Wall clock time and date at job start Mon Mar 30 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48492 * 109.47384 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46863 * 119.99667 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41400 * 119.99539 * 17.85436 * 7 2 1 10 10 C 1.40720 * 120.24537 * 24.39535 * 9 7 2 11 11 C 1.37615 * 119.74367 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25185 * 0.27407 * 11 10 9 13 13 C 1.50699 * 119.75289 * 179.70401 * 12 11 10 14 14 N 1.46506 * 109.47016 * 89.99742 * 13 12 11 15 15 C 1.34776 * 119.99808 * 180.02562 * 14 13 12 16 16 O 1.21591 * 119.99747 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99859 * 180.02562 * 15 14 13 18 18 C 1.47059 * 136.05795 * 359.62285 * 17 15 14 19 19 C 1.53238 * 88.08713 * 207.20599 * 18 17 15 20 20 C 1.47065 * 136.05594 * 180.02562 * 17 15 14 21 21 C 1.38637 * 120.49605 * 359.44024 * 12 11 10 22 22 C 1.37614 * 120.25085 * 0.55928 * 21 12 11 23 23 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.12205 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.87216 * 179.97438 * 11 10 9 26 26 H 1.08995 * 109.47407 * 209.99698 * 13 12 11 27 27 H 1.09000 * 109.46523 * 329.99904 * 13 12 11 28 28 H 0.96998 * 119.99824 * 359.97438 * 14 13 12 29 29 H 1.08997 * 113.47221 * 321.94077 * 18 17 15 30 30 H 1.09002 * 113.46748 * 92.38120 * 18 17 15 31 31 H 1.08998 * 114.33041 * 220.47231 * 19 18 17 32 32 H 1.09004 * 114.01376 * 87.71547 * 19 18 17 33 33 H 1.09002 * 113.46630 * 267.62031 * 20 17 15 34 34 H 1.09006 * 113.46868 * 38.05621 * 20 17 15 35 35 H 1.08007 * 119.87424 * 180.26009 * 21 12 11 36 36 H 1.08006 * 120.12966 * 179.69993 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0615 -4.7495 -1.1084 13 6 -0.6419 -6.0224 -1.5032 14 7 -0.0546 -6.5411 -2.7412 15 6 -0.5280 -7.6790 -3.2865 16 8 -1.4423 -8.2753 -2.7508 17 7 0.0126 -8.1564 -4.4250 18 6 1.0832 -7.7418 -5.3440 19 6 0.3407 -8.4824 -6.4613 20 6 -0.2133 -9.3175 -5.2989 21 6 1.1786 -4.8064 -0.2893 22 6 1.8252 -3.6500 0.0826 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1513 -1.4129 -1.5699 25 1 -1.2786 -3.4984 -2.2125 26 1 -0.5286 -6.7612 -0.7100 27 1 -1.7009 -5.8182 -1.6612 28 1 0.6746 -6.0651 -3.1686 29 1 1.1307 -6.6637 -5.4969 30 1 2.0534 -8.1773 -5.1048 31 1 0.9886 -9.0362 -7.1407 32 1 -0.4078 -7.8776 -6.9732 33 1 0.4077 -10.1773 -5.0475 34 1 -1.2660 -9.5764 -5.4134 35 1 1.5398 -5.7616 0.0623 36 1 2.6924 -3.6962 0.7248 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335469231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:57 Heat of formation + Delta-G solvation = 21.896495 kcal Electronic energy + Delta-G solvation = -18375.753272 eV Core-core repulsion = 15439.652193 eV Total energy + Delta-G solvation = -2936.101079 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27126 -38.20935 -37.42337 -34.62877 -33.37750 -30.70552 -29.44832 -29.19268 -26.68963 -25.97718 -23.70262 -22.02499 -21.06867 -20.08645 -19.43475 -17.91928 -17.38921 -16.34067 -15.99816 -15.41554 -14.66053 -14.61141 -13.96255 -13.64800 -13.63312 -13.31888 -12.74885 -12.69320 -12.53176 -12.04558 -11.98552 -11.64922 -11.57431 -11.18235 -11.12118 -10.89807 -10.60600 -10.55432 -9.92519 -9.69381 -9.48121 -9.22391 -8.87278 -8.35676 -7.57071 -7.45470 -6.86746 -4.46591 2.43485 2.81432 2.98599 3.01266 3.03180 3.15039 3.47043 3.84994 4.12281 4.27678 4.58030 4.82089 4.98349 5.24039 5.29866 5.41675 5.50702 5.59929 5.64989 5.87912 5.94718 5.98792 6.26204 6.33136 6.37960 6.86885 6.95226 6.97761 7.18715 7.26984 7.43342 7.51409 7.75337 7.95232 8.02521 8.19384 8.31047 8.53631 8.78559 8.86647 8.88970 10.07292 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.003740 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.377105 B = 7484.678992 C = 7755.892845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.170 4.170 11 C -0.080 4.080 12 C -0.244 4.244 13 C 0.203 3.797 14 N -0.731 5.731 15 C 0.728 3.272 16 O -0.598 6.598 17 N -0.673 5.673 18 C 0.099 3.901 19 C -0.156 4.156 20 C 0.124 3.876 21 C -0.069 4.069 22 C -0.230 4.230 23 H 0.283 0.717 24 H 0.118 0.882 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.395 0.605 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -8.966 -10.616 14.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.189 4.189 11 C -0.099 4.099 12 C -0.246 4.246 13 C 0.081 3.919 14 N -0.384 5.384 15 C 0.431 3.569 16 O -0.478 6.478 17 N -0.414 5.414 18 C -0.025 4.025 19 C -0.194 4.194 20 C 0.000 4.000 21 C -0.088 4.088 22 C -0.250 4.250 23 H 0.094 0.906 24 H 0.136 0.864 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.229 0.771 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.707 -9.134 -9.931 13.600 hybrid contribution 0.746 1.045 -0.035 1.285 sum 2.453 -8.089 -9.966 13.068 Atomic orbital electron populations 1.69816 1.07658 1.29582 1.34078 1.25953 0.94744 1.01472 0.92126 0.86340 0.80165 0.80039 0.80064 1.18737 1.20247 1.18921 1.19631 0.98220 0.91326 1.39697 0.90308 1.17665 0.90869 0.92027 0.87996 1.21312 0.99495 0.96752 1.01370 1.20568 0.98085 0.92592 0.98682 1.19002 1.02453 0.92624 1.10543 1.19822 0.95740 0.92948 0.83437 1.45673 1.39760 1.24893 1.28117 1.15472 0.81851 0.81363 0.78213 1.90887 1.32548 1.61509 1.62821 1.48759 1.38723 1.28765 1.25135 1.22867 0.92033 1.01002 0.86589 1.23343 1.00673 0.99432 0.95911 1.22724 1.01898 0.89734 0.85604 1.20414 0.94806 0.96503 0.97056 1.20965 1.04010 0.92821 1.07180 0.90608 0.86379 0.89390 0.92614 0.92541 0.77126 0.90600 0.90071 0.89328 0.88848 0.90354 0.90693 0.89390 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.81 10.95 55.55 0.61 -19.20 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.82 9.05 -37.74 -0.34 -12.16 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 9 C 0.12 3.02 5.58 -106.82 -0.60 2.43 16 10 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 11 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 12 C -0.24 -5.19 5.27 -104.33 -0.55 -5.74 16 13 C 0.20 3.90 5.79 -5.19 -0.03 3.87 16 14 N -0.73 -12.67 5.55 -66.41 -0.37 -13.04 16 15 C 0.73 13.06 8.79 -86.92 -0.76 12.30 16 16 O -0.60 -13.04 17.12 5.29 0.09 -12.94 16 17 N -0.67 -9.15 3.69 -191.26 -0.71 -9.86 16 18 C 0.10 0.91 8.27 -8.65 -0.07 0.84 16 19 C -0.16 -1.11 8.48 -26.36 -0.22 -1.33 16 20 C 0.12 1.24 8.61 -8.53 -0.07 1.16 16 21 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 22 C -0.23 -5.47 9.80 -38.87 -0.38 -5.86 16 23 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 24 H 0.12 3.07 6.15 -52.49 -0.32 2.75 16 25 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.06 1.08 8.08 -51.93 -0.42 0.67 16 27 H 0.06 1.11 8.08 -51.93 -0.42 0.70 16 28 H 0.40 6.29 8.18 -40.82 -0.33 5.96 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.09 2.09 8.06 -52.48 -0.42 1.66 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -30.07 310.77 -9.80 -39.87 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.85 Total: 8.92 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -4.23 Total: -11.44 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.47 Total: -42.10 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.07 -9.80 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335469231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.764 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds