115.52496 * 19 18 17 21 21 O 1.42104 * 109.35197 * 248.72326 * 19 18 17 22 22 C 1.54734 * 109.86993 * 174.66537 * 15 4 2 23 23 H 1.09001 * 109.47262 * 307.68874 * 1 2 3 24 24 H 1.09000 * 109.47245 * 67.69312 * 1 2 3 25 25 H 1.09008 * 109.46950 * 187.69088 * 1 2 3 26 26 H 1.09000 * 109.46985 * 240.00714 * 2 1 3 27 27 H 1.09000 * 109.46864 * 170.32988 * 3 2 1 28 28 H 1.09001 * 109.47035 * 290.33045 * 3 2 1 29 29 H 1.09000 * 109.46327 * 50.32951 * 3 2 1 30 30 H 1.09002 * 109.46662 * 52.34299 * 6 4 2 31 31 H 1.09002 * 109.46916 * 172.33727 * 6 4 2 32 32 H 0.97001 * 119.99887 * 180.02562 * 10 9 7 33 33 H 1.09006 * 109.64251 * 46.62762 * 17 15 4 34 34 H 1.08989 * 109.64880 * 286.19645 * 17 15 4 35 35 H 1.08994 * 110.31586 * 91.05914 * 18 17 15 36 36 H 1.09000 * 110.31650 * 213.26075 * 18 17 15 37 37 H 1.09000 * 110.81617 * 79.96702 * 22 15 4 38 38 H 1.08997 * 110.98324 * 316.54309 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1259 -0.6396 1.2980 6 6 1.4239 -0.0813 2.4949 7 6 1.9647 1.3153 2.6618 8 1 2.6812 1.7051 1.9540 9 6 1.5448 2.0955 3.7183 10 7 0.6727 1.6206 4.5806 11 14 2.2146 3.8270 3.9248 12 1 1.3452 4.7845 3.1953 13 1 2.2383 4.1797 5.3672 14 1 3.5931 3.8931 3.3765 15 6 1.6421 -2.1972 1.1841 16 1 0.5564 -2.2928 1.2068 17 6 2.2007 -2.8376 -0.0987 18 6 2.0855 -4.3699 0.0264 19 16 2.1629 -4.7080 1.8224 20 8 0.9275 -5.2648 2.2505 21 8 3.3829 -5.3710 2.1246 22 6 2.2667 -2.9633 2.3745 23 1 -0.3634 0.6283 0.8132 24 1 -0.3634 0.3901 -0.9507 25 1 -0.3633 -1.0185 0.1375 26 1 1.8933 -0.5137 -0.8901 27 1 3.1162 1.4474 0.1726 28 1 1.8244 1.9041 -0.9637 29 1 1.5425 2.0037 0.7911 30 1 0.3403 -0.0405 2.3842 31 1 1.6774 -0.6765 3.3722 32 1 0.3770 2.1696 5.3236 33 1 3.2469 -2.5577 -0.2223 34 1 1.6258 -2.4959 -0.9592 35 1 1.1351 -4.7126 -0.3826 36 1 2.9162 -4.8549 -0.4862 37 1 1.6839 -2.8097 3.2827 38 1 3.3044 -2.6672 2.5279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260623015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:00 Heat of formation + Delta-G solvation = -111.370770 kcal Electronic energy + Delta-G solvation = -18768.962236 eV Core-core repulsion = 15930.233455 eV Total energy + Delta-G solvation = -2838.728781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87800 -38.01839 -37.02019 -35.99585 -34.37781 -31.73204 -29.82642 -28.34038 -27.29744 -25.40891 -23.01783 -22.02203 -19.78033 -19.52714 -18.39496 -17.66355 -17.28287 -16.68490 -16.43222 -15.83861 -15.46514 -15.05210 -14.70464 -14.51566 -14.05334 -13.68595 -13.37723 -13.21046 -13.08982 -13.02450 -12.88641 -12.85604 -12.74859 -12.49409 -12.36327 -12.08868 -11.94677 -11.83016 -11.61516 -11.29967 -11.06143 -10.96729 -10.64384 -10.43940 -10.20926 -8.07894 -6.08364 -0.79694 1.40700 1.42743 1.50796 1.69992 2.46649 2.73782 3.12939 3.26914 3.56525 3.77943 3.85720 4.07006 4.16114 4.33307 4.41064 4.42540 4.72378 4.74362 4.86478 4.94246 5.02259 5.05982 5.12081 5.18467 5.32110 5.35349 5.39418 5.42227 5.50973 5.66687 5.78970 5.92708 6.04829 6.07282 6.43744 7.05903 7.54260 9.04162 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.026925 B = 0.006107 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.693747 B = 4583.856663 C = 5122.755224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.156 4.156 4 C -0.057 4.057 5 H 0.064 0.936 6 C 0.024 3.976 7 C -0.514 4.514 8 H 0.086 0.914 9 C -0.005 4.005 10 N -0.938 5.938 11 Si 0.941 3.059 12 H -0.277 1.277 13 H -0.295 1.295 14 H -0.262 1.262 15 C -0.090 4.090 16 H 0.089 0.911 17 C -0.109 4.109 18 C -0.557 4.557 19 S 2.385 3.615 20 O -0.986 6.986 21 O -0.984 6.984 22 C -0.575 4.575 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.002 0.998 31 H -0.012 1.012 32 H 0.255 0.745 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.120 0.880 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 -8.253 -13.513 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.213 4.213 4 C -0.077 4.077 5 H 0.082 0.918 6 C -0.013 4.013 7 C -0.552 4.552 8 H 0.104 0.896 9 C -0.201 4.201 10 N -0.581 5.581 11 Si 0.768 3.232 12 H -0.203 1.203 13 H -0.221 1.221 14 H -0.186 1.186 15 C -0.110 4.110 16 H 0.108 0.892 17 C -0.148 4.148 18 C -0.691 4.691 19 S 2.575 3.425 20 O -0.983 6.983 21 O -0.981 6.981 22 C -0.706 4.706 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.021 0.979 31 H 0.007 0.993 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.138 0.862 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.058 -9.112 -12.812 16.017 hybrid contribution -0.024 1.826 0.807 1.997 sum 3.035 -7.286 -12.005 14.367 Atomic orbital electron populations 1.21900 0.96205 1.01464 1.00754 1.21021 0.95348 0.95941 0.97095 1.22325 1.00368 0.97663 1.00928 1.21109 0.99554 0.91096 0.95899 0.91764 1.19193 0.95428 0.94193 0.92499 1.22178 1.23910 0.99963 1.09161 0.89645 1.25802 0.96117 1.01854 0.96311 1.70106 1.34140 1.38160 1.15661 0.85799 0.79341 0.81363 0.76706 1.20326 1.22097 1.18644 1.21987 1.01056 0.96621 0.91366 0.89229 1.22127 1.05042 0.89152 0.98440 1.30266 1.13916 1.05353 1.19525 1.08945 0.73416 0.78304 0.81839 1.93540 1.45638 1.77188 1.81949 1.93528 1.46577 1.73411 1.84587 1.30578 1.10855 1.21293 1.07848 0.94990 0.92180 0.92115 0.89171 0.93708 0.93537 0.91576 0.97940 0.99323 0.93638 0.88112 0.86608 0.82560 0.81798 0.86171 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 8.36 71.98 0.60 -3.76 16 2 C -0.08 -2.19 2.47 -10.79 -0.03 -2.22 16 3 C -0.16 -5.12 7.50 71.98 0.54 -4.58 16 4 C -0.06 -1.88 1.35 -10.79 -0.01 -1.90 16 5 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 6 C 0.02 1.11 4.10 29.85 0.12 1.23 16 7 C -0.51 -26.18 6.65 25.60 0.17 -26.01 16 8 H 0.09 4.07 4.74 -2.91 -0.01 4.05 16 9 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 10 N -0.94 -55.77 13.29 21.45 0.28 -55.48 16 11 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 14 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 15 C -0.09 -2.32 1.81 -9.91 -0.02 -2.34 16 16 H 0.09 2.35 6.65 -2.38 -0.02 2.33 16 17 C -0.11 -1.75 4.87 31.28 0.15 -1.60 16 18 C -0.56 -7.64 7.26 72.38 0.53 -7.11 16 19 S 2.39 57.15 6.10 -56.49 -0.34 56.80 16 20 O -0.99 -31.52 18.15 -127.49 -2.31 -33.84 16 21 O -0.98 -29.81 18.15 -127.49 -2.31 -32.13 16 22 C -0.58 -15.48 5.86 72.57 0.43 -15.05 16 23 H 0.03 1.20 6.57 -2.39 -0.02 1.19 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.60 6.35 -2.38 -0.02 1.59 16 26 H 0.09 1.94 6.47 -2.39 -0.02 1.92 16 27 H 0.04 1.44 7.40 -2.39 -0.02 1.43 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 2.69 5.20 -2.39 -0.01 2.68 16 30 H 0.00 0.12 6.09 -2.39 -0.01 0.10 16 31 H -0.01 -0.60 6.81 -2.39 -0.02 -0.61 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.10 1.37 8.10 -2.38 -0.02 1.35 16 34 H 0.12 1.44 7.16 -2.39 -0.02 1.43 16 35 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.16 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.12 3.73 7.55 -2.39 -0.02 3.71 16 38 H 0.14 3.60 8.09 -2.39 -0.02 3.58 16 Total: -1.00 -72.94 298.35 1.32 -71.61 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.04 Total: 11.05 kcal Atomic # 6 Polarization: -66.08 SS G_CDS: 2.94 Total: -63.14 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.28 Total: -55.48 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -4.63 Total: -65.97 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 57.15 SS G_CDS: -0.34 Total: 56.80 kcal Total: -72.94 1.32 -71.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.757 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds