Wall clock time and date at job start Mon Mar 30 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48492 * 109.47384 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46863 * 119.99667 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41400 * 119.99539 * 17.85436 * 7 2 1 10 10 C 1.40720 * 120.24537 * 24.39535 * 9 7 2 11 11 C 1.37615 * 119.74367 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25185 * 0.27407 * 11 10 9 13 13 C 1.50699 * 119.75289 * 179.70401 * 12 11 10 14 14 N 1.46506 * 109.47016 * 89.99742 * 13 12 11 15 15 C 1.34776 * 119.99808 * 180.02562 * 14 13 12 16 16 O 1.21591 * 119.99747 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99859 * 180.02562 * 15 14 13 18 18 C 1.47059 * 136.05795 * 359.62285 * 17 15 14 19 19 C 1.53238 * 88.08713 * 207.20599 * 18 17 15 20 20 C 1.47065 * 136.05594 * 180.02562 * 17 15 14 21 21 C 1.38637 * 120.49605 * 359.44024 * 12 11 10 22 22 C 1.37614 * 120.25085 * 0.55928 * 21 12 11 23 23 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.12205 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.87216 * 179.97438 * 11 10 9 26 26 H 1.08995 * 109.47407 * 209.99698 * 13 12 11 27 27 H 1.09000 * 109.46523 * 329.99904 * 13 12 11 28 28 H 0.96998 * 119.99824 * 359.97438 * 14 13 12 29 29 H 1.08997 * 113.47221 * 321.94077 * 18 17 15 30 30 H 1.09002 * 113.46748 * 92.38120 * 18 17 15 31 31 H 1.08998 * 114.33041 * 220.47231 * 19 18 17 32 32 H 1.09004 * 114.01376 * 87.71547 * 19 18 17 33 33 H 1.09002 * 113.46630 * 267.62031 * 20 17 15 34 34 H 1.09006 * 113.46868 * 38.05621 * 20 17 15 35 35 H 1.08007 * 119.87424 * 180.26009 * 21 12 11 36 36 H 1.08006 * 120.12966 * 179.69993 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0615 -4.7495 -1.1084 13 6 -0.6419 -6.0224 -1.5032 14 7 -0.0546 -6.5411 -2.7412 15 6 -0.5280 -7.6790 -3.2865 16 8 -1.4423 -8.2753 -2.7508 17 7 0.0126 -8.1564 -4.4250 18 6 1.0832 -7.7418 -5.3440 19 6 0.3407 -8.4824 -6.4613 20 6 -0.2133 -9.3175 -5.2989 21 6 1.1786 -4.8064 -0.2893 22 6 1.8252 -3.6500 0.0826 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1513 -1.4129 -1.5699 25 1 -1.2786 -3.4984 -2.2125 26 1 -0.5286 -6.7612 -0.7100 27 1 -1.7009 -5.8182 -1.6612 28 1 0.6746 -6.0651 -3.1686 29 1 1.1307 -6.6637 -5.4969 30 1 2.0534 -8.1773 -5.1048 31 1 0.9886 -9.0362 -7.1407 32 1 -0.4078 -7.8776 -6.9732 33 1 0.4077 -10.1773 -5.0475 34 1 -1.2660 -9.5764 -5.4134 35 1 1.5398 -5.7616 0.0623 36 1 2.6924 -3.6962 0.7248 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335469231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:56 Heat of formation + Delta-G solvation = 3.773755 kcal Electronic energy + Delta-G solvation = -18376.539133 eV Core-core repulsion = 15439.652193 eV Total energy + Delta-G solvation = -2936.886940 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37441 -39.71350 -38.89124 -36.29744 -35.06314 -32.31486 -31.22146 -30.52570 -28.26726 -26.82582 -25.33269 -23.07287 -22.89978 -21.83863 -20.60313 -19.25103 -19.00658 -17.39470 -17.25793 -17.13368 -16.16897 -16.01086 -15.65453 -15.25142 -15.09769 -14.54163 -14.21191 -13.85844 -13.75211 -13.46122 -13.43184 -13.30688 -12.93590 -12.75480 -12.39922 -12.36499 -12.17273 -11.64023 -11.52035 -11.33891 -11.26521 -11.02345 -10.24354 -9.50848 -9.41528 -9.31396 -8.67811 -6.38391 0.79537 1.11596 1.38607 1.44525 1.51113 1.69458 2.12421 2.19672 2.66511 3.09857 3.52038 3.72696 4.09103 4.16563 4.27469 4.31099 4.49104 4.52034 4.60846 4.62728 4.64038 4.76684 4.88635 5.01877 5.02564 5.13371 5.33054 5.34280 5.41122 5.51347 5.66664 5.88778 6.06764 6.18537 6.28271 6.34193 6.65854 6.90101 6.98230 7.04628 7.55243 8.28703 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036056 B = 0.003740 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.377105 B = 7484.678992 C = 7755.892845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.191 4.191 11 C -0.081 4.081 12 C -0.229 4.229 13 C 0.213 3.787 14 N -0.726 5.726 15 C 0.720 3.280 16 O -0.646 6.646 17 N -0.683 5.683 18 C 0.093 3.907 19 C -0.131 4.131 20 C 0.113 3.887 21 C -0.067 4.067 22 C -0.243 4.243 23 H 0.290 0.710 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.403 0.597 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 -9.667 -12.080 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.211 4.211 11 C -0.100 4.100 12 C -0.231 4.231 13 C 0.090 3.910 14 N -0.380 5.380 15 C 0.423 3.577 16 O -0.529 6.529 17 N -0.422 5.422 18 C -0.029 4.029 19 C -0.168 4.168 20 C -0.010 4.010 21 C -0.085 4.085 22 C -0.262 4.262 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.238 0.762 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.923 -9.858 -11.451 15.390 hybrid contribution 0.350 1.085 0.345 1.191 sum 3.274 -8.773 -11.106 14.527 Atomic orbital electron populations 1.69870 1.09107 1.30845 1.34745 1.26797 0.95461 1.04649 0.91072 0.85234 0.78780 0.75471 0.80151 1.18292 1.19276 1.18362 1.19900 0.98554 0.92520 1.41602 0.90301 1.18001 0.91604 0.93097 0.88762 1.21262 1.00339 0.96944 1.02518 1.20737 0.98255 0.92410 0.98622 1.19173 1.01764 0.92956 1.09193 1.19569 0.95178 0.91836 0.84407 1.45360 1.39911 1.25143 1.27602 1.15634 0.81707 0.81129 0.79189 1.90843 1.34689 1.62707 1.64647 1.48997 1.39432 1.30034 1.23785 1.23218 0.91997 1.01724 0.85926 1.23275 1.00330 0.98226 0.94986 1.23101 1.02050 0.89872 0.85949 1.20666 0.94445 0.96990 0.96422 1.21155 1.04602 0.92924 1.07540 0.89959 0.88013 0.87964 0.92615 0.93176 0.76206 0.90441 0.87991 0.85661 0.88955 0.88437 0.91777 0.86793 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.22 10.95 21.83 0.24 -41.98 16 2 C 0.04 1.77 5.14 85.26 0.44 2.21 16 3 Si 0.98 37.07 29.60 68.60 2.03 39.10 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.50 -26.16 9.05 23.46 0.21 -25.94 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.09 4.64 5.58 -21.29 -0.12 4.52 16 10 C -0.19 -9.84 8.70 22.73 0.20 -9.64 16 11 C -0.08 -3.69 9.67 22.22 0.21 -3.48 16 12 C -0.23 -9.56 5.27 -19.67 -0.10 -9.67 16 13 C 0.21 8.02 5.79 85.63 0.50 8.51 16 14 N -0.73 -24.38 5.55 -482.29 -2.68 -27.06 16 15 C 0.72 25.27 8.79 179.05 1.57 26.85 16 16 O -0.65 -28.16 17.12 -4.00 -0.07 -28.23 16 17 N -0.68 -17.34 3.69 -877.29 -3.24 -20.58 16 18 C 0.09 1.43 8.27 83.09 0.69 2.12 16 19 C -0.13 -1.39 8.48 30.83 0.26 -1.12 16 20 C 0.11 1.98 8.61 83.17 0.72 2.70 16 21 C -0.07 -2.83 9.67 22.22 0.21 -2.61 16 22 C -0.24 -11.58 9.80 22.73 0.22 -11.35 16 23 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 24 H 0.10 5.50 6.15 -2.91 -0.02 5.48 16 25 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 26 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 27 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 28 H 0.40 12.23 8.18 -92.71 -0.76 11.47 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -66.72 310.77 1.62 -65.10 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.33 Total: 30.57 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 5.01 Total: -16.92 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -5.68 Total: -89.62 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.07 Total: -28.23 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -66.72 1.62 -65.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335469231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.870 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds