Wall clock time and date at job start Mon Mar 30 2020 04:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46524 * 2 1 4 4 C 1.50700 * 109.47068 * 119.99652 * 2 1 3 5 5 H 1.08002 * 119.99574 * 120.00338 * 4 2 1 6 6 C 1.37875 * 120.00097 * 299.99989 * 4 2 1 7 7 N 1.31509 * 120.00237 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99585 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47590 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46881 * 120.00358 * 8 6 4 11 11 H 1.48501 * 109.47043 * 239.99995 * 8 6 4 12 12 N 1.46496 * 109.47306 * 240.00057 * 2 1 3 13 13 C 1.34775 * 119.99984 * 84.99239 * 12 2 1 14 14 O 1.21631 * 120.00308 * 0.02562 * 13 12 2 15 15 C 1.47206 * 120.00199 * 180.02562 * 13 12 2 16 16 C 1.37755 * 119.94424 * 180.02562 * 15 13 12 17 17 C 1.39859 * 119.93149 * 179.77442 * 16 15 13 18 18 C 1.36298 * 119.81988 * 0.45512 * 17 16 15 19 19 C 1.40772 * 119.71056 * 359.51960 * 18 17 16 20 20 N 1.32818 * 132.74393 * 180.27804 * 19 18 17 21 21 C 1.32375 * 109.74239 * 179.97438 * 20 19 18 22 22 N 1.31386 * 109.61989 * 0.02562 * 21 20 19 23 23 N 1.36555 * 119.87562 * 0.25716 * 19 18 17 24 24 H 1.08995 * 109.47486 * 60.00135 * 1 2 3 25 25 H 1.09000 * 109.46768 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47405 * 299.99889 * 1 2 3 27 27 H 0.96995 * 119.99914 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00277 * 265.00356 * 12 2 1 29 29 H 1.08006 * 120.03032 * 359.97438 * 16 15 13 30 30 H 1.08003 * 120.08717 * 180.25317 * 17 16 15 31 31 H 1.08002 * 120.14847 * 179.80323 * 18 17 16 32 32 H 1.07998 * 125.18909 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1194 4.0079 9 1 3.1484 -2.2854 3.6038 10 1 3.1473 -0.1855 4.8160 11 1 1.1679 -1.5865 4.8165 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8580 1.1620 -2.4117 15 6 2.6372 -0.7123 -3.5592 16 6 2.7686 -0.0238 -4.7451 17 6 3.2389 -0.6823 -5.8859 18 6 3.5566 -2.0061 -5.8217 19 6 3.4185 -2.6986 -4.6038 20 7 3.6509 -3.9579 -4.2515 21 6 3.3616 -4.1244 -2.9705 22 7 2.9376 -2.9892 -2.4628 23 7 2.9626 -2.0426 -3.4963 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7082 1.1609 3.4844 28 1 2.2491 -1.6317 -1.1526 29 1 2.5119 1.0242 -4.7930 30 1 3.3468 -0.1439 -6.8159 31 1 3.9172 -2.5206 -6.7002 32 1 3.4593 -5.0519 -2.4259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359784059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:47 Heat of formation + Delta-G solvation = 66.013671 kcal Electronic energy + Delta-G solvation = -18960.928596 eV Core-core repulsion = 15923.200238 eV Total energy + Delta-G solvation = -3037.728358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.80095 -40.84326 -38.61967 -36.84786 -35.03981 -34.13471 -32.05255 -31.34729 -30.63082 -27.43669 -26.06823 -24.54253 -24.08435 -22.57572 -21.56039 -19.51292 -18.87424 -18.13880 -17.56643 -17.45469 -17.14195 -16.67101 -16.21811 -15.88617 -15.21374 -15.07636 -14.53419 -13.89532 -13.87767 -13.60934 -13.27376 -13.11217 -12.93355 -12.83387 -12.71838 -12.37363 -12.26983 -12.20021 -11.40476 -11.21630 -11.07003 -10.72656 -10.67592 -9.97227 -9.40031 -8.24536 -6.42183 -0.83373 -0.11603 0.87004 1.34213 1.40126 1.40425 1.53598 1.87798 2.12612 2.39062 2.40665 2.91903 3.05246 3.07641 3.64573 3.83274 3.93510 4.10537 4.40395 4.61725 4.80474 4.83055 4.95474 4.96823 5.09312 5.24184 5.26783 5.32428 5.46269 5.51664 5.59948 5.79168 5.99143 6.62294 6.68481 6.80815 7.16159 7.32317 8.82353 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.005886 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.920245 B = 4755.544309 C = 5561.668680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.266 3.734 3 H 0.008 0.992 4 C -0.551 4.551 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.974 3.026 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.273 1.273 12 N -0.693 5.693 13 C 0.536 3.464 14 O -0.572 6.572 15 C 0.052 3.948 16 C -0.060 4.060 17 C -0.046 4.046 18 C -0.075 4.075 19 C 0.258 3.742 20 N -0.559 5.559 21 C 0.243 3.757 22 N -0.388 5.388 23 N -0.284 5.284 24 H 0.017 0.983 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.269 0.731 28 H 0.411 0.589 29 H 0.185 0.815 30 H 0.217 0.783 31 H 0.201 0.799 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -6.521 -17.940 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.163 3.837 3 H 0.026 0.974 4 C -0.589 4.589 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.798 3.202 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.198 1.198 12 N -0.345 5.345 13 C 0.322 3.678 14 O -0.454 6.454 15 C -0.059 4.059 16 C -0.084 4.084 17 C -0.071 4.071 18 C -0.096 4.096 19 C 0.005 3.995 20 N -0.289 5.289 21 C -0.057 4.057 22 N -0.220 5.220 23 N -0.061 5.061 24 H 0.036 0.964 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.252 0.748 29 H 0.202 0.798 30 H 0.234 0.766 31 H 0.218 0.782 32 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 4.947 -5.933 -17.131 18.792 hybrid contribution 0.090 -0.507 1.355 1.449 sum 5.037 -6.439 -15.776 17.769 Atomic orbital electron populations 1.21888 0.97713 0.99289 1.00174 1.18528 0.91579 0.92131 0.81419 0.97377 1.21453 1.32974 1.13494 0.90974 0.92020 1.25769 0.94697 0.95575 1.02109 1.70024 1.36585 1.23650 1.24831 0.85265 0.78283 0.78446 0.78170 1.19025 1.20326 1.19838 1.46819 1.62588 1.15514 1.09574 1.18185 0.79273 0.86661 0.83729 1.90764 1.53526 1.15775 1.85292 1.20703 1.06650 0.80731 0.97781 1.21989 0.95322 1.02388 0.88660 1.21846 0.92646 0.93027 0.99548 1.21153 1.00024 0.94442 0.93953 1.22705 0.96675 0.89241 0.90836 1.70841 1.30083 1.13952 1.14051 1.26863 0.91566 0.97546 0.89715 1.78108 1.33835 0.99902 1.10189 1.47852 1.40547 1.07890 1.09841 0.96356 0.94770 0.90652 0.92210 0.74764 0.79763 0.76576 0.78190 0.72315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 2 C 0.27 14.87 2.56 44.25 0.11 14.98 16 3 H 0.01 0.53 7.58 -2.39 -0.02 0.51 16 4 C -0.55 -31.40 8.73 25.60 0.22 -31.18 16 5 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -53.19 11.32 21.45 0.24 -52.94 16 8 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 12 N -0.69 -33.69 5.06 -449.58 -2.28 -35.96 16 13 C 0.54 23.69 7.74 86.60 0.67 24.36 16 14 O -0.57 -27.86 15.95 -4.13 -0.07 -27.93 16 15 C 0.05 1.72 6.80 40.56 0.28 2.00 16 16 C -0.06 -1.29 9.58 22.55 0.22 -1.08 16 17 C -0.05 -0.52 10.04 22.21 0.22 -0.30 16 18 C -0.07 -1.11 10.09 22.44 0.23 -0.88 16 19 C 0.26 6.76 7.88 134.16 1.06 7.81 16 20 N -0.56 -15.42 11.24 -198.17 -2.23 -17.64 16 21 C 0.24 6.70 12.98 180.83 2.35 9.05 16 22 N -0.39 -13.55 9.99 -61.38 -0.61 -14.16 16 23 N -0.28 -9.30 3.93 -181.80 -0.71 -10.01 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 4.29 6.07 -2.38 -0.01 4.28 16 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.41 19.13 5.48 -92.71 -0.51 18.62 16 29 H 0.19 3.52 7.59 -2.91 -0.02 3.50 16 30 H 0.22 0.02 8.06 -2.91 -0.02 0.00 16 31 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.26 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -77.24 282.53 3.50 -73.74 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.66 Total: 19.40 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.47 Total: 19.89 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -5.59 Total: -130.72 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.07 Total: -27.93 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -77.24 3.50 -73.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359784059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.752 kcal (2) G-P(sol) polarization free energy of solvation -77.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds