Wall clock time and date at job start Mon Mar 30 2020 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39963 * 119.94802 * 2 1 4 4 C 1.35760 * 119.35533 * 180.02562 * 3 2 1 5 5 N 1.36327 * 119.15337 * 359.97438 * 4 3 2 6 6 N 1.39899 * 132.15935 * 179.97438 * 5 4 3 7 7 C 1.30688 * 109.54157 * 180.02562 * 6 5 4 8 8 C 1.40688 * 108.72860 * 0.02562 * 7 6 5 9 9 C 1.46500 * 126.54794 * 180.02562 * 8 7 6 10 10 O 1.21740 * 119.99496 * 130.08801 * 9 8 7 11 11 N 1.34769 * 119.99980 * 310.09035 * 9 8 7 12 12 C 1.46501 * 119.99812 * 184.17161 * 11 9 8 13 13 C 1.36976 * 120.00309 * 4.17336 * 11 9 8 14 14 H 1.07998 * 120.00285 * 7.55987 * 13 11 9 15 15 C 1.38949 * 119.99850 * 187.56318 * 13 11 9 16 16 N 1.31440 * 120.00407 * 8.04048 * 15 13 11 17 17 Si 1.86809 * 119.99840 * 188.03252 * 15 13 11 18 18 H 1.48495 * 109.46569 * 60.00243 * 17 15 13 19 19 H 1.48499 * 109.47038 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47098 * 300.00448 * 17 15 13 21 21 C 1.36609 * 119.72465 * 0.02562 * 5 4 3 22 22 N 1.31520 * 119.94544 * 180.02562 * 2 1 3 23 23 H 1.09006 * 109.47207 * 89.99598 * 1 2 3 24 24 H 1.09004 * 109.46860 * 209.99660 * 1 2 3 25 25 H 1.09001 * 109.47226 * 329.99972 * 1 2 3 26 26 H 1.07999 * 120.31732 * 359.75059 * 3 2 1 27 27 H 1.07998 * 120.42394 * 179.97438 * 4 3 2 28 28 H 1.08002 * 125.63207 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47065 * 354.64632 * 12 11 9 30 30 H 1.08994 * 109.47312 * 114.65114 * 12 11 9 31 31 H 1.09004 * 109.47164 * 234.65054 * 12 11 9 32 32 H 0.96992 * 119.99953 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2127 0.0000 4 6 3.5632 1.1987 -0.0005 5 7 4.2150 0.0013 -0.0005 6 7 5.5748 -0.3276 -0.0014 7 6 5.7101 -1.6275 -0.0015 8 6 4.4316 -2.2147 -0.0013 9 6 4.1301 -3.6484 -0.0007 10 8 3.3405 -4.1039 0.8061 11 7 4.7269 -4.4628 -0.8933 12 6 4.3580 -5.8793 -0.9535 13 6 5.6785 -3.9662 -1.7443 14 1 6.0389 -2.9557 -1.6209 15 6 6.1801 -4.7626 -2.7665 16 7 5.6336 -5.9314 -3.0174 17 14 7.6310 -4.1722 -3.7843 18 1 8.8002 -3.9494 -2.8965 19 1 7.9708 -5.1976 -4.8033 20 1 7.2748 -2.9000 -4.4625 21 6 3.4969 -1.1608 -0.0005 22 7 2.1635 -1.1396 -0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6700 2.1505 -0.0041 27 1 4.1197 2.1243 -0.0010 28 1 6.6483 -2.1624 -0.0018 29 1 3.6626 -6.1082 -0.1459 30 1 3.8841 -6.0909 -1.9119 31 1 5.2528 -6.4927 -0.8473 32 1 5.9840 -6.4875 -3.7307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340719238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:53 Heat of formation + Delta-G solvation = 104.512554 kcal Electronic energy + Delta-G solvation = -19140.425848 eV Core-core repulsion = 16104.366926 eV Total energy + Delta-G solvation = -3036.058921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.00176 -38.49531 -37.56723 -34.65300 -33.82151 -31.94190 -31.32676 -29.45007 -28.06304 -26.30143 -24.62371 -23.62963 -22.27833 -21.51981 -19.20687 -18.24605 -17.03822 -16.80627 -15.98050 -15.53383 -15.08426 -14.33055 -14.13731 -14.03965 -13.68214 -13.58877 -13.28665 -12.70388 -12.47205 -12.31363 -11.66846 -11.61806 -11.38162 -11.05935 -11.00251 -10.80083 -10.61780 -10.41420 -10.23356 -9.50278 -9.12344 -9.09552 -8.42598 -7.83390 -7.35852 -6.24264 -3.82857 0.73041 1.09152 2.33226 2.84041 3.14156 3.19877 3.21348 3.55850 3.99316 4.04398 4.14949 4.34436 4.48899 4.91508 5.08926 5.17861 5.27070 5.34019 5.48946 5.52203 5.70396 5.86883 5.96914 6.23154 6.41090 6.67274 6.81287 7.06737 7.27592 7.42045 7.56339 7.74958 7.80330 8.00412 8.45459 9.11505 9.61385 10.02477 10.68436 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.006859 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.283291 B = 4081.482223 C = 4666.142044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.187 3.813 3 C -0.230 4.230 4 C 0.163 3.837 5 N -0.317 5.317 6 N -0.323 5.323 7 C 0.125 3.875 8 C -0.211 4.211 9 C 0.526 3.474 10 O -0.603 6.603 11 N -0.436 5.436 12 C 0.122 3.878 13 C -0.329 4.329 14 H 0.102 0.898 15 C 0.033 3.967 16 N -0.874 5.874 17 Si 0.923 3.077 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.283 3.717 22 N -0.440 5.440 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.162 0.838 27 H 0.176 0.824 28 H 0.207 0.793 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 13.460 2.460 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.022 3.978 3 C -0.254 4.254 4 C 0.028 3.972 5 N -0.088 5.088 6 N -0.147 5.147 7 C -0.054 4.054 8 C -0.227 4.227 9 C 0.313 3.687 10 O -0.490 6.490 11 N -0.153 5.153 12 C -0.021 4.021 13 C -0.457 4.457 14 H 0.119 0.881 15 C -0.171 4.171 16 N -0.513 5.513 17 Si 0.749 3.251 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.200 1.200 21 C 0.055 3.945 22 N -0.152 5.152 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.180 0.820 27 H 0.193 0.807 28 H 0.223 0.777 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.353 13.126 2.680 14.086 hybrid contribution 0.936 0.361 -0.830 1.302 sum -3.417 13.487 1.850 14.035 Atomic orbital electron populations 1.20754 0.87426 1.04111 1.03741 1.21870 0.97781 0.87578 0.90598 1.21547 0.92476 1.00875 1.10550 1.21920 0.92584 0.88473 0.94230 1.46876 1.07685 1.06071 1.48180 1.77445 0.88780 1.16266 1.32174 1.24222 0.99016 0.89857 0.92350 1.19667 0.90005 0.94267 1.18770 1.16494 0.84026 0.83724 0.84413 1.90642 1.39844 1.76227 1.42277 1.43554 1.33895 1.08115 1.29716 1.21555 0.99333 0.80673 1.00549 1.19861 1.15995 1.00227 1.09586 0.88053 1.25299 0.98892 0.95733 0.97158 1.70176 1.39571 1.10877 1.30670 0.86053 0.81182 0.78397 0.79448 1.19615 1.20695 1.19960 1.20232 0.87628 0.86289 1.00373 1.67979 1.04361 1.28436 1.14421 0.89574 0.89652 0.90086 0.82040 0.80695 0.77669 0.94374 0.90539 0.92832 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.19 36.00 0.37 -0.64 16 2 C 0.19 2.65 6.83 -82.08 -0.56 2.09 16 3 C -0.23 -2.50 9.72 -39.82 -0.39 -2.89 16 4 C 0.16 2.08 11.29 -16.44 -0.19 1.90 16 5 N -0.32 -5.80 3.86 -11.95 -0.05 -5.85 16 6 N -0.32 -6.21 12.58 30.77 0.39 -5.83 16 7 C 0.12 2.57 9.68 -17.11 -0.17 2.40 16 8 C -0.21 -5.05 5.29 -104.65 -0.55 -5.60 16 9 C 0.53 14.27 7.49 -12.93 -0.10 14.17 16 10 O -0.60 -17.80 16.45 5.15 0.08 -17.71 16 11 N -0.44 -11.87 3.02 -123.75 -0.37 -12.24 16 12 C 0.12 3.19 8.88 59.85 0.53 3.72 16 13 C -0.33 -8.64 9.13 -14.99 -0.14 -8.78 16 14 H 0.10 2.50 4.43 -52.49 -0.23 2.27 16 15 C 0.03 0.85 5.38 -17.46 -0.09 0.76 16 16 N -0.87 -23.23 9.66 55.50 0.54 -22.70 16 17 Si 0.92 19.86 29.56 -169.99 -5.03 14.83 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 C 0.28 6.16 7.90 -155.82 -1.23 4.93 16 22 N -0.44 -8.90 10.39 -8.23 -0.09 -8.98 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 26 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 27 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.21 3.76 7.38 -52.49 -0.39 3.37 16 29 H 0.04 0.98 6.91 -51.93 -0.36 0.62 16 30 H 0.08 2.07 6.71 -51.93 -0.35 1.73 16 31 H 0.05 1.39 7.46 -51.93 -0.39 1.00 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 280.33 15.07 4.22 4.22 Total: -1.00 -34.90 280.33 -5.77 -40.67 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -2.96 Total: 1.51 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -2.51 Total: 12.07 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.42 Total: -55.59 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.08 Total: -17.71 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.83 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.90 -5.77 -40.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340719238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.185 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds