Wall clock time and date at job start Mon Mar 30 2020 04:46:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.46994 * 2 1
4 4 C 1.50694 * 109.46870 * 240.00253 * 2 1 3
5 5 H 1.08005 * 119.99859 * 240.00136 * 4 2 1
6 6 C 1.37879 * 120.00440 * 59.99833 * 4 2 1
7 7 N 1.31513 * 119.99685 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 120.00191 * 179.97438 * 6 4 2
9 9 H 1.48497 * 109.47316 * 60.00083 * 8 6 4
10 10 H 1.48497 * 109.47060 * 180.02562 * 8 6 4
11 11 H 1.48507 * 109.47073 * 300.00076 * 8 6 4
12 12 N 1.46497 * 109.47296 * 120.00053 * 2 1 3
13 13 C 1.34774 * 119.99986 * 275.00169 * 12 2 1
14 14 O 1.21631 * 120.00289 * 359.97438 * 13 12 2
15 15 C 1.47207 * 120.00197 * 179.97438 * 13 12 2
16 16 C 1.37755 * 119.94379 * 179.97438 * 15 13 12
17 17 C 1.39861 * 119.93059 * 179.74466 * 16 15 13
18 18 C 1.36298 * 119.82001 * 0.54039 * 17 16 15
19 19 C 1.40777 * 119.70707 * 359.46294 * 18 17 16
20 20 N 1.32818 * 132.74044 * 180.27802 * 19 18 17
21 21 C 1.32367 * 109.74471 * 180.02562 * 20 19 18
22 22 N 1.31386 * 109.61749 * 0.02562 * 21 20 19
23 23 N 1.36545 * 119.87884 * 0.28140 * 19 18 17
24 24 H 1.08997 * 109.46994 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.46878 * 300.00190 * 1 2 3
26 26 H 1.09005 * 109.47094 * 59.99411 * 1 2 3
27 27 H 0.97004 * 119.99613 * 179.97438 * 7 6 4
28 28 H 0.97000 * 120.00295 * 94.99726 * 12 2 1
29 29 H 1.07998 * 120.02793 * 0.02562 * 16 15 13
30 30 H 1.07994 * 120.08953 * 180.28174 * 17 16 15
31 31 H 1.08002 * 120.14847 * 179.74657 * 18 17 16
32 32 H 1.08008 * 125.19690 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9435 0.8303 -2.6034
8 14 2.3224 -1.1195 -4.0080
9 1 1.8280 -2.5197 -4.0082
10 1 1.8278 -0.4191 -5.2204
11 1 3.8075 -1.1189 -4.0078
12 7 2.0184 -0.6906 1.1961
13 6 2.1471 -0.0183 2.3571
14 8 1.8582 1.1620 2.4117
15 6 2.6373 -0.7123 3.5592
16 6 2.7689 -0.0238 4.7450
17 6 3.2296 -0.6848 5.8883
18 6 3.5572 -2.0061 5.8215
19 6 3.4184 -2.6986 4.6037
20 7 3.6499 -3.9581 4.2516
21 6 3.3605 -4.1248 2.9707
22 7 2.9382 -2.9891 2.4626
23 7 2.9625 -2.0427 3.4963
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 0.7095 1.1618 -3.4844
28 1 2.2491 -1.6318 1.1526
29 1 2.5122 1.0241 4.7929
30 1 3.3294 -0.1486 6.8204
31 1 3.9174 -2.5207 6.7001
32 1 3.4574 -5.0524 2.4261
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000359784056.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:46:45
Heat of formation + Delta-G solvation = 88.120565 kcal
Electronic energy + Delta-G solvation = -18959.552834 eV
Core-core repulsion = 15922.783103 eV
Total energy + Delta-G solvation = -3036.769731 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.101 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-42.74643 -39.27106 -37.49667 -34.92836 -33.83002 -32.28290 -31.01720 -30.05819
-28.89588 -25.30788 -24.83966 -23.52135 -22.84071 -20.97070 -19.82660 -18.07322
-17.68983 -16.83611 -16.31854 -16.11277 -15.52289 -15.28091 -14.45421 -14.26439
-14.15301 -13.34154 -13.05626 -12.76738 -12.44418 -12.22700 -11.83276 -11.59460
-11.29616 -11.13136 -10.96748 -10.81729 -10.43476 -10.24977 -10.16037 -9.68482
-9.47284 -9.09128 -8.58270 -8.41508 -7.99703 -6.13721 -4.22570 0.19878
0.83509 1.92183 2.46514 3.07634 3.26518 3.30883 3.32741 3.59610
3.64696 3.85581 4.14098 4.34789 4.64590 4.74371 4.87598 5.17073
5.18954 5.36559 5.62878 5.79735 6.02512 6.12191 6.32791 6.54211
6.76856 6.90723 7.07778 7.30105 7.49499 7.67113 7.83030 7.87237
8.09844 8.52296 8.70416 8.96065 9.43949 10.92515
Molecular weight = 260.10amu
Principal moments of inertia in cm(-1)
A = 0.027026 B = 0.005886 C = 0.005033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1035.800236 B = 4755.534606 C = 5561.944607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.261 3.739
3 H 0.052 0.948
4 C -0.533 4.533
5 H 0.062 0.938
6 C 0.067 3.933
7 N -0.884 5.884
8 Si 0.904 3.096
9 H -0.275 1.275
10 H -0.285 1.285
11 H -0.276 1.276
12 N -0.682 5.682
13 C 0.538 3.462
14 O -0.538 6.538
15 C 0.107 3.893
16 C -0.097 4.097
17 C -0.065 4.065
18 C -0.095 4.095
19 C 0.275 3.725
20 N -0.547 5.547
21 C 0.242 3.758
22 N -0.337 5.337
23 N -0.273 5.273
24 H 0.027 0.973
25 H 0.015 0.985
26 H 0.094 0.906
27 H 0.265 0.735
28 H 0.407 0.593
29 H 0.174 0.826
30 H 0.157 0.843
31 H 0.159 0.841
32 H 0.229 0.771
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.181 -5.460 15.502 16.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.160 3.840
3 H 0.070 0.930
4 C -0.572 4.572
5 H 0.080 0.920
6 C -0.136 4.136
7 N -0.522 5.522
8 Si 0.731 3.269
9 H -0.201 1.201
10 H -0.211 1.211
11 H -0.202 1.202
12 N -0.333 5.333
13 C 0.320 3.680
14 O -0.417 6.417
15 C -0.005 4.005
16 C -0.120 4.120
17 C -0.091 4.091
18 C -0.116 4.116
19 C 0.022 3.978
20 N -0.277 5.277
21 C -0.058 4.058
22 N -0.168 5.168
23 N -0.051 5.051
24 H 0.047 0.953
25 H 0.034 0.966
26 H 0.112 0.888
27 H 0.075 0.925
28 H 0.247 0.753
29 H 0.191 0.809
30 H 0.175 0.825
31 H 0.177 0.823
32 H 0.245 0.755
Dipole moment (debyes) X Y Z Total
from point charges 3.788 -4.853 14.650 15.891
hybrid contribution 0.413 -0.894 -0.800 1.269
sum 4.201 -5.747 13.850 15.572
Atomic orbital electron populations
1.22083 0.98018 0.99343 1.01090 1.18896 0.91338 0.94046 0.79742
0.93048 1.21154 1.32592 1.13318 0.90093 0.91983 1.24874 0.94754
0.94955 0.99021 1.69888 1.35836 1.22397 1.24061 0.86467 0.79193
0.79636 0.81586 1.20064 1.21063 1.20151 1.46972 1.61430 1.15318
1.09582 1.17592 0.80608 0.86886 0.82941 1.90812 1.52163 1.14351
1.84379 1.21193 1.01039 0.79894 0.98382 1.21488 0.99240 1.02062
0.89243 1.21256 0.95093 0.93617 0.99123 1.20440 1.02483 0.94091
0.94614 1.21857 0.96758 0.89162 0.90044 1.70818 1.29443 1.13562
1.13918 1.26197 0.92870 0.97219 0.89561 1.78246 1.31684 0.98677
1.08223 1.47947 1.39736 1.08116 1.09272 0.95333 0.96574 0.88777
0.92466 0.75311 0.80890 0.82514 0.82318 0.75527
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16
2 C 0.26 6.91 2.56 -69.09 -0.18 6.73 16
3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16
4 C -0.53 -14.68 8.73 -34.44 -0.30 -14.98 16
5 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16
6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16
7 N -0.88 -25.07 11.32 55.43 0.63 -24.44 16
8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16
9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
12 N -0.68 -15.75 5.06 -56.08 -0.28 -16.03 16
13 C 0.54 11.40 7.74 -12.62 -0.10 11.30 16
14 O -0.54 -12.53 15.95 5.25 0.08 -12.45 16
15 C 0.11 1.78 6.80 -82.05 -0.56 1.22 16
16 C -0.10 -1.17 9.58 -39.15 -0.38 -1.54 16
17 C -0.07 -0.55 10.04 -39.67 -0.40 -0.95 16
18 C -0.09 -0.93 10.09 -39.32 -0.40 -1.33 16
19 C 0.27 3.90 7.88 -156.38 -1.23 2.67 16
20 N -0.55 -7.98 11.24 -13.99 -0.16 -8.14 16
21 C 0.24 3.39 12.98 -92.01 -1.19 2.19 16
22 N -0.34 -5.77 9.99 29.25 0.29 -5.48 16
23 N -0.27 -4.51 3.93 -8.82 -0.03 -4.55 16
24 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
26 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16
27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16
28 H 0.41 8.99 5.48 -40.82 -0.22 8.77 16
29 H 0.17 1.89 7.59 -52.49 -0.40 1.49 16
30 H 0.16 0.65 8.06 -52.49 -0.42 0.22 16
31 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16
32 H 0.23 2.15 8.06 -52.48 -0.42 1.72 16
LS Contribution 282.53 15.07 4.26 4.26
Total: -1.00 -32.99 282.53 -7.70 -40.69
By element:
Atomic # 1 Polarization: 9.45 SS G_CDS: -2.99 Total: 6.46 kcal
Atomic # 6 Polarization: 8.13 SS G_CDS: -4.48 Total: 3.65 kcal
Atomic # 7 Polarization: -59.07 SS G_CDS: 0.44 Total: -58.63 kcal
Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -32.99 -7.70 -40.69 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359784056.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.811 kcal
(2) G-P(sol) polarization free energy of solvation -32.988 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.822 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds