Wall clock time and date at job start Mon Mar 30 2020 04:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.37736 * 125.90118 * 262.01178 * 3 2 1 5 5 C 1.39939 * 106.80131 * 180.02562 * 4 3 2 6 6 C 1.36629 * 107.00863 * 359.97438 * 5 4 3 7 7 C 1.47029 * 125.70877 * 179.97438 * 6 5 4 8 8 O 1.21640 * 119.99807 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00096 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99989 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47002 * 184.66830 * 10 9 7 12 12 C 1.50696 * 115.55193 * 297.93943 * 11 10 9 13 13 H 1.08001 * 120.00063 * 95.21366 * 12 11 10 14 14 C 1.37879 * 119.99802 * 275.21021 * 12 11 10 15 15 N 1.31514 * 119.99885 * 7.13436 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 187.13201 * 14 12 11 17 17 H 1.48503 * 109.46796 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47212 * 300.00012 * 16 14 12 19 19 H 1.48498 * 109.47212 * 60.00416 * 16 14 12 20 20 C 1.53008 * 117.49664 * 83.60874 * 11 10 9 21 21 C 1.53000 * 117.49581 * 152.26424 * 11 10 9 22 22 O 1.34558 * 125.89789 * 82.30218 * 3 2 1 23 23 H 1.08001 * 126.59186 * 359.97438 * 4 3 2 24 24 H 1.08000 * 126.49405 * 180.02562 * 5 4 3 25 25 H 0.97003 * 119.99966 * 0.02562 * 9 7 6 26 26 H 1.08996 * 109.47106 * 64.66760 * 10 9 7 27 27 H 1.08998 * 109.46754 * 304.66975 * 10 9 7 28 28 H 0.97004 * 120.00131 * 355.39941 * 15 14 12 29 29 H 1.08998 * 117.49575 * 215.00498 * 20 11 10 30 30 H 1.08997 * 117.50012 * 0.02562 * 20 11 10 31 31 H 1.09003 * 117.50343 * 359.97438 * 21 11 10 32 32 H 1.08997 * 117.49643 * 144.97660 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3756 0.1561 1.1049 5 6 4.6980 0.0936 0.6513 6 6 4.6482 -0.0964 -0.7008 7 6 5.8100 -0.2202 -1.5933 8 8 6.9362 -0.1551 -1.1382 9 7 5.6272 -0.4056 -2.9157 10 6 6.7849 -0.5295 -3.8049 11 6 6.3067 -0.6147 -5.2558 12 6 5.4402 -1.8025 -5.5859 13 1 4.3644 -1.7092 -5.5633 14 6 6.0207 -3.0086 -5.9169 15 7 7.3222 -3.1634 -5.8091 16 14 4.9585 -4.4226 -6.5183 17 1 5.8173 -5.5997 -6.8048 18 1 3.9669 -4.7770 -5.4711 19 1 4.2468 -4.0153 -7.7564 20 6 6.0089 0.7000 -5.9798 21 6 7.2565 -0.1090 -6.3434 22 8 3.3570 -0.1450 -1.0802 23 1 3.0506 0.2994 2.1248 24 1 5.5890 0.1786 1.2557 25 1 4.7291 -0.4571 -3.2786 26 1 7.3421 -1.4316 -3.5524 27 1 7.4296 0.3412 -3.6853 28 1 7.8814 -2.4105 -5.5611 29 1 5.1863 0.7056 -6.6948 30 1 6.1541 1.6255 -5.4226 31 1 8.2219 0.2848 -6.0254 32 1 7.2549 -0.6358 -7.2977 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352645893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:20 Heat of formation + Delta-G solvation = 13.737420 kcal Electronic energy + Delta-G solvation = -18356.344869 eV Core-core repulsion = 15284.056892 eV Total energy + Delta-G solvation = -3072.287977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.93003 -40.67075 -38.78552 -37.89444 -35.34274 -34.29018 -33.95405 -31.71728 -28.42127 -26.96720 -25.21440 -23.21472 -23.02487 -21.72070 -21.49698 -20.57717 -19.30371 -18.37344 -17.78760 -17.05566 -16.29334 -15.96815 -15.63116 -15.51174 -15.10291 -14.68437 -14.62247 -14.56738 -14.39081 -14.20778 -14.13080 -13.63295 -13.57408 -12.85472 -12.64560 -12.23191 -11.97254 -11.70231 -11.39879 -11.22021 -10.60714 -10.46539 -10.35424 -10.17478 -9.80268 -8.53079 -6.29307 -0.58080 0.65980 0.81492 1.55762 1.60762 1.67302 1.79562 1.98587 2.06030 2.08050 2.57594 2.81942 3.22581 3.27863 3.64369 3.78206 4.02478 4.29245 4.34389 4.38475 4.43208 4.52853 4.75593 4.82160 4.84304 5.06452 5.16748 5.25979 5.33829 5.45948 5.56713 6.04898 6.12651 6.25157 6.45474 6.70335 6.95468 7.52917 8.87076 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.018382 B = 0.005574 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.856650 B = 5022.190084 C = 5725.158283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.311 3.689 3 C 0.050 3.950 4 C -0.096 4.096 5 C -0.116 4.116 6 C -0.043 4.043 7 C 0.588 3.412 8 O -0.556 6.556 9 N -0.686 5.686 10 C 0.170 3.830 11 C -0.024 4.024 12 C -0.579 4.579 13 H 0.050 0.950 14 C -0.015 4.015 15 N -0.929 5.929 16 Si 1.104 2.896 17 H -0.289 1.289 18 H -0.276 1.276 19 H -0.273 1.273 20 C -0.166 4.166 21 C -0.173 4.173 22 O -0.157 6.157 23 H 0.215 0.785 24 H 0.191 0.809 25 H 0.412 0.588 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 7.602 11.980 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.004 4.004 3 C -0.004 4.004 4 C -0.118 4.118 5 C -0.136 4.136 6 C -0.098 4.098 7 C 0.375 3.625 8 O -0.437 6.437 9 N -0.334 5.334 10 C 0.046 3.954 11 C -0.025 4.025 12 C -0.617 4.617 13 H 0.068 0.932 14 C -0.216 4.216 15 N -0.564 5.564 16 Si 0.928 3.072 17 H -0.215 1.215 18 H -0.201 1.201 19 H -0.199 1.199 20 C -0.203 4.203 21 C -0.211 4.211 22 O -0.051 6.051 23 H 0.232 0.768 24 H 0.208 0.792 25 H 0.248 0.752 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.424 6.011 11.455 14.915 hybrid contribution 0.306 1.367 -0.141 1.408 sum -7.118 7.378 11.314 15.268 Atomic orbital electron populations 1.81375 1.11269 1.09542 1.05923 1.23428 0.89394 0.93267 0.94295 1.17076 0.84200 1.12680 0.86437 1.22586 0.89728 0.99269 1.00181 1.22259 1.00145 0.99632 0.91558 1.22223 0.80609 1.11029 0.95932 1.16971 0.86397 0.77460 0.81714 1.90836 1.23036 1.53774 1.76049 1.45846 1.11665 1.69643 1.06242 1.20815 0.86476 0.98785 0.89305 1.19345 1.00163 0.94344 0.88604 1.21453 0.93097 0.96099 1.51054 0.93217 1.26889 0.98102 1.02628 0.93990 1.70842 1.05604 1.34326 1.45660 0.83071 0.73836 0.73348 0.76950 1.21522 1.20124 1.19887 1.22921 0.98770 0.94691 1.03930 1.22701 0.93936 1.04459 1.00024 1.84109 1.16029 1.70081 1.34896 0.76817 0.79155 0.75203 0.94640 0.92449 0.92229 0.89848 0.88723 0.89609 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -9.79 18.54 19.00 0.35 -9.44 16 2 C 0.31 6.42 15.89 88.33 1.40 7.83 16 3 C 0.05 0.96 7.10 23.40 0.17 1.12 16 4 C -0.10 -1.26 10.86 22.56 0.25 -1.01 16 5 C -0.12 -2.12 10.58 22.31 0.24 -1.89 16 6 C -0.04 -1.14 7.12 24.20 0.17 -0.96 16 7 C 0.59 20.33 7.80 86.55 0.67 21.01 16 8 O -0.56 -21.98 16.85 -4.16 -0.07 -22.05 16 9 N -0.69 -25.63 5.45 -466.76 -2.55 -28.18 16 10 C 0.17 7.25 5.43 86.38 0.47 7.72 16 11 C -0.02 -1.06 0.99 -52.93 -0.05 -1.12 16 12 C -0.58 -29.44 8.44 25.60 0.22 -29.22 16 13 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 14 C -0.01 -0.80 5.39 84.66 0.46 -0.34 16 15 N -0.93 -53.24 13.57 21.45 0.29 -52.95 16 16 Si 1.10 48.15 29.91 68.60 2.05 50.20 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C -0.17 -6.36 9.96 30.62 0.30 -6.05 16 21 C -0.17 -7.36 8.74 30.62 0.27 -7.09 16 22 O -0.16 -3.93 10.40 -8.54 -0.09 -4.02 16 23 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 24 H 0.19 2.84 8.06 -2.91 -0.02 2.81 16 25 H 0.41 14.83 7.97 -92.71 -0.74 14.09 16 26 H 0.04 1.74 7.82 -2.39 -0.02 1.73 16 27 H 0.06 2.30 8.11 -2.39 -0.02 2.29 16 28 H 0.27 15.27 6.19 -92.71 -0.57 14.69 16 29 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -63.32 300.91 5.17 -58.15 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.62 Total: 18.30 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.56 Total: -10.01 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -1.90 Total: -90.57 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.16 Total: -26.07 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.05 Total: 50.20 kcal Total: -63.32 5.17 -58.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.886 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds