Wall clock time and date at job start Mon Mar 30 2020 04:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36866 * 119.99906 * 2 1 4 4 H 1.07999 * 119.99698 * 197.55055 * 3 2 1 5 5 C 1.39040 * 120.00413 * 17.26943 * 3 2 1 6 6 N 1.31368 * 120.00130 * 17.54089 * 5 3 2 7 7 Si 1.86805 * 120.00361 * 197.54021 * 5 3 2 8 8 H 1.48499 * 109.46907 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46966 * 120.00204 * 7 5 3 10 10 H 1.48494 * 109.47369 * 239.99985 * 7 5 3 11 11 C 1.34775 * 120.00099 * 179.97438 * 2 1 3 12 12 O 1.21609 * 120.00425 * 185.69803 * 11 2 1 13 13 C 1.47595 * 119.99834 * 5.70439 * 11 2 1 14 14 C 1.40324 * 119.88852 * 141.04800 * 13 11 2 15 15 C 1.36134 * 120.55018 * 180.02562 * 14 13 11 16 16 C 1.39933 * 119.98953 * 359.97438 * 15 14 13 17 17 N 1.34747 * 134.58721 * 180.02562 * 16 15 14 18 18 N 1.28636 * 109.29891 * 179.97438 * 17 16 15 19 19 N 1.28818 * 111.79689 * 359.97438 * 18 17 16 20 20 C 1.46493 * 125.94555 * 180.02562 * 19 18 17 21 21 C 1.37371 * 108.10651 * 0.02562 * 19 18 17 22 22 C 1.38604 * 134.88109 * 180.33233 * 21 19 18 23 23 H 1.09008 * 109.46930 * 25.40028 * 1 2 3 24 24 H 1.09000 * 109.46733 * 145.39339 * 1 2 3 25 25 H 1.08999 * 109.47282 * 265.39920 * 1 2 3 26 26 H 0.97000 * 120.00583 * 179.97438 * 6 5 3 27 27 H 1.08000 * 119.72378 * 0.02562 * 14 13 11 28 28 H 1.08006 * 120.00482 * 180.02562 * 15 14 13 29 29 H 1.08993 * 109.47337 * 90.02815 * 20 19 18 30 30 H 1.09006 * 109.47567 * 210.03243 * 20 19 18 31 31 H 1.09001 * 109.47513 * 330.02973 * 20 19 18 32 32 H 1.08001 * 120.25019 * 359.91827 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.1916 1.2070 -0.2820 5 6 1.5012 2.3623 0.3574 6 7 0.3649 2.3129 1.0148 7 14 2.2462 4.0140 -0.0970 8 1 3.5193 3.7978 -0.8302 9 1 1.2990 4.7634 -0.9609 10 1 2.5122 4.7938 1.1385 11 6 2.1389 -1.1672 0.0005 12 8 3.3505 -1.1698 0.1051 13 6 1.4064 -2.4423 -0.1260 14 6 1.9425 -3.4829 -0.8997 15 6 1.2781 -4.6644 -1.0260 16 6 0.0502 -4.8487 -0.3808 17 7 -0.8345 -5.8621 -0.3025 18 7 -1.8236 -5.5066 0.4391 19 7 -1.6812 -4.3058 0.8831 20 6 -2.6205 -3.5934 1.7528 21 6 -0.4953 -3.8094 0.3990 22 6 0.1888 -2.6109 0.5282 23 1 -0.3633 0.9284 -0.4408 24 1 -0.3633 -0.8459 -0.5837 25 1 -0.3634 -0.0824 1.0243 26 1 -0.0872 3.1340 1.2645 27 1 2.8902 -3.3454 -1.3992 28 1 1.6991 -5.4596 -1.6235 29 1 -2.3634 -3.7801 2.7954 30 1 -2.5635 -2.5238 1.5504 31 1 -3.6336 -3.9462 1.5597 32 1 -0.2215 -1.8123 1.1285 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347938414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:30 Heat of formation + Delta-G solvation = 82.606919 kcal Electronic energy + Delta-G solvation = -19046.251595 eV Core-core repulsion = 16009.242774 eV Total energy + Delta-G solvation = -3037.008821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.20239 -40.85542 -38.34874 -36.80858 -35.87301 -33.84949 -31.87772 -31.62643 -28.91292 -28.17839 -26.96470 -25.10993 -24.34350 -22.21504 -21.37424 -19.13997 -19.06469 -18.20067 -17.88469 -17.69325 -16.83820 -16.07768 -15.94075 -15.72358 -15.19529 -14.84873 -14.39369 -14.03930 -13.81901 -13.71409 -13.38132 -13.28085 -13.13375 -13.01792 -12.76738 -12.54874 -12.33446 -12.11567 -11.76182 -11.68373 -11.02222 -10.57350 -10.00760 -9.81846 -9.32390 -8.44676 -5.98642 -0.64234 0.17156 1.08736 1.23076 1.39184 1.43904 1.57067 1.97125 2.24150 2.60382 2.83262 2.97172 3.11349 3.51924 3.60747 3.74576 4.03137 4.14386 4.30225 4.36483 4.45808 4.54063 4.61095 4.83247 4.88051 4.95262 5.14871 5.27544 5.32411 5.41185 5.49907 5.59326 6.00688 6.39443 7.07438 7.21508 7.33328 7.91564 8.58192 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.031274 B = 0.005747 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.085710 B = 4870.707038 C = 5616.657015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.439 5.439 3 C -0.345 4.345 4 H 0.078 0.922 5 C 0.004 3.996 6 N -0.882 5.882 7 Si 0.990 3.010 8 H -0.273 1.273 9 H -0.264 1.264 10 H -0.274 1.274 11 C 0.463 3.537 12 O -0.630 6.630 13 C -0.080 4.080 14 C -0.078 4.078 15 C -0.051 4.051 16 C 0.002 3.998 17 N -0.284 5.284 18 N -0.031 5.031 19 N -0.306 5.306 20 C 0.071 3.929 21 C 0.013 3.987 22 C -0.072 4.072 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.279 0.721 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 -7.101 -0.111 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.154 5.154 3 C -0.473 4.473 4 H 0.096 0.904 5 C -0.200 4.200 6 N -0.520 5.520 7 Si 0.814 3.186 8 H -0.198 1.198 9 H -0.188 1.188 10 H -0.200 1.200 11 C 0.254 3.746 12 O -0.519 6.519 13 C -0.087 4.087 14 C -0.100 4.100 15 C -0.073 4.073 16 C -0.124 4.124 17 N -0.158 5.158 18 N -0.011 5.011 19 N -0.108 5.108 20 C -0.067 4.067 21 C -0.106 4.106 22 C -0.095 4.095 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.186 0.814 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.265 -8.131 0.068 12.327 hybrid contribution 0.924 1.880 0.172 2.102 sum -8.341 -6.251 0.239 10.426 Atomic orbital electron populations 1.21900 0.79275 1.01381 1.00662 1.43786 1.07013 1.04586 1.60050 1.19747 0.97156 0.84383 1.45976 0.90395 1.26068 0.96819 1.02650 0.94419 1.70044 1.17638 1.30412 1.33891 0.84922 0.78511 0.76822 0.78391 1.19773 1.18841 1.19957 1.18371 0.87189 0.83974 0.85070 1.90586 1.15623 1.87358 1.58312 1.19870 0.94473 0.94912 0.99490 1.20872 1.00290 0.91328 0.97500 1.20073 0.90651 0.97849 0.98691 1.20319 0.98445 0.91244 1.02373 1.75241 1.00160 1.24303 1.16127 1.77823 1.18885 0.96762 1.07672 1.47444 1.16130 1.10479 1.36732 1.22762 0.92568 0.97915 0.93489 1.19616 0.90502 0.97857 1.02616 1.20499 0.93437 0.94872 1.00709 0.91326 0.92042 0.92537 0.91117 0.83728 0.81364 0.87394 0.86860 0.85586 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.55 7.19 127.77 0.92 5.47 16 2 N -0.44 -21.99 3.02 -662.47 -2.00 -23.98 16 3 C -0.34 -18.86 9.33 84.10 0.78 -18.08 16 4 H 0.08 4.59 7.40 -2.91 -0.02 4.57 16 5 C 0.00 0.20 4.98 84.95 0.42 0.62 16 6 N -0.88 -43.20 10.68 21.68 0.23 -42.97 16 7 Si 0.99 39.93 29.59 68.60 2.03 41.96 16 8 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 9 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 11 C 0.46 22.83 7.29 86.71 0.63 23.47 16 12 O -0.63 -35.95 16.58 -4.06 -0.07 -36.02 16 13 C -0.08 -3.10 5.26 -20.06 -0.11 -3.20 16 14 C -0.08 -2.60 9.54 22.29 0.21 -2.39 16 15 C -0.05 -1.47 10.03 22.19 0.22 -1.24 16 16 C 0.00 0.07 7.36 39.76 0.29 0.36 16 17 N -0.28 -9.22 12.42 -52.37 -0.65 -9.87 16 18 N -0.03 -0.90 13.07 37.02 0.48 -0.41 16 19 N -0.31 -7.80 3.80 -361.29 -1.37 -9.17 16 20 C 0.07 1.01 11.40 127.77 1.46 2.46 16 21 C 0.01 0.40 6.93 39.02 0.27 0.67 16 22 C -0.07 -2.38 7.54 22.60 0.17 -2.21 16 23 H 0.07 3.02 6.38 -2.38 -0.02 3.01 16 24 H 0.06 2.17 5.77 -2.39 -0.01 2.16 16 25 H 0.06 2.25 6.73 -2.39 -0.02 2.24 16 26 H 0.28 12.61 8.31 -92.71 -0.77 11.84 16 27 H 0.14 4.66 8.04 -2.91 -0.02 4.64 16 28 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 29 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.15 4.71 5.26 -2.91 -0.02 4.69 16 Total: -1.00 -69.02 277.70 5.10 -63.92 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.16 Total: 10.61 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.28 Total: 5.93 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -3.31 Total: -86.41 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.07 Total: -36.02 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -69.02 5.10 -63.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347938414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.526 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds