Wall clock time and date at job start Mon Mar 30 2020 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39963 * 119.94802 * 2 1 4 4 C 1.35760 * 119.35533 * 180.02562 * 3 2 1 5 5 N 1.36327 * 119.15337 * 359.97438 * 4 3 2 6 6 N 1.39899 * 132.15935 * 179.97438 * 5 4 3 7 7 C 1.30688 * 109.54157 * 180.02562 * 6 5 4 8 8 C 1.40688 * 108.72860 * 0.02562 * 7 6 5 9 9 C 1.46500 * 126.54794 * 180.02562 * 8 7 6 10 10 O 1.21740 * 119.99496 * 130.08801 * 9 8 7 11 11 N 1.34769 * 119.99980 * 310.09035 * 9 8 7 12 12 C 1.46501 * 119.99812 * 184.17161 * 11 9 8 13 13 C 1.36976 * 120.00309 * 4.17336 * 11 9 8 14 14 H 1.07998 * 120.00285 * 7.55987 * 13 11 9 15 15 C 1.38949 * 119.99850 * 187.56318 * 13 11 9 16 16 N 1.31440 * 120.00407 * 8.04048 * 15 13 11 17 17 Si 1.86809 * 119.99840 * 188.03252 * 15 13 11 18 18 H 1.48495 * 109.46569 * 60.00243 * 17 15 13 19 19 H 1.48499 * 109.47038 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47098 * 300.00448 * 17 15 13 21 21 C 1.36609 * 119.72465 * 0.02562 * 5 4 3 22 22 N 1.31520 * 119.94544 * 180.02562 * 2 1 3 23 23 H 1.09006 * 109.47207 * 89.99598 * 1 2 3 24 24 H 1.09004 * 109.46860 * 209.99660 * 1 2 3 25 25 H 1.09001 * 109.47226 * 329.99972 * 1 2 3 26 26 H 1.07999 * 120.31732 * 359.75059 * 3 2 1 27 27 H 1.07998 * 120.42394 * 179.97438 * 4 3 2 28 28 H 1.08002 * 125.63207 * 180.02562 * 7 6 5 29 29 H 1.09000 * 109.47065 * 354.64632 * 12 11 9 30 30 H 1.08994 * 109.47312 * 114.65114 * 12 11 9 31 31 H 1.09004 * 109.47164 * 234.65054 * 12 11 9 32 32 H 0.96992 * 119.99953 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2057 1.2127 0.0000 4 6 3.5632 1.1987 -0.0005 5 7 4.2150 0.0013 -0.0005 6 7 5.5748 -0.3276 -0.0014 7 6 5.7101 -1.6275 -0.0015 8 6 4.4316 -2.2147 -0.0013 9 6 4.1301 -3.6484 -0.0007 10 8 3.3405 -4.1039 0.8061 11 7 4.7269 -4.4628 -0.8933 12 6 4.3580 -5.8793 -0.9535 13 6 5.6785 -3.9662 -1.7443 14 1 6.0389 -2.9557 -1.6209 15 6 6.1801 -4.7626 -2.7665 16 7 5.6336 -5.9314 -3.0174 17 14 7.6310 -4.1722 -3.7843 18 1 8.8002 -3.9494 -2.8965 19 1 7.9708 -5.1976 -4.8033 20 1 7.2748 -2.9000 -4.4625 21 6 3.4969 -1.1608 -0.0005 22 7 2.1635 -1.1396 -0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6700 2.1505 -0.0041 27 1 4.1197 2.1243 -0.0010 28 1 6.6483 -2.1624 -0.0018 29 1 3.6626 -6.1082 -0.1459 30 1 3.8841 -6.0909 -1.9119 31 1 5.2528 -6.4927 -0.8473 32 1 5.9840 -6.4875 -3.7307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340719238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:53 Heat of formation + Delta-G solvation = 79.754665 kcal Electronic energy + Delta-G solvation = -19141.499430 eV Core-core repulsion = 16104.366926 eV Total energy + Delta-G solvation = -3037.132504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.36675 -40.27639 -39.08328 -36.70719 -35.11313 -33.38251 -33.10156 -30.88224 -29.27237 -28.24323 -26.53766 -24.91563 -23.52893 -23.12340 -21.03279 -19.82891 -18.61723 -18.29614 -17.52394 -17.01069 -16.46558 -16.12583 -15.82703 -15.71215 -15.10814 -14.80892 -14.67727 -14.41270 -13.73737 -13.51295 -13.33512 -13.10417 -12.87915 -12.74125 -12.65563 -12.47251 -12.40685 -12.11750 -11.99785 -11.07743 -10.76100 -10.49349 -10.38492 -9.90973 -8.87111 -8.21179 -5.87738 -0.44563 -0.13864 1.06977 1.24665 1.44219 1.48781 1.55923 2.07776 2.28032 2.44448 2.83943 2.93435 3.20229 3.33510 3.46053 3.92478 4.11850 4.28151 4.41506 4.50853 4.61295 4.76601 4.84438 4.92211 4.94071 5.11469 5.26890 5.32213 5.40784 5.42599 5.56457 5.76504 6.32714 6.44249 6.74946 7.10656 7.59292 7.99625 8.73683 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.006859 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.283291 B = 4081.482223 C = 4666.142044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.194 3.806 3 C -0.202 4.202 4 C 0.151 3.849 5 N -0.317 5.317 6 N -0.325 5.325 7 C 0.129 3.871 8 C -0.282 4.282 9 C 0.521 3.479 10 O -0.644 6.644 11 N -0.451 5.451 12 C 0.136 3.864 13 C -0.349 4.349 14 H 0.114 0.886 15 C -0.012 4.012 16 N -0.904 5.904 17 Si 0.995 3.005 18 H -0.257 1.257 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.285 3.715 22 N -0.512 5.512 23 H 0.104 0.896 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.229 0.771 27 H 0.226 0.774 28 H 0.216 0.784 29 H 0.032 0.968 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 17.739 1.860 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.033 3.967 3 C -0.225 4.225 4 C 0.018 3.982 5 N -0.087 5.087 6 N -0.149 5.149 7 C -0.050 4.050 8 C -0.298 4.298 9 C 0.311 3.689 10 O -0.534 6.534 11 N -0.167 5.167 12 C -0.007 4.007 13 C -0.477 4.477 14 H 0.132 0.868 15 C -0.213 4.213 16 N -0.543 5.543 17 Si 0.817 3.183 18 H -0.181 1.181 19 H -0.204 1.204 20 H -0.196 1.196 21 C 0.053 3.947 22 N -0.227 5.227 23 H 0.122 0.878 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.245 0.755 27 H 0.242 0.758 28 H 0.232 0.768 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.736 17.466 2.082 18.216 hybrid contribution 0.736 -0.732 -0.602 1.200 sum -4.000 16.733 1.479 17.268 Atomic orbital electron populations 1.21016 0.84258 1.05636 1.05207 1.22957 0.99945 0.87526 0.86238 1.22310 0.91773 1.01932 1.06439 1.23117 0.93836 0.88185 0.93078 1.47129 1.07098 1.06998 1.47464 1.77337 0.89546 1.15146 1.32841 1.24233 0.98374 0.90307 0.92092 1.19397 0.92345 0.92896 1.25184 1.17043 0.83059 0.85368 0.83427 1.90563 1.41601 1.77526 1.43722 1.43792 1.34541 1.08203 1.30164 1.21328 0.98738 0.81197 0.99431 1.20281 1.16280 1.01142 1.09964 0.86821 1.26269 1.01334 0.95747 0.97953 1.70294 1.40802 1.11941 1.31274 0.84968 0.77840 0.77750 0.77725 1.18109 1.20401 1.19635 1.20229 0.88474 0.86996 0.99004 1.68058 1.03950 1.31854 1.18792 0.87819 0.91484 0.85199 0.75468 0.75768 0.76803 0.94973 0.91814 0.93257 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 10.19 71.24 0.73 -0.90 16 2 C 0.19 4.90 6.83 43.02 0.29 5.20 16 3 C -0.20 -3.22 9.72 22.11 0.22 -3.00 16 4 C 0.15 3.15 11.29 83.42 0.94 4.09 16 5 N -0.32 -11.06 3.86 -191.73 -0.74 -11.80 16 6 N -0.33 -12.26 12.58 -56.55 -0.71 -12.97 16 7 C 0.13 5.45 9.68 85.46 0.83 6.28 16 8 C -0.28 -14.04 5.29 -19.88 -0.11 -14.15 16 9 C 0.52 30.04 7.49 86.40 0.65 30.69 16 10 O -0.64 -40.59 16.45 -4.47 -0.07 -40.67 16 11 N -0.45 -25.88 3.02 -663.62 -2.01 -27.88 16 12 C 0.14 7.60 8.88 127.77 1.13 8.74 16 13 C -0.35 -18.97 9.13 84.06 0.77 -18.21 16 14 H 0.11 5.76 4.43 -2.91 -0.01 5.74 16 15 C -0.01 -0.64 5.38 84.92 0.46 -0.19 16 16 N -0.90 -49.39 9.66 21.67 0.21 -49.18 16 17 Si 0.99 40.75 29.56 68.60 2.03 42.78 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 C 0.28 12.51 7.90 134.00 1.06 13.57 16 22 N -0.51 -20.67 10.39 -179.95 -1.87 -22.54 16 23 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.13 0.79 8.09 -2.39 -0.02 0.77 16 26 H 0.23 0.64 8.06 -2.91 -0.02 0.61 16 27 H 0.23 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.22 8.12 7.38 -2.91 -0.02 8.10 16 29 H 0.03 1.77 6.91 -2.39 -0.02 1.75 16 30 H 0.06 3.67 6.71 -2.39 -0.02 3.65 16 31 H 0.05 2.72 7.46 -2.38 -0.02 2.70 16 32 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -83.59 280.33 4.96 -78.63 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.16 Total: 11.51 kcal Atomic # 6 Polarization: 25.16 SS G_CDS: 6.96 Total: 32.12 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.12 Total: -124.38 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -0.07 Total: -40.67 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -83.59 4.96 -78.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340719238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.384 kcal (2) G-P(sol) polarization free energy of solvation -83.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds