Wall clock time and date at job start Mon Mar 30 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47107 * 73.76251 * 3 2 1 5 5 C 1.36964 * 119.99993 * 269.84753 * 4 3 2 6 6 H 1.07992 * 120.00174 * 187.32646 * 5 4 3 7 7 C 1.38983 * 119.99541 * 7.33296 * 5 4 3 8 8 N 1.31402 * 120.00621 * 23.07497 * 7 5 4 9 9 Si 1.86810 * 119.99459 * 203.07348 * 7 5 4 10 10 H 1.48494 * 109.47186 * 60.00106 * 9 7 5 11 11 H 1.48497 * 109.46935 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46933 * 299.99538 * 9 7 5 13 13 C 1.34772 * 120.00093 * 89.84963 * 4 3 2 14 14 O 1.21641 * 120.00174 * 174.40916 * 13 4 3 15 15 C 1.47296 * 120.00115 * 354.69227 * 13 4 3 16 16 C 1.47033 * 127.19617 * 353.63981 * 15 13 4 17 17 C 1.34166 * 105.96014 * 179.97438 * 16 15 13 18 18 O 1.34217 * 109.14818 * 359.97438 * 17 16 15 19 19 C 1.33675 * 110.90659 * 359.75159 * 18 17 16 20 20 C 1.50703 * 125.80908 * 180.26651 * 19 18 17 21 21 C 1.52996 * 117.50001 * 8.78979 * 20 19 18 22 22 C 1.53000 * 117.49592 * 300.16705 * 20 19 18 23 23 H 1.08997 * 109.47421 * 313.75756 * 3 2 1 24 24 H 1.09004 * 109.46855 * 193.75846 * 3 2 1 25 25 H 0.97000 * 120.00526 * 180.02562 * 8 7 5 26 26 H 1.08003 * 127.02031 * 359.94579 * 16 15 13 27 27 H 1.08011 * 125.42664 * 179.97438 * 17 16 15 28 28 H 1.09003 * 115.55120 * 154.50255 * 20 19 18 29 29 H 1.08996 * 117.49955 * 0.02562 * 21 20 19 30 30 H 1.08998 * 117.50019 * 145.02598 * 21 20 19 31 31 H 1.09005 * 117.50261 * 214.98476 * 22 20 19 32 32 H 1.08999 * 117.49920 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0964 -0.3853 -1.3262 5 6 3.3283 -1.7043 -1.6134 6 1 3.7986 -1.9793 -2.5458 7 6 2.9581 -2.6887 -0.7048 8 7 2.0168 -2.4464 0.1794 9 14 3.7987 -4.3566 -0.7408 10 1 5.2548 -4.1822 -0.5073 11 1 3.2267 -5.2222 0.3216 12 1 3.5823 -4.9915 -2.0658 13 6 3.3178 0.5574 -2.2635 14 8 3.8187 0.2503 -3.3286 15 6 2.9588 1.9607 -1.9958 16 6 2.2394 2.4866 -0.8263 17 6 2.1438 3.8112 -1.0170 18 8 2.7323 4.1322 -2.1798 19 6 3.2305 3.0456 -2.7782 20 6 3.9637 3.0221 -4.0947 21 6 4.3417 4.3676 -4.7170 22 6 3.2162 3.5310 -5.3288 23 1 2.9716 -0.7099 0.7422 24 1 2.9708 0.9991 0.2444 25 1 1.7586 -3.1334 0.8138 26 1 1.8641 1.9219 0.0143 27 1 1.6689 4.5082 -0.3423 28 1 4.6558 2.1913 -4.2325 29 1 4.0604 5.2700 -4.1741 30 1 5.2826 4.4225 -5.2644 31 1 3.4167 3.0353 -6.2787 32 1 2.1940 3.8824 -5.1886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281962812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:19 Heat of formation + Delta-G solvation = 71.002099 kcal Electronic energy + Delta-G solvation = -19239.854251 eV Core-core repulsion = 16170.049457 eV Total energy + Delta-G solvation = -3069.804795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19061 -38.65573 -36.92325 -35.83216 -34.34715 -32.75775 -31.48977 -29.30052 -27.61582 -25.43760 -23.01209 -22.36481 -22.05571 -20.63232 -18.57108 -18.00420 -17.06672 -16.27833 -15.93545 -15.73263 -15.20578 -14.78783 -14.27600 -14.01215 -13.73468 -13.34385 -12.77483 -12.28766 -12.03585 -11.89100 -11.62024 -11.53257 -11.45975 -11.31577 -11.19461 -10.69107 -10.55962 -10.44328 -10.31019 -10.22244 -9.30420 -9.21678 -8.67760 -8.17621 -8.01735 -6.57135 -3.96637 1.83249 2.48011 3.12814 3.15239 3.19856 3.23273 3.64649 3.90579 4.01086 4.09341 4.26980 4.64430 4.77067 4.90210 4.98430 5.13485 5.18772 5.31491 5.46142 5.63767 5.70228 5.82011 5.92491 5.99315 6.19323 6.20104 6.37631 6.42670 6.60765 6.70192 7.40657 7.42643 7.87706 8.26195 8.73436 8.95980 9.16656 9.74238 10.47060 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025180 B = 0.006964 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.729925 B = 4019.756218 C = 4866.374902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.250 3.750 3 C 0.199 3.801 4 N -0.429 5.429 5 C -0.309 4.309 6 H 0.114 0.886 7 C 0.031 3.969 8 N -0.874 5.874 9 Si 0.930 3.070 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.517 3.483 14 O -0.576 6.576 15 C -0.197 4.197 16 C -0.211 4.211 17 C -0.047 4.047 18 O -0.182 6.182 19 C 0.071 3.929 20 C -0.068 4.068 21 C -0.178 4.178 22 C -0.164 4.164 23 H 0.133 0.867 24 H 0.100 0.900 25 H 0.276 0.724 26 H 0.167 0.833 27 H 0.203 0.797 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 10.840 -0.540 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.068 4.068 3 C 0.072 3.928 4 N -0.147 5.147 5 C -0.436 4.436 6 H 0.132 0.868 7 C -0.173 4.173 8 N -0.514 5.514 9 Si 0.756 3.244 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.307 3.693 14 O -0.461 6.461 15 C -0.202 4.202 16 C -0.230 4.230 17 C -0.113 4.113 18 O -0.079 6.079 19 C 0.019 3.981 20 C -0.086 4.086 21 C -0.214 4.214 22 C -0.201 4.201 23 H 0.150 0.850 24 H 0.117 0.883 25 H 0.086 0.914 26 H 0.184 0.816 27 H 0.219 0.781 28 H 0.168 0.832 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.642 10.810 -1.014 11.174 hybrid contribution 0.341 -1.177 0.486 1.318 sum 2.982 9.633 -0.528 10.098 Atomic orbital electron populations 1.80896 1.13544 1.12380 1.08525 1.29174 0.95311 0.89764 0.92519 1.19643 0.81607 1.02122 0.89437 1.43478 1.55523 1.06668 1.09029 1.19800 1.37753 0.79840 1.06171 0.86800 1.25280 0.95276 1.00393 0.96350 1.69888 1.24697 1.36101 1.20675 0.85916 0.79677 0.80523 0.78235 1.19576 1.20918 1.19734 1.16884 0.84861 0.83187 0.84353 1.90592 1.48731 1.81775 1.25019 1.21449 1.06903 0.95238 0.96584 1.23694 1.04173 0.94583 1.00543 1.23779 1.02696 0.96942 0.87863 1.83627 1.57997 1.35545 1.30700 1.21482 0.98494 0.83185 0.94954 1.20665 1.02065 0.99606 0.86251 1.23033 0.99917 0.94606 1.03889 1.23000 0.97293 1.03080 0.96723 0.84988 0.88314 0.91369 0.81632 0.78054 0.83153 0.88488 0.88140 0.87883 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.39 18.54 42.15 0.78 -10.61 16 2 C 0.25 5.65 11.17 -20.76 -0.23 5.42 16 3 C 0.20 4.15 4.69 -6.83 -0.03 4.12 16 4 N -0.43 -10.41 2.58 -119.20 -0.31 -10.72 16 5 C -0.31 -8.05 9.46 -14.98 -0.14 -8.19 16 6 H 0.11 3.11 7.27 -52.49 -0.38 2.72 16 7 C 0.03 0.75 4.97 -17.46 -0.09 0.66 16 8 N -0.87 -21.80 9.04 55.50 0.50 -21.30 16 9 Si 0.93 19.54 29.61 -169.99 -5.03 14.51 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.52 12.43 7.60 -12.58 -0.10 12.33 16 14 O -0.58 -15.08 14.60 5.24 0.08 -15.01 16 15 C -0.20 -4.01 6.08 -103.28 -0.63 -4.63 16 16 C -0.21 -3.63 8.35 -37.45 -0.31 -3.94 16 17 C -0.05 -0.67 12.03 29.30 0.35 -0.32 16 18 O -0.18 -2.90 10.23 7.59 0.08 -2.82 16 19 C 0.07 1.29 6.86 -34.93 -0.24 1.05 16 20 C -0.07 -1.10 5.57 -91.77 -0.51 -1.61 16 21 C -0.18 -2.17 10.17 -26.73 -0.27 -2.44 16 22 C -0.16 -2.21 10.23 -26.73 -0.27 -2.48 16 23 H 0.13 2.79 6.13 -51.93 -0.32 2.47 16 24 H 0.10 1.71 4.61 -51.93 -0.24 1.48 16 25 H 0.28 6.61 8.31 -40.82 -0.34 6.28 16 26 H 0.17 2.77 3.75 -52.48 -0.20 2.58 16 27 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 28 H 0.15 2.67 6.79 -51.93 -0.35 2.31 16 29 H 0.10 1.14 7.96 -51.93 -0.41 0.72 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -30.61 280.42 -4.88 -35.49 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -2.73 Total: 6.27 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.47 Total: -0.04 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.98 Total: -42.62 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.15 Total: -17.83 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.61 -4.88 -35.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281962812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.492 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds