Wall clock time and date at job start Mon Mar 30 2020 04:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47107 * 73.76251 * 3 2 1 5 5 C 1.36964 * 119.99993 * 269.84753 * 4 3 2 6 6 H 1.07992 * 120.00174 * 187.32646 * 5 4 3 7 7 C 1.38983 * 119.99541 * 7.33296 * 5 4 3 8 8 N 1.31402 * 120.00621 * 23.07497 * 7 5 4 9 9 Si 1.86810 * 119.99459 * 203.07348 * 7 5 4 10 10 H 1.48494 * 109.47186 * 60.00106 * 9 7 5 11 11 H 1.48497 * 109.46935 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46933 * 299.99538 * 9 7 5 13 13 C 1.34772 * 120.00093 * 89.84963 * 4 3 2 14 14 O 1.21641 * 120.00174 * 174.40916 * 13 4 3 15 15 C 1.47296 * 120.00115 * 354.69227 * 13 4 3 16 16 C 1.47033 * 127.19617 * 353.63981 * 15 13 4 17 17 C 1.34166 * 105.96014 * 179.97438 * 16 15 13 18 18 O 1.34217 * 109.14818 * 359.97438 * 17 16 15 19 19 C 1.33675 * 110.90659 * 359.75159 * 18 17 16 20 20 C 1.50703 * 125.80908 * 180.26651 * 19 18 17 21 21 C 1.52996 * 117.50001 * 8.78979 * 20 19 18 22 22 C 1.53000 * 117.49592 * 300.16705 * 20 19 18 23 23 H 1.08997 * 109.47421 * 313.75756 * 3 2 1 24 24 H 1.09004 * 109.46855 * 193.75846 * 3 2 1 25 25 H 0.97000 * 120.00526 * 180.02562 * 8 7 5 26 26 H 1.08003 * 127.02031 * 359.94579 * 16 15 13 27 27 H 1.08011 * 125.42664 * 179.97438 * 17 16 15 28 28 H 1.09003 * 115.55120 * 154.50255 * 20 19 18 29 29 H 1.08996 * 117.49955 * 0.02562 * 21 20 19 30 30 H 1.08998 * 117.50019 * 145.02598 * 21 20 19 31 31 H 1.09005 * 117.50261 * 214.98476 * 22 20 19 32 32 H 1.08999 * 117.49920 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0964 -0.3853 -1.3262 5 6 3.3283 -1.7043 -1.6134 6 1 3.7986 -1.9793 -2.5458 7 6 2.9581 -2.6887 -0.7048 8 7 2.0168 -2.4464 0.1794 9 14 3.7987 -4.3566 -0.7408 10 1 5.2548 -4.1822 -0.5073 11 1 3.2267 -5.2222 0.3216 12 1 3.5823 -4.9915 -2.0658 13 6 3.3178 0.5574 -2.2635 14 8 3.8187 0.2503 -3.3286 15 6 2.9588 1.9607 -1.9958 16 6 2.2394 2.4866 -0.8263 17 6 2.1438 3.8112 -1.0170 18 8 2.7323 4.1322 -2.1798 19 6 3.2305 3.0456 -2.7782 20 6 3.9637 3.0221 -4.0947 21 6 4.3417 4.3676 -4.7170 22 6 3.2162 3.5310 -5.3288 23 1 2.9716 -0.7099 0.7422 24 1 2.9708 0.9991 0.2444 25 1 1.7586 -3.1334 0.8138 26 1 1.8641 1.9219 0.0143 27 1 1.6689 4.5082 -0.3423 28 1 4.6558 2.1913 -4.2325 29 1 4.0604 5.2700 -4.1741 30 1 5.2826 4.4225 -5.2644 31 1 3.4167 3.0353 -6.2787 32 1 2.1940 3.8824 -5.1886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281962812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:18 Heat of formation + Delta-G solvation = 52.645673 kcal Electronic energy + Delta-G solvation = -19240.650246 eV Core-core repulsion = 16170.049457 eV Total energy + Delta-G solvation = -3070.600789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.51939 -40.44691 -38.13121 -37.59200 -36.21602 -34.36057 -33.20123 -30.61552 -29.37190 -27.24324 -24.43477 -23.60369 -23.24578 -22.08147 -20.06537 -19.79850 -18.60231 -17.99101 -17.45273 -17.06971 -16.61278 -16.25109 -15.96342 -15.54850 -15.21165 -15.11936 -14.44780 -13.88305 -13.63207 -13.53150 -13.21555 -13.11527 -13.01443 -12.90537 -12.41853 -12.33232 -12.12801 -12.04549 -11.83820 -11.37350 -11.13316 -10.68043 -10.52108 -10.04839 -9.35314 -8.46625 -5.94592 0.41977 1.14418 1.44748 1.47677 1.56317 1.83777 1.89624 2.14605 2.32336 2.43396 2.91405 3.01097 3.12540 3.48513 3.57116 3.82986 3.94877 4.03571 4.09540 4.26170 4.46286 4.58329 4.73425 4.80191 4.88826 4.91184 5.12769 5.16028 5.22949 5.39723 5.43770 5.91227 6.15027 6.37959 6.92963 7.04764 7.29424 7.88325 8.55744 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.025180 B = 0.006964 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.729925 B = 4019.756218 C = 4866.374902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.263 3.737 3 C 0.204 3.796 4 N -0.443 5.443 5 C -0.346 4.346 6 H 0.088 0.912 7 C 0.006 3.994 8 N -0.888 5.888 9 Si 0.992 3.008 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.509 3.491 14 O -0.612 6.612 15 C -0.241 4.241 16 C -0.234 4.234 17 C -0.015 4.015 18 O -0.173 6.173 19 C 0.083 3.917 20 C -0.110 4.110 21 C -0.141 4.141 22 C -0.160 4.160 23 H 0.129 0.871 24 H 0.137 0.863 25 H 0.279 0.721 26 H 0.168 0.832 27 H 0.257 0.743 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 12.823 0.032 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.054 4.054 3 C 0.077 3.923 4 N -0.161 5.161 5 C -0.472 4.472 6 H 0.106 0.894 7 C -0.197 4.197 8 N -0.527 5.527 9 Si 0.815 3.185 10 H -0.187 1.187 11 H -0.198 1.198 12 H -0.206 1.206 13 C 0.302 3.698 14 O -0.499 6.499 15 C -0.245 4.245 16 C -0.253 4.253 17 C -0.080 4.080 18 O -0.069 6.069 19 C 0.030 3.970 20 C -0.128 4.128 21 C -0.178 4.178 22 C -0.197 4.197 23 H 0.147 0.853 24 H 0.154 0.846 25 H 0.089 0.911 26 H 0.185 0.815 27 H 0.273 0.727 28 H 0.142 0.858 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.132 0.868 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.743 12.813 -0.418 13.110 hybrid contribution 0.295 -1.695 0.254 1.739 sum 3.038 11.118 -0.165 11.527 Atomic orbital electron populations 1.80884 1.14346 1.13549 1.09460 1.29467 0.95569 0.88784 0.91598 1.19847 0.80566 1.04022 0.87823 1.43602 1.55981 1.06230 1.10264 1.19715 1.39714 0.81452 1.06353 0.89389 1.25939 0.95112 1.03061 0.95545 1.69955 1.24807 1.37093 1.20809 0.85014 0.79045 0.76576 0.77835 1.18729 1.19848 1.20553 1.17523 0.83715 0.84806 0.83804 1.90543 1.50083 1.82883 1.26433 1.21294 1.10032 0.93742 0.99471 1.23652 1.05585 0.95935 1.00162 1.24701 0.99804 0.96684 0.86829 1.83680 1.57619 1.34421 1.31167 1.21720 0.97210 0.83084 0.95005 1.20624 1.03663 1.01665 0.86819 1.23160 1.00282 0.92591 1.01750 1.23113 0.97885 1.02945 0.95774 0.85321 0.84637 0.91077 0.81521 0.72744 0.85774 0.87224 0.85799 0.86848 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.10 18.54 20.01 0.37 -23.73 16 2 C 0.26 11.90 11.17 89.44 1.00 12.90 16 3 C 0.20 8.54 4.69 84.57 0.40 8.94 16 4 N -0.44 -22.19 2.58 -649.27 -1.68 -23.86 16 5 C -0.35 -18.71 9.46 84.07 0.80 -17.92 16 6 H 0.09 5.10 7.27 -2.91 -0.02 5.08 16 7 C 0.01 0.29 4.97 84.94 0.42 0.71 16 8 N -0.89 -44.44 9.04 21.67 0.20 -44.24 16 9 Si 0.99 40.42 29.61 68.60 2.03 42.45 16 10 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 11 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.51 25.46 7.60 86.63 0.66 26.12 16 14 O -0.61 -33.86 14.60 -4.16 -0.06 -33.92 16 15 C -0.24 -9.81 6.08 -18.99 -0.12 -9.93 16 16 C -0.23 -7.67 8.35 23.65 0.20 -7.47 16 17 C -0.01 -0.37 12.03 66.89 0.80 0.43 16 18 O -0.17 -4.98 10.23 4.24 0.04 -4.94 16 19 C 0.08 2.92 6.86 25.28 0.17 3.09 16 20 C -0.11 -3.49 5.57 -11.54 -0.06 -3.55 16 21 C -0.14 -3.06 10.17 30.59 0.31 -2.75 16 22 C -0.16 -4.07 10.23 30.59 0.31 -3.75 16 23 H 0.13 5.48 6.13 -2.39 -0.01 5.46 16 24 H 0.14 4.64 4.61 -2.38 -0.01 4.63 16 25 H 0.28 13.28 8.31 -92.71 -0.77 12.51 16 26 H 0.17 5.34 3.75 -2.91 -0.01 5.32 16 27 H 0.26 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.12 4.61 6.79 -2.39 -0.02 4.60 16 29 H 0.11 2.14 7.96 -2.39 -0.02 2.12 16 30 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 31 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -68.79 280.42 6.97 -61.82 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 1.18 Total: 19.61 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.89 Total: 6.82 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -1.11 Total: -91.84 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.02 Total: -38.86 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -68.79 6.97 -61.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281962812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.467 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds