Wall clock time and date at job start Mon Mar 30 2020 04:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48497 * 109.47178 * 269.99349 * 3 2 1 5 5 H 1.48498 * 109.47565 * 29.99992 * 3 2 1 6 6 H 1.48505 * 109.46956 * 149.99737 * 3 2 1 7 7 C 1.37870 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00184 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99989 * 179.97438 * 7 2 1 10 10 O 1.42097 * 106.39975 * 66.46530 * 9 7 2 11 11 O 1.42098 * 106.40287 * 293.54615 * 9 7 2 12 12 N 1.65605 * 107.21711 * 180.02562 * 9 7 2 13 13 C 1.46568 * 119.59398 * 270.02481 * 12 9 7 14 14 C 1.52731 * 110.93677 * 133.33416 * 13 12 9 15 15 C 1.51528 * 107.71798 * 50.42552 * 14 13 12 16 16 H 1.09007 * 110.25756 * 54.69497 * 15 14 13 17 17 C 1.52400 * 117.06895 * 181.27520 * 15 14 13 18 18 N 1.48600 * 105.88957 * 145.31073 * 17 15 14 19 19 C 1.49009 * 108.31016 * 356.94976 * 18 17 15 20 20 C 1.53165 * 103.48435 * 335.60697 * 19 18 17 21 21 H 1.08996 * 110.91373 * 283.62317 * 20 19 18 22 22 C 1.47834 * 119.60072 * 90.00476 * 12 9 7 23 23 H 0.97006 * 119.99921 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.20141 * 253.39454 * 13 12 9 25 25 H 1.08990 * 109.20651 * 12.69676 * 13 12 9 26 26 H 1.09005 * 109.20044 * 291.06542 * 14 13 12 27 27 H 1.08994 * 110.02377 * 170.25423 * 14 13 12 28 28 H 1.09000 * 110.16541 * 264.41743 * 17 15 14 29 29 H 1.09000 * 110.16482 * 26.20484 * 17 15 14 30 30 H 1.00900 * 110.99822 * 119.04540 * 18 17 15 31 31 H 1.09000 * 110.61771 * 217.10620 * 19 18 17 32 32 H 1.08999 * 110.75520 * 94.17148 * 19 18 17 33 33 H 1.08999 * 110.12665 * 112.37466 * 22 12 9 34 34 H 1.09007 * 110.12451 * 350.64551 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7666 -1.1940 -0.0001 10 8 4.1683 -0.6489 1.2491 11 8 4.1674 -0.6503 -1.2503 12 7 4.2567 -2.7759 0.0000 13 6 4.4710 -3.4671 1.2746 14 6 3.8116 -4.8448 1.2658 15 6 4.2543 -5.5599 0.0054 16 1 5.3426 -5.5836 -0.0527 17 6 3.6917 -6.9559 -0.2339 18 7 3.5205 -7.0789 -1.7049 19 6 3.8925 -5.7783 -2.3298 20 6 3.6761 -4.7651 -1.2018 21 1 2.6150 -4.5582 -1.0630 22 6 4.4725 -3.4736 -1.2853 23 1 -0.4850 0.8401 -0.0004 24 1 5.5414 -3.5886 1.4411 25 1 4.0488 -2.8692 2.0821 26 1 2.7283 -4.7237 1.2634 27 1 4.1212 -5.4123 2.1433 28 1 4.3911 -7.7099 0.1274 29 1 2.7296 -7.0642 0.2668 30 1 4.0836 -7.8310 -2.0728 31 1 3.2398 -5.5577 -3.1744 32 1 4.9361 -5.7854 -2.6444 33 1 5.5315 -3.6940 -1.4193 34 1 4.1082 -2.8612 -2.1103 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309138676.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:24 Heat of formation + Delta-G solvation = -98.478906 kcal Electronic energy + Delta-G solvation = -18769.197027 eV Core-core repulsion = 15827.486936 eV Total energy + Delta-G solvation = -2941.710091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84917 -37.78779 -36.93398 -36.51307 -35.20186 -33.04193 -31.48562 -28.73771 -28.56088 -25.28132 -23.51415 -21.80732 -21.37878 -20.43185 -19.34657 -18.62259 -17.32059 -17.23276 -16.67160 -16.06050 -15.66190 -15.46972 -15.10518 -15.00623 -14.73282 -14.51723 -13.80997 -13.65613 -13.55266 -13.43446 -13.18553 -12.90225 -12.69647 -12.55614 -12.40443 -12.01712 -11.89840 -11.73539 -11.52843 -11.35769 -11.19484 -11.00418 -9.86095 -9.34844 -8.98348 -7.53964 0.08421 1.02116 1.11538 1.18629 1.86595 2.36812 2.40855 3.27123 3.34489 3.43054 3.69773 3.82599 3.98084 4.16045 4.28692 4.41296 4.43523 4.49695 4.59933 4.63728 4.76785 4.81070 4.89209 4.98058 4.99994 5.14800 5.20903 5.29185 5.39100 5.50968 5.82717 5.87047 5.99701 6.51988 6.57500 8.19729 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.033042 B = 0.007304 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.193333 B = 3832.463833 C = 3973.378453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.107 3.893 3 Si 0.824 3.176 4 H -0.239 1.239 5 H -0.219 1.219 6 H -0.228 1.228 7 C -1.037 5.037 8 H 0.100 0.900 9 S 2.693 3.307 10 O -1.025 7.025 11 O -1.027 7.027 12 N -0.998 5.998 13 C 0.116 3.884 14 C -0.113 4.113 15 C -0.106 4.106 16 H 0.092 0.908 17 C 0.058 3.942 18 N -0.695 5.695 19 C 0.060 3.940 20 C -0.121 4.121 21 H 0.060 0.940 22 C 0.133 3.867 23 H 0.291 0.709 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.350 0.650 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 -13.012 -0.569 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.109 4.109 3 Si 0.641 3.359 4 H -0.162 1.162 5 H -0.141 1.141 6 H -0.151 1.151 7 C -1.169 5.169 8 H 0.118 0.882 9 S 2.794 3.206 10 O -1.016 7.016 11 O -1.017 7.017 12 N -0.837 5.837 13 C -0.008 4.008 14 C -0.153 4.153 15 C -0.126 4.126 16 H 0.110 0.890 17 C -0.071 4.071 18 N -0.325 5.325 19 C -0.070 4.070 20 C -0.142 4.142 21 H 0.079 0.921 22 C 0.008 3.992 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.167 0.833 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.550 -12.088 -0.558 15.416 hybrid contribution -0.153 0.665 0.064 0.685 sum 9.397 -11.424 -0.494 14.800 Atomic orbital electron populations 1.70028 1.07512 1.30433 1.40564 1.25201 0.95630 1.01490 0.88599 0.87499 0.82925 0.82795 0.82648 1.16200 1.14057 1.15062 1.31090 1.18356 1.01321 1.66158 0.88220 1.00717 0.75652 0.71918 0.72304 1.93416 1.84925 1.77365 1.45851 1.93359 1.84944 1.77496 1.45901 1.57414 1.83945 1.30189 1.12141 1.21326 1.01738 0.94326 0.83450 1.21430 1.00318 0.94510 0.99004 1.22061 1.01025 0.94771 0.94724 0.89020 1.22323 1.00670 0.95410 0.88685 1.62488 1.59838 1.05774 1.04411 1.22515 1.00447 0.87991 0.96007 1.22411 0.99650 0.94729 0.97390 0.92145 1.21356 1.00925 0.93099 0.83816 0.89875 0.89681 0.90882 0.93010 0.87522 0.90044 0.91748 0.83307 0.90556 0.91163 0.88602 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.59 13.96 21.45 0.30 -50.29 16 2 C 0.11 6.30 5.47 84.65 0.46 6.76 16 3 Si 0.82 41.78 26.54 68.60 1.82 43.60 16 4 H -0.24 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.22 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.23 -11.84 5.60 99.48 0.56 -11.28 16 7 C -1.04 -59.83 10.29 67.73 0.70 -59.13 16 8 H 0.10 5.97 8.06 -2.91 -0.02 5.95 16 9 S 2.69 135.92 4.12 -56.49 -0.23 135.69 16 10 O -1.03 -54.85 14.71 -128.00 -1.88 -56.73 16 11 O -1.03 -54.71 15.51 -128.00 -1.99 -56.69 16 12 N -1.00 -38.23 3.32 -514.74 -1.71 -39.93 16 13 C 0.12 3.66 6.20 86.28 0.53 4.19 16 14 C -0.11 -2.86 5.71 30.02 0.17 -2.69 16 15 C -0.11 -2.38 2.30 -10.55 -0.02 -2.40 16 16 H 0.09 1.74 8.00 -2.38 -0.02 1.72 16 17 C 0.06 1.12 7.29 85.78 0.63 1.75 16 18 N -0.69 -14.16 7.47 -505.38 -3.78 -17.93 16 19 C 0.06 1.32 7.22 85.95 0.62 1.94 16 20 C -0.12 -3.41 2.69 -10.16 -0.03 -3.43 16 21 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 22 C 0.13 4.24 6.00 85.78 0.51 4.76 16 23 H 0.29 15.47 8.31 -92.70 -0.77 14.70 16 24 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 25 H 0.07 2.56 7.15 -2.39 -0.02 2.54 16 26 H 0.05 1.55 8.05 -2.38 -0.02 1.53 16 27 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 30 H 0.35 5.24 8.93 -89.69 -0.80 4.44 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 2.43 8.08 -2.39 -0.02 2.41 16 34 H 0.08 2.73 7.16 -2.38 -0.02 2.71 16 Total: -1.00 -70.44 279.16 -3.74 -74.18 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.15 Total: 16.39 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 3.57 Total: -48.27 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -5.18 Total: -108.16 kcal Atomic # 8 Polarization: -109.56 SS G_CDS: -3.87 Total: -113.42 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.82 Total: 43.60 kcal Atomic # 16 Polarization: 135.92 SS G_CDS: -0.23 Total: 135.69 kcal Total: -70.44 -3.74 -74.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309138676.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.299 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds