Wall clock time and date at job start Mon Mar 30 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46524 * 2 1 4 4 C 1.50700 * 109.47068 * 119.99652 * 2 1 3 5 5 H 1.08002 * 119.99574 * 120.00338 * 4 2 1 6 6 C 1.37875 * 120.00097 * 299.99989 * 4 2 1 7 7 N 1.31509 * 120.00237 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99585 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47590 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46881 * 120.00358 * 8 6 4 11 11 H 1.48501 * 109.47043 * 239.99995 * 8 6 4 12 12 N 1.46496 * 109.47306 * 240.00057 * 2 1 3 13 13 C 1.34775 * 119.99984 * 84.99239 * 12 2 1 14 14 O 1.21631 * 120.00308 * 0.02562 * 13 12 2 15 15 C 1.47206 * 120.00199 * 180.02562 * 13 12 2 16 16 C 1.37755 * 119.94424 * 180.02562 * 15 13 12 17 17 C 1.39859 * 119.93149 * 179.77442 * 16 15 13 18 18 C 1.36298 * 119.81988 * 0.45512 * 17 16 15 19 19 C 1.40772 * 119.71056 * 359.51960 * 18 17 16 20 20 N 1.32818 * 132.74393 * 180.27804 * 19 18 17 21 21 C 1.32375 * 109.74239 * 179.97438 * 20 19 18 22 22 N 1.31386 * 109.61989 * 0.02562 * 21 20 19 23 23 N 1.36555 * 119.87562 * 0.25716 * 19 18 17 24 24 H 1.08995 * 109.47486 * 60.00135 * 1 2 3 25 25 H 1.09000 * 109.46768 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47405 * 299.99889 * 1 2 3 27 27 H 0.96995 * 119.99914 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00277 * 265.00356 * 12 2 1 29 29 H 1.08006 * 120.03032 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.08717 * 180.25317 * 17 16 15 31 31 H 1.08002 * 120.14847 * 179.80323 * 18 17 16 32 32 H 1.07998 * 125.18909 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.1484 -2.2854 3.6038 10 1 3.1473 -0.1855 4.8160 11 1 1.1679 -1.5865 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8580 1.1620 -2.4117 15 6 2.6372 -0.7123 -3.5592 16 6 2.7686 -0.0238 -4.7451 17 6 3.2389 -0.6823 -5.8859 18 6 3.5566 -2.0061 -5.8217 19 6 3.4185 -2.6986 -4.6038 20 7 3.6509 -3.9579 -4.2515 21 6 3.3616 -4.1244 -2.9705 22 7 2.9376 -2.9892 -2.4628 23 7 2.9626 -2.0426 -3.4963 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7082 1.1609 3.4844 28 1 2.2491 -1.6317 -1.1526 29 1 2.5119 1.0242 -4.7930 30 1 3.3468 -0.1439 -6.8159 31 1 3.9172 -2.5206 -6.7002 32 1 3.4593 -5.0519 -2.4259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359784059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:47 Heat of formation + Delta-G solvation = 88.022421 kcal Electronic energy + Delta-G solvation = -18959.974225 eV Core-core repulsion = 15923.200238 eV Total energy + Delta-G solvation = -3036.773987 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.74498 -39.27125 -37.49642 -34.92985 -33.83017 -32.28513 -31.01666 -30.05812 -28.89725 -25.31205 -24.84039 -23.52090 -22.84087 -20.97187 -19.82742 -18.07310 -17.69007 -16.83691 -16.31779 -16.11520 -15.52773 -15.28329 -14.44954 -14.26289 -14.15472 -13.33720 -13.05636 -12.76675 -12.45258 -12.22777 -11.83942 -11.59688 -11.29709 -11.12453 -10.97933 -10.82591 -10.40598 -10.25983 -10.15621 -9.68439 -9.47521 -9.07586 -8.59129 -8.41559 -7.99756 -6.14252 -4.22892 0.19880 0.83529 1.92202 2.46520 3.07636 3.23806 3.31277 3.35111 3.59676 3.64664 3.85618 4.14120 4.34598 4.64620 4.74408 4.87595 5.17034 5.18706 5.36533 5.62871 5.79746 6.02521 6.12216 6.32811 6.54224 6.76757 6.90568 7.07736 7.30007 7.49448 7.67205 7.82985 7.87231 8.09612 8.52144 8.70644 8.96117 9.43798 10.92103 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.005886 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.920245 B = 4755.544309 C = 5561.668680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.682 5.682 13 C 0.538 3.462 14 O -0.538 6.538 15 C 0.107 3.893 16 C -0.097 4.097 17 C -0.065 4.065 18 C -0.095 4.095 19 C 0.275 3.725 20 N -0.547 5.547 21 C 0.242 3.758 22 N -0.337 5.337 23 N -0.274 5.274 24 H 0.015 0.985 25 H 0.028 0.972 26 H 0.094 0.906 27 H 0.264 0.736 28 H 0.407 0.593 29 H 0.174 0.826 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.211 -5.472 -15.522 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.070 0.930 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.333 5.333 13 C 0.320 3.680 14 O -0.417 6.417 15 C -0.005 4.005 16 C -0.120 4.120 17 C -0.091 4.091 18 C -0.116 4.116 19 C 0.022 3.978 20 N -0.277 5.277 21 C -0.058 4.058 22 N -0.168 5.168 23 N -0.051 5.051 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.247 0.753 29 H 0.191 0.809 30 H 0.175 0.825 31 H 0.177 0.823 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.823 -4.873 -14.675 15.928 hybrid contribution 0.398 -0.873 0.810 1.256 sum 4.221 -5.746 -13.864 15.590 Atomic orbital electron populations 1.22080 0.98010 0.99352 1.01098 1.18909 0.91350 0.94061 0.79776 0.93042 1.21231 1.32431 1.13271 0.90063 0.91871 1.24878 0.94771 0.94958 0.99051 1.69903 1.35925 1.22506 1.23850 0.86359 0.78646 0.79571 0.82364 1.19660 1.20826 1.20786 1.46972 1.61430 1.15320 1.09580 1.17592 0.80604 0.86886 0.82943 1.90812 1.52156 1.14355 1.84383 1.21192 1.01046 0.79909 0.98359 1.21489 0.99203 1.02080 0.89267 1.21257 0.95101 0.93598 0.99132 1.20439 1.02535 0.94038 0.94619 1.21857 0.96767 0.89164 0.90030 1.70822 1.29454 1.13567 1.13897 1.26197 0.92854 0.97225 0.89569 1.78246 1.31645 0.98679 1.08247 1.47950 1.39739 1.08107 1.09281 0.96562 0.95329 0.88779 0.92578 0.75306 0.80890 0.82513 0.82320 0.75530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.53 -14.63 8.73 -34.44 -0.30 -14.93 16 5 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.68 -15.74 5.06 -56.08 -0.28 -16.02 16 13 C 0.54 11.39 7.74 -12.62 -0.10 11.29 16 14 O -0.54 -12.53 15.95 5.25 0.08 -12.45 16 15 C 0.11 1.78 6.80 -82.05 -0.56 1.22 16 16 C -0.10 -1.17 9.58 -39.15 -0.38 -1.54 16 17 C -0.07 -0.55 10.04 -39.67 -0.40 -0.95 16 18 C -0.09 -0.93 10.09 -39.32 -0.40 -1.33 16 19 C 0.27 3.90 7.88 -156.37 -1.23 2.67 16 20 N -0.55 -7.98 11.24 -13.99 -0.16 -8.14 16 21 C 0.24 3.39 12.98 -92.00 -1.19 2.20 16 22 N -0.34 -5.77 9.99 29.25 0.29 -5.48 16 23 N -0.27 -4.52 3.93 -8.81 -0.03 -4.55 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.41 9.00 5.48 -40.82 -0.22 8.77 16 29 H 0.17 1.88 7.59 -52.48 -0.40 1.49 16 30 H 0.16 0.65 8.06 -52.48 -0.42 0.22 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.23 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -33.03 282.53 -7.70 -40.73 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -2.99 Total: 6.42 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -4.48 Total: 3.66 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.44 Total: -58.63 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.03 -7.70 -40.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359784059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.754 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds