Wall clock time and date at job start Mon Mar 30 2020 04:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37736 * 125.90118 * 262.01178 * 3 2 1 5 5 C 1.39939 * 106.80131 * 180.02562 * 4 3 2 6 6 C 1.36629 * 107.00863 * 359.97438 * 5 4 3 7 7 C 1.47029 * 125.70877 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99807 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00096 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 187.13201 * 14 12 11 17 17 H 1.48503 * 109.46796 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47212 * 300.00012 * 16 14 12 19 19 H 1.48498 * 109.47212 * 60.00416 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 O 1.34558 * 125.89789 * 82.30218 * 3 2 1 23 23 H 1.08001 * 126.59186 * 359.97438 * 4 3 2 24 24 H 1.08000 * 126.49405 * 180.02562 * 5 4 3 25 25 H 0.97003 * 119.99966 * 0.02562 * 9 7 6 26 26 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 27 27 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 28 28 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 29 29 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 30 30 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 31 31 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 32 32 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3756 0.1561 1.1049 5 6 4.6980 0.0936 0.6513 6 6 4.6482 -0.0964 -0.7008 7 6 5.8100 -0.2202 -1.5933 8 8 6.9362 -0.1551 -1.1382 9 7 5.6272 -0.4056 -2.9157 10 6 6.7849 -0.5295 -3.8049 11 6 6.3067 -0.6147 -5.2558 12 6 5.4402 -1.8025 -5.5859 13 1 4.3644 -1.7092 -5.5633 14 6 6.0207 -3.0086 -5.9169 15 7 7.3222 -3.1634 -5.8091 16 14 4.9585 -4.4226 -6.5183 17 1 5.8173 -5.5997 -6.8048 18 1 3.9669 -4.7770 -5.4711 19 1 4.2468 -4.0153 -7.7564 20 6 6.0089 0.7000 -5.9798 21 6 7.2565 -0.1090 -6.3434 22 8 3.3570 -0.1450 -1.0802 23 1 3.0506 0.2994 2.1248 24 1 5.5890 0.1786 1.2557 25 1 4.7291 -0.4571 -3.2786 26 1 7.3421 -1.4316 -3.5524 27 1 7.4296 0.3412 -3.6853 28 1 7.8814 -2.4105 -5.5611 29 1 5.1863 0.7056 -6.6948 30 1 6.1541 1.6255 -5.4226 31 1 8.2219 0.2848 -6.0254 32 1 7.2549 -0.6358 -7.2977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352645893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:20 Heat of formation + Delta-G solvation = 31.428983 kcal Electronic energy + Delta-G solvation = -18355.577705 eV Core-core repulsion = 15284.056892 eV Total energy + Delta-G solvation = -3071.520814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.99016 -39.23145 -37.10889 -36.92568 -33.95683 -33.25841 -32.00176 -30.69836 -26.92870 -25.03847 -24.02936 -22.23694 -21.44946 -20.37608 -19.84051 -19.62003 -17.88647 -16.80420 -16.63951 -15.53065 -14.78628 -14.72179 -14.37032 -13.82450 -13.77961 -13.66168 -13.59362 -13.34029 -13.13589 -12.90019 -12.66594 -12.47058 -11.89223 -11.04742 -10.87228 -10.57929 -10.38809 -10.22904 -10.17205 -9.72151 -9.03645 -8.81860 -8.59096 -8.51687 -8.37702 -6.47092 -4.24163 0.39897 1.61160 1.72753 2.60515 2.96006 3.24273 3.31487 3.37202 3.38233 3.56801 3.86594 4.41500 4.46422 4.75330 5.03128 5.18839 5.20776 5.33653 5.50526 5.70547 5.94726 6.03212 6.12380 6.22068 6.40348 6.45115 6.49909 6.76355 6.85137 6.95050 7.06106 7.14654 7.86805 8.07437 8.26134 8.35544 8.73801 9.52153 10.92181 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.018382 B = 0.005574 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.856650 B = 5022.190084 C = 5725.158283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C 0.292 3.708 3 C 0.053 3.947 4 C -0.127 4.127 5 C -0.140 4.140 6 C -0.011 4.011 7 C 0.585 3.415 8 O -0.526 6.526 9 N -0.680 5.680 10 C 0.155 3.845 11 C 0.001 3.999 12 C -0.580 4.580 13 H 0.054 0.946 14 C 0.031 3.969 15 N -0.898 5.898 16 Si 1.065 2.935 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.193 4.193 21 C -0.169 4.169 22 O -0.139 6.139 23 H 0.170 0.830 24 H 0.173 0.827 25 H 0.410 0.590 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.276 0.724 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 6.659 10.327 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.053 5.053 2 C -0.023 4.023 3 C -0.001 4.001 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.066 4.066 7 C 0.369 3.631 8 O -0.405 6.405 9 N -0.328 5.328 10 C 0.032 3.968 11 C 0.001 3.999 12 C -0.617 4.617 13 H 0.072 0.928 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.893 3.107 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.230 4.230 21 C -0.207 4.207 22 O -0.032 6.032 23 H 0.188 0.812 24 H 0.191 0.809 25 H 0.245 0.755 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.085 5.045 9.794 12.586 hybrid contribution -0.048 1.602 0.300 1.631 sum -6.133 6.648 10.094 13.554 Atomic orbital electron populations 1.81345 1.10457 1.08508 1.05023 1.23490 0.89527 0.94156 0.95169 1.16873 0.84504 1.12567 0.86200 1.22127 0.91539 1.02269 0.99017 1.21896 0.98515 1.02633 0.92958 1.22839 0.81129 1.07083 0.95591 1.16658 0.85517 0.78877 0.82078 1.90865 1.21408 1.52603 1.75609 1.45921 1.12415 1.68764 1.05692 1.21212 0.85799 1.00141 0.89659 1.19321 0.99274 0.93636 0.87717 1.21187 0.92925 0.95159 1.52440 0.92784 1.25769 0.97828 1.00033 0.93930 1.70752 1.04739 1.34440 1.43189 0.83593 0.74835 0.75772 0.76511 1.20706 1.21418 1.21379 1.22919 0.99959 0.95009 1.05157 1.22756 0.92555 1.04058 1.01364 1.84161 1.16137 1.69142 1.33745 0.81201 0.80918 0.75450 0.91100 0.93313 0.91282 0.89932 0.91288 0.91144 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.88 18.54 41.84 0.78 -4.10 16 2 C 0.29 3.34 15.89 -22.47 -0.36 2.99 16 3 C 0.05 0.58 7.10 -37.84 -0.27 0.31 16 4 C -0.13 -1.11 10.86 -39.13 -0.42 -1.54 16 5 C -0.14 -1.51 10.58 -39.53 -0.42 -1.93 16 6 C -0.01 -0.15 7.12 -36.60 -0.26 -0.41 16 7 C 0.59 10.17 7.80 -12.70 -0.10 10.07 16 8 O -0.53 -10.39 16.85 5.24 0.09 -10.30 16 9 N -0.68 -12.63 5.45 -61.51 -0.34 -12.97 16 10 C 0.15 3.25 5.43 -4.04 -0.02 3.23 16 11 C 0.00 0.03 0.99 -155.66 -0.15 -0.12 16 12 C -0.58 -14.61 8.44 -34.44 -0.29 -14.90 16 13 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 14 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 15 N -0.90 -25.09 13.57 55.43 0.75 -24.34 16 16 Si 1.06 23.77 29.91 -169.99 -5.08 18.69 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 20 C -0.19 -3.83 9.96 -26.69 -0.27 -4.09 16 21 C -0.17 -3.60 8.74 -26.69 -0.23 -3.83 16 22 O -0.14 -1.84 10.40 4.02 0.04 -1.80 16 23 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 24 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 25 H 0.41 7.34 7.97 -40.82 -0.33 7.01 16 26 H 0.07 1.67 7.82 -51.93 -0.41 1.27 16 27 H 0.05 0.98 8.11 -51.93 -0.42 0.55 16 28 H 0.28 7.61 6.19 -40.82 -0.25 7.35 16 29 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 300.91 15.07 4.53 4.53 Total: -1.00 -28.75 300.91 -5.26 -34.02 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.15 Total: 5.76 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.89 Total: -9.49 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 1.19 Total: -41.41 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.13 Total: -12.10 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.08 Total: 18.69 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.75 -5.26 -34.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.447 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds