Wall clock time and date at job start Mon Mar 30 2020 04:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46994 * 2 1 4 4 C 1.50694 * 109.46870 * 240.00253 * 2 1 3 5 5 H 1.08005 * 119.99859 * 240.00136 * 4 2 1 6 6 C 1.37879 * 120.00440 * 59.99833 * 4 2 1 7 7 N 1.31513 * 119.99685 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00191 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47316 * 60.00083 * 8 6 4 10 10 H 1.48497 * 109.47060 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47073 * 300.00076 * 8 6 4 12 12 N 1.46497 * 109.47296 * 120.00053 * 2 1 3 13 13 C 1.34774 * 119.99986 * 275.00169 * 12 2 1 14 14 O 1.21631 * 120.00289 * 359.97438 * 13 12 2 15 15 C 1.47207 * 120.00197 * 179.97438 * 13 12 2 16 16 C 1.37755 * 119.94379 * 179.97438 * 15 13 12 17 17 C 1.39861 * 119.93059 * 179.74466 * 16 15 13 18 18 C 1.36298 * 119.82001 * 0.54039 * 17 16 15 19 19 C 1.40777 * 119.70707 * 359.46294 * 18 17 16 20 20 N 1.32818 * 132.74044 * 180.27802 * 19 18 17 21 21 C 1.32367 * 109.74471 * 180.02562 * 20 19 18 22 22 N 1.31386 * 109.61749 * 0.02562 * 21 20 19 23 23 N 1.36545 * 119.87884 * 0.28140 * 19 18 17 24 24 H 1.08997 * 109.46994 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46878 * 300.00190 * 1 2 3 26 26 H 1.09005 * 109.47094 * 59.99411 * 1 2 3 27 27 H 0.97004 * 119.99613 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00295 * 94.99726 * 12 2 1 29 29 H 1.07998 * 120.02793 * 0.02562 * 16 15 13 30 30 H 1.07994 * 120.08953 * 180.28174 * 17 16 15 31 31 H 1.08002 * 120.14847 * 179.74657 * 18 17 16 32 32 H 1.08008 * 125.19690 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8278 -0.4191 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8582 1.1620 2.4117 15 6 2.6373 -0.7123 3.5592 16 6 2.7689 -0.0238 4.7450 17 6 3.2296 -0.6848 5.8883 18 6 3.5572 -2.0061 5.8215 19 6 3.4184 -2.6986 4.6037 20 7 3.6499 -3.9581 4.2516 21 6 3.3605 -4.1248 2.9707 22 7 2.9382 -2.9891 2.4626 23 7 2.9625 -2.0427 3.4963 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1618 -3.4844 28 1 2.2491 -1.6318 1.1526 29 1 2.5122 1.0241 4.7929 30 1 3.3294 -0.1486 6.8204 31 1 3.9174 -2.5207 6.7001 32 1 3.4574 -5.0524 2.4261 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359784056.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:45 Heat of formation + Delta-G solvation = 88.120565 kcal Electronic energy + Delta-G solvation = -18959.552834 eV Core-core repulsion = 15922.783103 eV Total energy + Delta-G solvation = -3036.769731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.74643 -39.27106 -37.49667 -34.92836 -33.83002 -32.28290 -31.01720 -30.05819 -28.89588 -25.30788 -24.83966 -23.52135 -22.84071 -20.97070 -19.82660 -18.07322 -17.68983 -16.83611 -16.31854 -16.11277 -15.52289 -15.28091 -14.45421 -14.26439 -14.15301 -13.34154 -13.05626 -12.76738 -12.44418 -12.22700 -11.83276 -11.59460 -11.29616 -11.13136 -10.96748 -10.81729 -10.43476 -10.24977 -10.16037 -9.68482 -9.47284 -9.09128 -8.58270 -8.41508 -7.99703 -6.13721 -4.22570 0.19878 0.83509 1.92183 2.46514 3.07634 3.26518 3.30883 3.32741 3.59610 3.64696 3.85581 4.14098 4.34789 4.64590 4.74371 4.87598 5.17073 5.18954 5.36559 5.62878 5.79735 6.02512 6.12191 6.32791 6.54211 6.76856 6.90723 7.07778 7.30105 7.49499 7.67113 7.83030 7.87237 8.09844 8.52296 8.70416 8.96065 9.43949 10.92515 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.005886 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.800236 B = 4755.534606 C = 5561.944607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.682 5.682 13 C 0.538 3.462 14 O -0.538 6.538 15 C 0.107 3.893 16 C -0.097 4.097 17 C -0.065 4.065 18 C -0.095 4.095 19 C 0.275 3.725 20 N -0.547 5.547 21 C 0.242 3.758 22 N -0.337 5.337 23 N -0.273 5.273 24 H 0.027 0.973 25 H 0.015 0.985 26 H 0.094 0.906 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.174 0.826 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -5.460 15.502 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.333 5.333 13 C 0.320 3.680 14 O -0.417 6.417 15 C -0.005 4.005 16 C -0.120 4.120 17 C -0.091 4.091 18 C -0.116 4.116 19 C 0.022 3.978 20 N -0.277 5.277 21 C -0.058 4.058 22 N -0.168 5.168 23 N -0.051 5.051 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.191 0.809 30 H 0.175 0.825 31 H 0.177 0.823 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.788 -4.853 14.650 15.891 hybrid contribution 0.413 -0.894 -0.800 1.269 sum 4.201 -5.747 13.850 15.572 Atomic orbital electron populations 1.22083 0.98018 0.99343 1.01090 1.18896 0.91338 0.94046 0.79742 0.93048 1.21154 1.32592 1.13318 0.90093 0.91983 1.24874 0.94754 0.94955 0.99021 1.69888 1.35836 1.22397 1.24061 0.86467 0.79193 0.79636 0.81586 1.20064 1.21063 1.20151 1.46972 1.61430 1.15318 1.09582 1.17592 0.80608 0.86886 0.82941 1.90812 1.52163 1.14351 1.84379 1.21193 1.01039 0.79894 0.98382 1.21488 0.99240 1.02062 0.89243 1.21256 0.95093 0.93617 0.99123 1.20440 1.02483 0.94091 0.94614 1.21857 0.96758 0.89162 0.90044 1.70818 1.29443 1.13562 1.13918 1.26197 0.92870 0.97219 0.89561 1.78246 1.31684 0.98677 1.08223 1.47947 1.39736 1.08116 1.09272 0.95333 0.96574 0.88777 0.92466 0.75311 0.80890 0.82514 0.82318 0.75527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.91 2.56 -69.09 -0.18 6.73 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.53 -14.68 8.73 -34.44 -0.30 -14.98 16 5 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.68 -15.75 5.06 -56.08 -0.28 -16.03 16 13 C 0.54 11.40 7.74 -12.62 -0.10 11.30 16 14 O -0.54 -12.53 15.95 5.25 0.08 -12.45 16 15 C 0.11 1.78 6.80 -82.05 -0.56 1.22 16 16 C -0.10 -1.17 9.58 -39.15 -0.38 -1.54 16 17 C -0.07 -0.55 10.04 -39.67 -0.40 -0.95 16 18 C -0.09 -0.93 10.09 -39.32 -0.40 -1.33 16 19 C 0.27 3.90 7.88 -156.38 -1.23 2.67 16 20 N -0.55 -7.98 11.24 -13.99 -0.16 -8.14 16 21 C 0.24 3.39 12.98 -92.01 -1.19 2.19 16 22 N -0.34 -5.77 9.99 29.25 0.29 -5.48 16 23 N -0.27 -4.51 3.93 -8.82 -0.03 -4.55 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.41 8.99 5.48 -40.82 -0.22 8.77 16 29 H 0.17 1.89 7.59 -52.49 -0.40 1.49 16 30 H 0.16 0.65 8.06 -52.49 -0.42 0.22 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.23 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -32.99 282.53 -7.70 -40.69 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.99 Total: 6.46 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -4.48 Total: 3.65 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.44 Total: -58.63 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.99 -7.70 -40.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359784056.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.811 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds