Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86804 * 119.99813 * 2 1 4 4 H 1.48497 * 109.47007 * 270.00222 * 3 2 1 5 5 H 1.48497 * 109.46799 * 30.00572 * 3 2 1 6 6 H 1.48502 * 109.46681 * 150.00434 * 3 2 1 7 7 C 1.38800 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99902 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00082 * 179.97438 * 7 2 1 10 10 C 1.80994 * 99.99877 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47261 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47360 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47039 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 H 1.09002 * 110.50427 * 62.25957 * 15 14 13 17 17 C 1.54092 * 110.56182 * 184.99969 * 15 14 13 18 18 O 1.45699 * 104.00626 * 118.57251 * 17 15 14 19 19 C 1.33768 * 109.47798 * 359.97438 * 18 17 15 20 20 O 1.21512 * 123.06847 * 179.97438 * 19 18 17 21 21 N 1.34000 * 113.85556 * 359.97438 * 19 18 17 22 22 H 0.96995 * 120.00097 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47518 * 60.00554 * 10 9 7 24 24 H 1.08998 * 109.47383 * 300.00138 * 10 9 7 25 25 H 1.09001 * 109.46514 * 59.99802 * 11 10 9 26 26 H 1.08998 * 109.46924 * 300.00283 * 11 10 9 27 27 H 1.09001 * 109.47393 * 60.00433 * 12 11 10 28 28 H 1.08998 * 109.47408 * 300.00078 * 12 11 10 29 29 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 30 30 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 31 31 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 32 32 H 1.09000 * 110.51574 * 237.20075 * 17 15 14 33 33 H 1.09005 * 110.52223 * 359.79769 * 17 15 14 34 34 H 0.97004 * 125.55417 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7724 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0025 11 6 5.5959 -3.2362 -0.0026 12 6 5.8616 -4.7429 -0.0031 13 7 7.3106 -4.9846 -0.0026 14 6 7.6042 -6.4240 -0.0036 15 6 9.1196 -6.6354 -0.0024 16 1 9.5625 -6.2183 0.9020 17 6 9.4572 -8.1335 -0.1292 18 8 10.2102 -8.2212 -1.3735 19 6 10.3180 -7.0034 -1.9163 20 8 10.9010 -6.7927 -2.9614 21 7 9.7244 -6.0373 -1.2024 22 1 -0.4850 0.8400 0.0004 23 1 3.6435 -3.4309 -0.8927 24 1 3.6441 -3.4321 0.8873 25 1 6.0387 -2.7898 0.8877 26 1 6.0388 -2.7885 -0.8922 27 1 5.4187 -5.1897 -0.8933 28 1 5.4187 -5.1903 0.8867 29 1 7.7535 -4.5255 0.7792 30 1 7.1730 -6.8834 0.8858 31 1 7.1738 -6.8819 -0.8942 32 1 10.0692 -8.4596 0.7117 33 1 8.5449 -8.7270 -0.1895 34 1 9.6990 -5.0966 -1.4378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380335149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -86.902656 kcal Electronic energy + Delta-G solvation = -16496.379517 eV Core-core repulsion = 13555.171409 eV Total energy + Delta-G solvation = -2941.208107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.89898 -37.74265 -37.06816 -35.11771 -32.68313 -32.47043 -30.27892 -26.75386 -25.70242 -24.05979 -22.56374 -22.40433 -21.23461 -18.47480 -17.57814 -17.46123 -17.03377 -16.13061 -15.30091 -15.07438 -14.97004 -14.94314 -14.54094 -14.05244 -13.92592 -13.84223 -12.90281 -12.88151 -12.48642 -12.22054 -11.94887 -11.60138 -11.13315 -11.08953 -11.08385 -10.92773 -10.62532 -10.22550 -9.84001 -9.67924 -9.04239 -8.80436 -8.61559 -6.99061 -6.32046 -4.04917 2.39174 2.48008 2.94716 3.17238 3.27652 3.37641 3.42205 3.57379 3.99513 4.18076 4.28202 4.34761 4.66718 4.69788 4.77005 4.92156 5.06303 5.08765 5.10236 5.24210 5.34468 5.49058 5.68564 5.84862 6.10770 6.37852 6.48937 6.55461 6.67244 6.94398 7.01552 7.84252 7.91672 8.40239 9.13744 10.77452 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.051118 B = 0.002874 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.619181 B = 9741.552035 C =10007.847066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.503 4.503 8 H 0.088 0.912 9 S -0.214 6.214 10 C -0.083 4.083 11 C -0.099 4.099 12 C 0.064 3.936 13 N -0.689 5.689 14 C 0.047 3.953 15 C 0.096 3.904 16 H 0.103 0.897 17 C 0.045 3.955 18 O -0.330 6.330 19 C 0.643 3.357 20 O -0.527 6.527 21 N -0.715 5.715 22 H 0.271 0.729 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.342 0.658 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.565 -14.631 4.480 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.651 4.651 8 H 0.106 0.894 9 S 0.013 5.987 10 C -0.232 4.232 11 C -0.138 4.138 12 C -0.066 4.066 13 N -0.320 5.320 14 C -0.084 4.084 15 C -0.010 4.010 16 H 0.121 0.879 17 C -0.031 4.031 18 O -0.241 6.241 19 C 0.395 3.605 20 O -0.411 6.411 21 N -0.388 5.388 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.051 0.949 29 H 0.160 0.840 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 18.559 -13.878 3.206 23.395 hybrid contribution -1.274 0.033 1.009 1.625 sum 17.286 -13.845 4.215 22.544 Atomic orbital electron populations 1.69936 1.05940 1.27763 1.48209 1.24807 0.94520 0.99052 0.93310 0.86661 0.81687 0.83169 0.79761 1.19320 1.20094 1.16196 1.22119 0.87064 0.97407 1.58497 0.89436 1.84169 1.11726 1.05229 1.97532 1.23001 0.97171 0.99367 1.03654 1.21299 0.95181 0.94024 1.03266 1.22020 0.86360 0.97342 1.00861 1.60397 1.12096 1.09380 1.50144 1.22400 0.93080 0.90684 1.02201 1.22405 0.95077 0.93029 0.90517 0.87942 1.24340 0.97639 0.95638 0.85453 1.87277 1.70360 1.28849 1.37575 1.18563 0.78812 0.79668 0.83470 1.91091 1.46920 1.81652 1.21485 1.45946 1.57204 1.11530 1.24137 0.91934 0.91371 0.91563 0.91650 0.90567 0.90755 0.94868 0.83990 0.93161 0.89905 0.87340 0.87399 0.71387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 2 C 0.09 2.65 5.50 -17.43 -0.10 2.55 16 3 Si 0.86 21.31 27.74 -169.99 -4.72 16.60 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.50 -14.41 10.04 30.94 0.31 -14.10 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.24 16 9 S -0.21 -5.09 19.41 -107.50 -2.09 -7.18 16 10 C -0.08 -1.51 5.67 37.16 0.21 -1.30 16 11 C -0.10 -1.35 5.48 -26.73 -0.15 -1.49 16 12 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 13 N -0.69 -5.36 6.38 -113.78 -0.73 -6.08 16 14 C 0.05 0.26 5.21 -3.82 -0.02 0.24 16 15 C 0.10 0.45 3.97 -67.04 -0.27 0.18 16 16 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 17 C 0.05 0.19 7.88 37.73 0.30 0.49 16 18 O -0.33 -3.17 11.09 -37.82 -0.42 -3.59 16 19 C 0.64 7.37 9.16 53.71 0.49 7.86 16 20 O -0.53 -8.44 18.04 -19.12 -0.34 -8.78 16 21 N -0.72 -5.65 5.93 -58.23 -0.35 -6.00 16 22 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 23 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 24 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.34 2.25 8.73 -39.29 -0.34 1.91 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 0.27 7.73 -51.93 -0.40 -0.13 16 34 H 0.44 3.41 8.96 -40.82 -0.37 3.05 16 LS Contribution 305.29 15.07 4.60 4.60 Total: -1.00 -34.56 305.29 -7.42 -41.98 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.91 Total: -0.83 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 0.76 Total: -4.93 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.30 Total: -37.86 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.76 Total: -12.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.72 Total: 16.60 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -2.09 Total: -7.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.56 -7.42 -41.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380335149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.926 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds