Wall clock time and date at job start Mon Mar 30 2020 04:46:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.46994 * 2 1
4 4 C 1.50694 * 109.46870 * 240.00253 * 2 1 3
5 5 H 1.08005 * 119.99859 * 240.00136 * 4 2 1
6 6 C 1.37879 * 120.00440 * 59.99833 * 4 2 1
7 7 N 1.31513 * 119.99685 * 0.02562 * 6 4 2
8 8 Si 1.86799 * 120.00191 * 179.97438 * 6 4 2
9 9 H 1.48497 * 109.47316 * 60.00083 * 8 6 4
10 10 H 1.48497 * 109.47060 * 180.02562 * 8 6 4
11 11 H 1.48507 * 109.47073 * 300.00076 * 8 6 4
12 12 N 1.46497 * 109.47296 * 120.00053 * 2 1 3
13 13 C 1.34774 * 119.99986 * 275.00169 * 12 2 1
14 14 O 1.21631 * 120.00289 * 359.97438 * 13 12 2
15 15 C 1.47207 * 120.00197 * 179.97438 * 13 12 2
16 16 C 1.37755 * 119.94379 * 179.97438 * 15 13 12
17 17 C 1.39861 * 119.93059 * 179.74466 * 16 15 13
18 18 C 1.36298 * 119.82001 * 0.54039 * 17 16 15
19 19 C 1.40777 * 119.70707 * 359.46294 * 18 17 16
20 20 N 1.32818 * 132.74044 * 180.27802 * 19 18 17
21 21 C 1.32367 * 109.74471 * 180.02562 * 20 19 18
22 22 N 1.31386 * 109.61749 * 0.02562 * 21 20 19
23 23 N 1.36545 * 119.87884 * 0.28140 * 19 18 17
24 24 H 1.08997 * 109.46994 * 180.02562 * 1 2 3
25 25 H 1.09007 * 109.46878 * 300.00190 * 1 2 3
26 26 H 1.09005 * 109.47094 * 59.99411 * 1 2 3
27 27 H 0.97004 * 119.99613 * 179.97438 * 7 6 4
28 28 H 0.97000 * 120.00295 * 94.99726 * 12 2 1
29 29 H 1.07998 * 120.02793 * 0.02562 * 16 15 13
30 30 H 1.07994 * 120.08953 * 180.28174 * 17 16 15
31 31 H 1.08002 * 120.14847 * 179.74657 * 18 17 16
32 32 H 1.08008 * 125.19690 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9435 0.8303 -2.6034
8 14 2.3224 -1.1195 -4.0080
9 1 1.8280 -2.5197 -4.0082
10 1 1.8278 -0.4191 -5.2204
11 1 3.8075 -1.1189 -4.0078
12 7 2.0184 -0.6906 1.1961
13 6 2.1471 -0.0183 2.3571
14 8 1.8582 1.1620 2.4117
15 6 2.6373 -0.7123 3.5592
16 6 2.7689 -0.0238 4.7450
17 6 3.2296 -0.6848 5.8883
18 6 3.5572 -2.0061 5.8215
19 6 3.4184 -2.6986 4.6037
20 7 3.6499 -3.9581 4.2516
21 6 3.3605 -4.1248 2.9707
22 7 2.9382 -2.9891 2.4626
23 7 2.9625 -2.0427 3.4963
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 0.7095 1.1618 -3.4844
28 1 2.2491 -1.6318 1.1526
29 1 2.5122 1.0241 4.7929
30 1 3.3294 -0.1486 6.8204
31 1 3.9174 -2.5207 6.7001
32 1 3.4574 -5.0524 2.4261
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000359784056.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:46:44
Heat of formation + Delta-G solvation = 66.148372 kcal
Electronic energy + Delta-G solvation = -18960.505620 eV
Core-core repulsion = 15922.783103 eV
Total energy + Delta-G solvation = -3037.722517 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 260.101 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-43.80201 -40.84328 -38.61992 -36.84650 -35.03911 -34.13300 -32.05279 -31.34679
-30.63017 -27.43157 -26.06786 -24.54263 -24.08376 -22.57446 -21.56048 -19.51202
-18.87314 -18.13594 -17.56057 -17.45505 -17.14067 -16.67020 -16.22419 -15.88615
-15.21310 -15.07825 -14.52763 -13.89539 -13.86755 -13.60868 -13.27216 -13.11607
-12.93280 -12.82191 -12.71952 -12.36889 -12.26895 -12.21207 -11.40449 -11.23304
-11.07217 -10.72651 -10.66373 -9.97240 -9.40036 -8.24007 -6.41884 -0.83383
-0.11605 0.87006 1.34255 1.40375 1.42997 1.51176 1.87834 2.12550
2.39138 2.40862 2.91933 3.05590 3.07679 3.64575 3.83263 3.93487
4.10536 4.40406 4.61759 4.80502 4.83093 4.95464 4.96823 5.09318
5.24188 5.26839 5.32464 5.46146 5.51507 5.59993 5.79301 5.99216
6.61994 6.68568 6.80858 7.16185 7.32457 8.82417
Molecular weight = 260.10amu
Principal moments of inertia in cm(-1)
A = 0.027026 B = 0.005886 C = 0.005033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1035.800236 B = 4755.534606 C = 5561.944607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.267 3.733
3 H 0.008 0.992
4 C -0.553 4.553
5 H 0.062 0.938
6 C 0.020 3.980
7 N -0.913 5.913
8 Si 0.974 3.026
9 H -0.266 1.266
10 H -0.278 1.278
11 H -0.272 1.272
12 N -0.693 5.693
13 C 0.536 3.464
14 O -0.572 6.572
15 C 0.052 3.948
16 C -0.060 4.060
17 C -0.046 4.046
18 C -0.075 4.075
19 C 0.258 3.742
20 N -0.559 5.559
21 C 0.243 3.757
22 N -0.388 5.388
23 N -0.284 5.284
24 H 0.033 0.967
25 H 0.017 0.983
26 H 0.075 0.925
27 H 0.269 0.731
28 H 0.411 0.589
29 H 0.185 0.815
30 H 0.217 0.783
31 H 0.201 0.799
32 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.296 -6.535 17.924 19.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.164 3.836
3 H 0.026 0.974
4 C -0.591 4.591
5 H 0.080 0.920
6 C -0.181 4.181
7 N -0.550 5.550
8 Si 0.798 3.202
9 H -0.190 1.190
10 H -0.203 1.203
11 H -0.197 1.197
12 N -0.345 5.345
13 C 0.321 3.679
14 O -0.454 6.454
15 C -0.059 4.059
16 C -0.084 4.084
17 C -0.071 4.071
18 C -0.096 4.096
19 C 0.005 3.995
20 N -0.289 5.289
21 C -0.057 4.057
22 N -0.220 5.220
23 N -0.061 5.061
24 H 0.052 0.948
25 H 0.036 0.964
26 H 0.094 0.906
27 H 0.078 0.922
28 H 0.252 0.748
29 H 0.202 0.798
30 H 0.234 0.766
31 H 0.218 0.782
32 H 0.277 0.723
Dipole moment (debyes) X Y Z Total
from point charges 4.910 -5.941 17.110 18.766
hybrid contribution 0.108 -0.520 -1.344 1.445
sum 5.018 -6.461 15.767 17.763
Atomic orbital electron populations
1.21891 0.97721 0.99271 1.00172 1.18515 0.91569 0.92115 0.81397
0.97396 1.21398 1.33143 1.13587 0.90997 0.92007 1.25769 0.94673
0.95572 1.02089 1.70016 1.36514 1.23553 1.24950 0.85373 0.78610
0.78727 0.77499 1.19032 1.20318 1.19723 1.46819 1.62588 1.15515
1.09573 1.18186 0.79279 0.86661 0.83729 1.90764 1.53534 1.15773
1.85290 1.20702 1.06650 0.80717 0.97797 1.21988 0.95331 1.02383
0.88656 1.21844 0.92644 0.93033 0.99550 1.21154 0.99985 0.94481
0.93944 1.22705 0.96669 0.89244 0.90848 1.70837 1.30069 1.13943
1.14076 1.26865 0.91576 0.97541 0.89705 1.78107 1.33871 0.99899
1.10161 1.47849 1.40545 1.07899 1.09834 0.94787 0.96370 0.90640
0.92198 0.74762 0.79769 0.76581 0.78188 0.72301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16
2 C 0.27 14.91 2.56 44.24 0.11 15.02 16
3 H 0.01 0.52 7.58 -2.39 -0.02 0.50 16
4 C -0.55 -31.54 8.73 25.60 0.22 -31.32 16
5 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16
6 C 0.02 1.09 5.30 84.66 0.45 1.54 16
7 N -0.91 -53.18 11.32 21.45 0.24 -52.94 16
8 Si 0.97 43.56 29.54 68.60 2.03 45.59 16
9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16
10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16
11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
12 N -0.69 -33.69 5.06 -449.60 -2.28 -35.97 16
13 C 0.54 23.70 7.74 86.60 0.67 24.37 16
14 O -0.57 -27.88 15.95 -4.13 -0.07 -27.94 16
15 C 0.05 1.72 6.80 40.56 0.28 2.00 16
16 C -0.06 -1.29 9.58 22.55 0.22 -1.08 16
17 C -0.05 -0.52 10.04 22.21 0.22 -0.30 16
18 C -0.07 -1.11 10.09 22.44 0.23 -0.88 16
19 C 0.26 6.75 7.88 134.16 1.06 7.81 16
20 N -0.56 -15.40 11.24 -198.18 -2.23 -17.63 16
21 C 0.24 6.69 12.98 180.83 2.35 9.04 16
22 N -0.39 -13.53 9.99 -61.38 -0.61 -14.15 16
23 N -0.28 -9.30 3.93 -181.80 -0.71 -10.01 16
24 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16
25 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16
26 H 0.07 4.30 6.07 -2.38 -0.01 4.29 16
27 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16
28 H 0.41 19.12 5.48 -92.71 -0.51 18.61 16
29 H 0.19 3.53 7.59 -2.91 -0.02 3.50 16
30 H 0.22 0.02 8.06 -2.91 -0.02 0.00 16
31 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16
32 H 0.26 4.67 8.06 -2.91 -0.02 4.65 16
Total: -1.00 -77.17 282.53 3.50 -73.67
By element:
Atomic # 1 Polarization: 18.90 SS G_CDS: 0.66 Total: 19.56 kcal
Atomic # 6 Polarization: 13.35 SS G_CDS: 6.47 Total: 19.82 kcal
Atomic # 7 Polarization: -125.11 SS G_CDS: -5.59 Total: -130.69 kcal
Atomic # 8 Polarization: -27.88 SS G_CDS: -0.07 Total: -27.94 kcal
Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal
Total: -77.17 3.50 -73.67 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359784056.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.819 kcal
(2) G-P(sol) polarization free energy of solvation -77.169 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds