Wall clock time and date at job start Mon Mar 30 2020 04:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36866 * 119.99906 * 2 1 4 4 H 1.07999 * 119.99698 * 197.55055 * 3 2 1 5 5 C 1.39040 * 120.00413 * 17.26943 * 3 2 1 6 6 N 1.31368 * 120.00130 * 17.54089 * 5 3 2 7 7 Si 1.86805 * 120.00361 * 197.54021 * 5 3 2 8 8 H 1.48499 * 109.46907 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46966 * 120.00204 * 7 5 3 10 10 H 1.48494 * 109.47369 * 239.99985 * 7 5 3 11 11 C 1.34775 * 120.00099 * 179.97438 * 2 1 3 12 12 O 1.21609 * 120.00425 * 185.69803 * 11 2 1 13 13 C 1.47595 * 119.99834 * 5.70439 * 11 2 1 14 14 C 1.40324 * 119.88852 * 141.04800 * 13 11 2 15 15 C 1.36134 * 120.55018 * 180.02562 * 14 13 11 16 16 C 1.39933 * 119.98953 * 359.97438 * 15 14 13 17 17 N 1.34747 * 134.58721 * 180.02562 * 16 15 14 18 18 N 1.28636 * 109.29891 * 179.97438 * 17 16 15 19 19 N 1.28818 * 111.79689 * 359.97438 * 18 17 16 20 20 C 1.46493 * 125.94555 * 180.02562 * 19 18 17 21 21 C 1.37371 * 108.10651 * 0.02562 * 19 18 17 22 22 C 1.38604 * 134.88109 * 180.33233 * 21 19 18 23 23 H 1.09008 * 109.46930 * 25.40028 * 1 2 3 24 24 H 1.09000 * 109.46733 * 145.39339 * 1 2 3 25 25 H 1.08999 * 109.47282 * 265.39920 * 1 2 3 26 26 H 0.97000 * 120.00583 * 179.97438 * 6 5 3 27 27 H 1.08000 * 119.72378 * 0.02562 * 14 13 11 28 28 H 1.08006 * 120.00482 * 180.02562 * 15 14 13 29 29 H 1.08993 * 109.47337 * 90.02815 * 20 19 18 30 30 H 1.09006 * 109.47567 * 210.03243 * 20 19 18 31 31 H 1.09001 * 109.47513 * 330.02973 * 20 19 18 32 32 H 1.08001 * 120.25019 * 359.91827 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.1916 1.2070 -0.2820 5 6 1.5012 2.3623 0.3574 6 7 0.3649 2.3129 1.0148 7 14 2.2462 4.0140 -0.0970 8 1 3.5193 3.7978 -0.8302 9 1 1.2990 4.7634 -0.9609 10 1 2.5122 4.7938 1.1385 11 6 2.1389 -1.1672 0.0005 12 8 3.3505 -1.1698 0.1051 13 6 1.4064 -2.4423 -0.1260 14 6 1.9425 -3.4829 -0.8997 15 6 1.2781 -4.6644 -1.0260 16 6 0.0502 -4.8487 -0.3808 17 7 -0.8345 -5.8621 -0.3025 18 7 -1.8236 -5.5066 0.4391 19 7 -1.6812 -4.3058 0.8831 20 6 -2.6205 -3.5934 1.7528 21 6 -0.4953 -3.8094 0.3990 22 6 0.1888 -2.6109 0.5282 23 1 -0.3633 0.9284 -0.4408 24 1 -0.3633 -0.8459 -0.5837 25 1 -0.3634 -0.0824 1.0243 26 1 -0.0872 3.1340 1.2645 27 1 2.8902 -3.3454 -1.3992 28 1 1.6991 -5.4596 -1.6235 29 1 -2.3634 -3.7801 2.7954 30 1 -2.5635 -2.5238 1.5504 31 1 -3.6336 -3.9462 1.5597 32 1 -0.2215 -1.8123 1.1285 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347938414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:30 Heat of formation + Delta-G solvation = 103.737400 kcal Electronic energy + Delta-G solvation = -19045.335308 eV Core-core repulsion = 16009.242774 eV Total energy + Delta-G solvation = -3036.092534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.94952 -39.15785 -36.86898 -34.92093 -34.70509 -32.02422 -30.54681 -30.21238 -27.87318 -26.47825 -25.24743 -23.70168 -22.92655 -20.96430 -19.82114 -17.75875 -17.20321 -16.90587 -16.56796 -16.18080 -15.07190 -14.55690 -14.37305 -14.19748 -13.65376 -13.49283 -13.32561 -13.06151 -12.35134 -12.15274 -11.86539 -11.70501 -11.64415 -11.43928 -11.33890 -10.96339 -10.63026 -10.49276 -10.41093 -10.30684 -9.18094 -8.76473 -8.55965 -8.02704 -7.93961 -6.57073 -4.00218 0.68437 1.49124 2.29148 2.41981 3.04428 3.15656 3.22527 3.55707 3.95992 4.08363 4.20249 4.50814 4.64676 4.84533 4.92524 4.95649 5.16261 5.22454 5.39338 5.45674 5.53663 5.77968 6.04869 6.16506 6.25580 6.44165 6.60897 6.65452 6.67044 6.89286 7.00092 7.36926 7.90508 8.27971 8.47501 8.98051 9.19206 9.78117 10.46639 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.031274 B = 0.005747 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.085710 B = 4870.707038 C = 5616.657015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.425 5.425 3 C -0.301 4.301 4 H 0.107 0.893 5 C 0.031 3.969 6 N -0.871 5.871 7 Si 0.929 3.071 8 H -0.265 1.265 9 H -0.278 1.278 10 H -0.280 1.280 11 C 0.468 3.532 12 O -0.584 6.584 13 C -0.056 4.056 14 C -0.074 4.074 15 C -0.065 4.065 16 C 0.009 3.991 17 N -0.261 5.261 18 N -0.034 5.034 19 N -0.322 5.322 20 C 0.088 3.912 21 C 0.023 3.977 22 C -0.091 4.091 23 H 0.083 0.917 24 H 0.035 0.965 25 H 0.053 0.947 26 H 0.271 0.729 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 -6.690 -0.315 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.141 5.141 3 C -0.429 4.429 4 H 0.124 0.876 5 C -0.174 4.174 6 N -0.509 5.509 7 Si 0.755 3.245 8 H -0.189 1.189 9 H -0.204 1.204 10 H -0.205 1.205 11 C 0.257 3.743 12 O -0.470 6.470 13 C -0.064 4.064 14 C -0.096 4.096 15 C -0.087 4.087 16 C -0.117 4.117 17 N -0.136 5.136 18 N -0.015 5.015 19 N -0.123 5.123 20 C -0.053 4.053 21 C -0.095 4.095 22 C -0.114 4.114 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.389 -7.712 -0.150 10.681 hybrid contribution 0.496 1.873 0.152 1.943 sum -6.893 -5.839 0.002 9.034 Atomic orbital electron populations 1.21936 0.81245 1.01129 1.00173 1.43585 1.05703 1.04863 1.59906 1.19846 0.97498 0.82577 1.42965 0.87554 1.25380 0.96435 1.00289 0.95278 1.70014 1.17280 1.29216 1.34391 0.85817 0.79385 0.80769 0.78554 1.18913 1.20417 1.20544 1.17701 0.87418 0.82670 0.86473 1.90642 1.13452 1.86310 1.56572 1.20192 0.93234 0.96319 0.96629 1.20853 0.99956 0.91329 0.97473 1.19853 0.91477 0.97944 0.99431 1.19974 0.98044 0.91132 1.02507 1.75229 0.99629 1.23833 1.14932 1.77876 1.19268 0.96192 1.08121 1.46990 1.16502 1.11116 1.37691 1.22205 0.92299 0.97455 0.93310 1.19666 0.89508 0.98257 1.02039 1.20635 0.94520 0.94469 1.01805 0.89809 0.94628 0.92914 0.91873 0.84028 0.84473 0.89394 0.88185 0.88162 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.05 7.19 59.85 0.43 2.48 16 2 N -0.42 -10.40 3.02 -123.37 -0.37 -10.77 16 3 C -0.30 -7.96 9.33 -15.01 -0.14 -8.10 16 4 H 0.11 2.95 7.40 -52.49 -0.39 2.56 16 5 C 0.03 0.76 4.98 -17.45 -0.09 0.67 16 6 N -0.87 -21.51 10.68 55.50 0.59 -20.91 16 7 Si 0.93 19.45 29.59 -169.99 -5.03 14.42 16 8 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 9 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 C 0.47 11.22 7.29 -12.44 -0.09 11.13 16 12 O -0.58 -15.95 16.58 5.27 0.09 -15.86 16 13 C -0.06 -1.09 5.26 -104.92 -0.55 -1.64 16 14 C -0.07 -1.26 9.54 -39.55 -0.38 -1.64 16 15 C -0.06 -1.00 10.03 -39.70 -0.40 -1.40 16 16 C 0.01 0.15 7.36 -84.94 -0.63 -0.47 16 17 N -0.26 -4.53 12.42 32.10 0.40 -4.13 16 18 N -0.03 -0.55 13.07 60.35 0.79 0.24 16 19 N -0.32 -4.58 3.80 -65.55 -0.25 -4.83 16 20 C 0.09 0.78 11.40 59.84 0.68 1.47 16 21 C 0.02 0.38 6.93 -84.23 -0.58 -0.20 16 22 C -0.09 -1.57 7.54 -39.07 -0.29 -1.86 16 23 H 0.08 1.86 6.38 -51.92 -0.33 1.52 16 24 H 0.04 0.65 5.77 -51.93 -0.30 0.35 16 25 H 0.05 1.07 6.73 -51.93 -0.35 0.72 16 26 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 27 H 0.14 2.28 8.04 -52.49 -0.42 1.85 16 28 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.15 2.37 5.26 -52.49 -0.28 2.10 16 LS Contribution 277.70 15.07 4.18 4.18 Total: -1.00 -31.45 277.70 -4.53 -35.98 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -2.89 Total: 1.25 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.04 Total: 0.43 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 1.16 Total: -40.41 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.86 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.45 -4.53 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347938414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.718 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds