Wall clock time and date at job start Mon Mar 30 2020 04:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00509 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00068 * 3 2 1 7 7 C 1.38805 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99580 * 359.71792 * 7 2 1 10 10 C 1.81002 * 99.99786 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47461 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47509 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47292 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99934 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.46732 * 180.02562 * 14 13 12 16 16 H 1.08995 * 110.50701 * 295.70288 * 15 14 13 17 17 C 1.54097 * 110.56213 * 172.95847 * 15 14 13 18 18 O 1.46037 * 103.84284 * 241.46712 * 17 15 14 19 19 C 1.33769 * 109.51317 * 359.87934 * 18 17 15 20 20 O 1.21513 * 123.07544 * 180.10095 * 19 18 17 21 21 N 1.34004 * 113.85689 * 0.08198 * 19 18 17 22 22 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47407 * 300.00715 * 10 9 7 24 24 H 1.09004 * 109.47205 * 60.00275 * 10 9 7 25 25 H 1.08996 * 109.47097 * 300.00443 * 11 10 9 26 26 H 1.09004 * 109.46652 * 59.99979 * 11 10 9 27 27 H 1.08995 * 109.46823 * 300.00485 * 12 11 10 28 28 H 1.09002 * 109.46667 * 60.00153 * 12 11 10 29 29 H 1.00905 * 110.99471 * 56.04857 * 13 12 11 30 30 H 1.09000 * 109.46830 * 299.99729 * 14 13 12 31 31 H 1.08992 * 109.47103 * 60.00056 * 14 13 12 32 32 H 1.09003 * 110.51637 * 0.05946 * 17 15 14 33 33 H 1.08994 * 110.51757 * 122.79157 * 17 15 14 34 34 H 0.97005 * 125.56212 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 0.0063 10 6 2.5158 -3.8915 0.0035 11 6 1.9793 -5.3243 0.0095 12 6 3.1513 -6.3078 0.0065 13 7 2.6362 -7.6835 0.0115 14 6 3.7359 -8.6574 0.0095 15 6 3.1612 -10.0754 0.0142 16 1 2.6108 -10.2613 0.9364 17 6 4.2844 -11.1152 -0.1647 18 8 3.9362 -11.7949 -1.4095 19 6 2.8077 -11.2731 -1.9030 20 8 2.2942 -11.6592 -2.9344 21 7 2.2950 -10.2859 -1.1558 22 1 -0.4850 0.8401 0.0004 23 1 3.1211 -3.7334 -0.8891 24 1 3.1278 -3.7295 0.8908 25 1 1.3744 -5.4821 0.9023 26 1 1.3670 -5.4866 -0.8776 27 1 3.7558 -6.1499 -0.8866 28 1 3.7639 -6.1456 0.8933 29 1 2.0133 -7.8392 -0.7669 30 1 4.3451 -8.5157 -0.8832 31 1 4.3520 -8.5117 0.8967 32 1 5.2516 -10.6209 -0.2559 33 1 4.2904 -11.8182 0.6682 34 1 1.4846 -9.7910 -1.3540 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380335148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:52 Heat of formation + Delta-G solvation = -86.367780 kcal Electronic energy + Delta-G solvation = -16478.732088 eV Core-core repulsion = 13537.547175 eV Total energy + Delta-G solvation = -2941.184913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.94006 -37.76449 -37.08291 -35.09015 -32.60171 -32.42237 -30.32571 -26.70567 -25.59021 -24.02628 -22.66518 -22.25150 -21.13655 -18.53050 -17.75244 -17.48263 -16.82470 -16.19862 -15.38218 -15.06664 -14.84714 -14.83127 -14.58133 -14.06139 -13.95074 -13.48086 -13.18378 -12.76390 -12.37597 -12.12275 -11.68266 -11.42320 -11.11657 -11.11122 -10.99026 -10.84694 -10.65543 -10.52379 -9.82839 -9.55958 -9.09727 -8.76417 -8.34258 -6.56657 -6.26072 -3.96628 2.31506 2.40730 3.12103 3.18581 3.18722 3.27436 3.37259 3.58454 4.01478 4.19101 4.25630 4.34664 4.66209 4.80116 4.94834 5.09754 5.10496 5.18762 5.27868 5.33753 5.43133 5.61037 5.80682 5.96944 6.23684 6.40294 6.49762 6.58355 6.76026 6.87701 7.02252 7.57687 7.74535 8.33602 9.20416 10.82171 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.055287 B = 0.002741 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.324177 B =10212.877745 C =10413.647999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.516 4.516 8 H 0.073 0.927 9 S -0.132 6.132 10 C -0.113 4.113 11 C -0.096 4.096 12 C 0.063 3.937 13 N -0.687 5.687 14 C 0.048 3.952 15 C 0.096 3.904 16 H 0.113 0.887 17 C 0.045 3.955 18 O -0.330 6.330 19 C 0.645 3.355 20 O -0.525 6.525 21 N -0.730 5.730 22 H 0.267 0.733 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.339 0.661 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -19.428 2.812 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.665 4.665 8 H 0.091 0.909 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.135 4.135 12 C -0.067 4.067 13 N -0.318 5.318 14 C -0.083 4.083 15 C -0.010 4.010 16 H 0.131 0.869 17 C -0.030 4.030 18 O -0.240 6.240 19 C 0.397 3.603 20 O -0.409 6.409 21 N -0.403 5.403 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 7.358 -20.007 2.902 21.514 hybrid contribution 1.830 1.808 -0.811 2.698 sum 9.188 -18.199 2.091 20.494 Atomic orbital electron populations 1.70033 1.05925 1.27259 1.47267 1.25028 0.95095 0.99136 0.94592 0.86104 0.79621 0.81829 0.77912 1.19619 1.20563 1.20539 1.22727 0.94528 0.90759 1.58456 0.90921 1.84650 1.09430 0.99467 1.96848 1.23219 1.02961 0.97281 1.02780 1.21251 0.96838 0.92208 1.03200 1.22061 0.97502 0.86461 1.00679 1.60484 1.17983 1.03211 1.50165 1.22384 0.93841 0.89942 1.02132 1.22505 0.91635 0.95654 0.91210 0.86884 1.24453 0.99113 0.94260 0.85203 1.87332 1.40010 1.57641 1.39021 1.18542 0.79424 0.79055 0.83261 1.91098 1.61731 1.65357 1.22742 1.46097 1.29733 1.39003 1.25516 0.92326 0.92319 0.92066 0.90593 0.91785 0.95092 0.90706 0.84293 0.94259 0.88867 0.87346 0.87081 0.71897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.65 9.50 30.94 0.29 -14.36 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.40 21.44 -107.50 -2.30 -5.70 16 10 C -0.11 -2.18 5.67 37.16 0.21 -1.97 16 11 C -0.10 -1.43 5.48 -26.73 -0.15 -1.58 16 12 C 0.06 0.71 5.69 -3.83 -0.02 0.69 16 13 N -0.69 -6.07 6.50 -113.78 -0.74 -6.81 16 14 C 0.05 0.30 5.27 -3.82 -0.02 0.28 16 15 C 0.10 0.49 4.04 -67.03 -0.27 0.22 16 16 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 17 C 0.05 0.20 7.90 37.73 0.30 0.50 16 18 O -0.33 -3.15 11.10 -37.83 -0.42 -3.57 16 19 C 0.64 7.23 9.16 53.71 0.49 7.72 16 20 O -0.52 -8.21 18.04 -19.12 -0.34 -8.55 16 21 N -0.73 -5.54 5.67 -58.23 -0.33 -5.87 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 24 H 0.06 1.17 8.14 -51.91 -0.42 0.74 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.34 2.89 7.52 -39.29 -0.30 2.59 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.29 7.73 -51.93 -0.40 -0.11 16 33 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.44 2.96 8.14 -40.82 -0.33 2.63 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -34.58 305.96 -7.88 -42.46 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.80 Total: -1.20 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: 0.74 Total: -6.62 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.34 Total: -37.74 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.76 Total: -12.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.30 Total: -5.70 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.58 -7.88 -42.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380335148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.904 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds